Wall clock time and date at job start Tue Mar 31 2020 15:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34725 * 116.99964 * 270.00078 * 4 2 1 6 6 O 1.21487 * 120.00363 * 0.02562 * 5 4 2 7 7 C 1.47578 * 120.00139 * 180.02562 * 5 4 2 8 8 C 1.39739 * 120.15713 * 359.97438 * 7 5 4 9 9 C 1.37817 * 119.91949 * 180.02562 * 8 7 5 10 10 C 1.38467 * 120.24765 * 359.97438 * 9 8 7 11 11 C 1.38389 * 120.32498 * 0.04302 * 10 9 8 12 12 F 1.35101 * 119.96055 * 179.97438 * 11 10 9 13 13 C 1.38539 * 120.07127 * 359.67843 * 11 10 9 14 14 F 1.35108 * 120.12102 * 180.29757 * 13 11 10 15 15 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 16 16 O 1.21283 * 119.99478 * 244.99823 * 15 2 1 17 17 N 1.34773 * 120.00430 * 64.99170 * 15 2 1 18 18 C 1.46506 * 119.99969 * 0.02562 * 17 15 2 19 19 C 1.46499 * 120.00036 * 179.72648 * 17 15 2 20 20 C 1.50703 * 109.47126 * 270.27831 * 19 17 15 21 21 H 1.08002 * 119.99820 * 359.97438 * 20 19 17 22 22 C 1.37876 * 119.99889 * 180.02562 * 20 19 17 23 23 N 1.31518 * 120.00192 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00045 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46980 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47015 * 119.99649 * 24 22 20 27 27 H 1.48496 * 109.47036 * 240.00093 * 24 22 20 28 28 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 29 29 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 30 30 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.04047 * 0.02562 * 8 7 5 32 32 H 1.07996 * 119.87858 * 180.02562 * 9 8 7 33 33 H 1.07998 * 119.83591 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.46892 * 269.72362 * 18 17 15 35 35 H 1.09000 * 109.46803 * 29.71536 * 18 17 15 36 36 H 1.09000 * 109.47214 * 149.72329 * 18 17 15 37 37 H 1.08994 * 109.47173 * 30.28203 * 19 17 15 38 38 H 1.09005 * 109.47077 * 150.28374 * 19 17 15 39 39 H 0.96995 * 119.99689 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0667 2.2851 6 8 1.9969 1.2609 2.2545 7 6 2.7098 -0.5610 3.5269 8 6 2.9646 -1.9344 3.5660 9 6 3.4233 -2.5156 4.7283 10 6 3.6334 -1.7436 5.8584 11 6 3.3840 -0.3826 5.8312 12 9 3.5911 0.3635 6.9383 13 6 2.9282 0.2164 4.6682 14 9 2.6901 1.5461 4.6388 15 6 2.0324 -0.7103 -1.2306 16 8 2.6530 -1.7465 -1.1216 17 7 1.7918 -0.1940 -2.4521 18 6 1.0425 1.0580 -2.5836 19 6 2.2854 -0.8814 -3.6479 20 6 3.6681 -0.3821 -3.9797 21 1 4.1325 0.3722 -3.3618 22 6 4.3397 -0.8874 -5.0726 23 7 3.7739 -1.8055 -5.8254 24 14 6.0533 -0.2679 -5.4843 25 1 6.4616 0.7563 -4.4897 26 1 7.0114 -1.4018 -5.4482 27 1 6.0492 0.3337 -6.8419 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.8022 -2.5397 2.6863 32 1 3.6204 -3.5770 4.7577 33 1 3.9934 -2.2059 6.7657 34 1 -0.0212 0.8370 -2.6727 35 1 1.2123 1.6773 -1.7029 36 1 1.3786 1.5909 -3.4731 37 1 2.3218 -1.9546 -3.4611 38 1 1.6162 -0.6807 -4.4846 39 1 4.2463 -2.1607 -6.5945 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726681807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:53 Heat of formation + Delta-G solvation = -170.285918 kcal Electronic energy + Delta-G solvation = -27454.663154 eV Core-core repulsion = 22999.381996 eV Total energy + Delta-G solvation = -4455.281158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.82246 -48.88488 -40.84988 -39.34677 -38.63380 -36.46103 -34.97278 -32.98136 -32.17723 -31.24970 -30.81026 -27.75270 -26.25054 -25.49488 -24.25354 -23.25569 -22.57050 -21.19964 -19.03569 -18.80412 -17.92904 -17.52409 -17.04363 -16.81849 -16.55414 -16.50677 -16.03924 -15.75946 -15.32092 -15.23852 -15.21140 -14.66454 -14.63007 -14.24292 -13.62619 -13.51220 -13.28263 -12.98929 -12.57557 -12.48619 -12.39340 -12.22730 -12.15411 -12.12842 -11.73050 -11.48775 -11.24077 -10.93514 -10.79259 -10.72450 -10.61880 -10.20430 -9.67033 -9.66285 -9.21737 -8.97662 -8.48484 -7.77875 -6.09457 -4.14436 -0.00552 0.46527 2.11317 2.18991 3.03458 3.19975 3.27560 3.28368 3.35442 3.40240 3.74804 3.89677 4.09885 4.23393 4.39026 4.42104 4.61324 4.76029 4.90798 5.02613 5.08059 5.20482 5.25436 5.43197 5.48092 5.57217 5.60010 5.61161 5.69766 5.81377 5.94741 6.16657 6.18486 6.24688 6.93154 7.34108 7.41020 7.52984 7.86638 8.16027 8.23485 8.79321 8.94594 9.50954 10.98709 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002840 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.911968 B = 9855.802632 C =10404.086766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.108 0.892 4 O -0.317 6.317 5 C 0.507 3.493 6 O -0.490 6.490 7 C -0.132 4.132 8 C -0.037 4.037 9 C -0.114 4.114 10 C -0.091 4.091 11 C 0.052 3.948 12 F -0.124 7.124 13 C 0.131 3.869 14 F -0.103 7.103 15 C 0.510 3.490 16 O -0.520 6.520 17 N -0.594 5.594 18 C 0.075 3.925 19 C 0.246 3.754 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.283 1.283 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 0.929 21.486 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.126 0.874 4 O -0.232 6.232 5 C 0.351 3.649 6 O -0.379 6.379 7 C -0.134 4.134 8 C -0.055 4.055 9 C -0.132 4.132 10 C -0.110 4.110 11 C 0.032 3.968 12 F -0.102 7.102 13 C 0.110 3.890 14 F -0.081 7.081 15 C 0.294 3.706 16 O -0.395 6.395 17 N -0.328 5.328 18 C -0.069 4.069 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.209 1.209 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.180 0.820 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.506 0.704 21.339 22.049 hybrid contribution 0.940 0.992 -0.173 1.378 sum -4.565 1.696 21.166 21.719 Atomic orbital electron populations 1.22293 0.92133 1.04157 1.04202 1.22713 0.95872 0.97756 0.82390 0.87443 1.86614 1.76639 1.40722 1.19243 1.20683 0.75183 0.85109 0.83950 1.90897 1.47443 1.15390 1.84155 1.19046 1.08510 0.94827 0.91064 1.21687 0.92002 0.92253 0.99560 1.21158 0.99275 1.01353 0.91372 1.21406 0.97990 0.90689 1.00886 1.17438 1.06425 0.90262 0.82706 1.91563 1.92834 1.76186 1.49661 1.17639 0.99808 0.78769 0.92775 1.91641 1.91040 1.28778 1.96648 1.19704 0.81196 0.85949 0.83774 1.90699 1.39687 1.23408 1.85748 1.48071 1.53849 1.23994 1.06872 1.21864 0.95408 0.86704 1.02905 1.19370 0.94287 0.93853 0.79705 1.21465 1.00896 1.23127 1.11305 0.92349 1.24931 0.98253 0.94862 0.95988 1.69937 1.38035 1.28183 1.17118 0.86431 0.84096 0.78779 0.78071 1.19781 1.20801 1.20896 0.91217 0.89108 0.90821 0.81998 0.82994 0.82914 0.93020 0.92307 0.90221 0.93590 0.94533 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.27 37.16 0.34 -1.80 16 2 C 0.07 1.15 2.17 -27.88 -0.06 1.09 16 3 H 0.11 1.70 6.15 -51.93 -0.32 1.38 16 4 O -0.32 -5.13 8.67 -47.22 -0.41 -5.54 16 5 C 0.51 7.67 7.87 34.54 0.27 7.94 16 6 O -0.49 -8.34 14.60 -19.26 -0.28 -8.62 16 7 C -0.13 -1.61 5.88 -104.94 -0.62 -2.23 16 8 C -0.04 -0.34 9.61 -39.17 -0.38 -0.72 16 9 C -0.11 -0.72 10.02 -39.65 -0.40 -1.12 16 10 C -0.09 -0.60 10.01 -39.44 -0.39 -0.99 16 11 C 0.05 0.50 7.30 -39.42 -0.29 0.21 16 12 F -0.12 -1.29 17.18 2.25 0.04 -1.25 16 13 C 0.13 1.58 7.29 -38.88 -0.28 1.30 16 14 F -0.10 -1.48 15.47 2.25 0.03 -1.44 16 15 C 0.51 10.60 7.10 -10.99 -0.08 10.52 16 16 O -0.52 -13.00 16.09 -14.05 -0.23 -13.22 16 17 N -0.59 -12.31 2.86 -182.95 -0.52 -12.83 16 18 C 0.08 1.14 8.92 59.85 0.53 1.67 16 19 C 0.25 6.29 5.16 -5.19 -0.03 6.27 16 20 C -0.53 -14.83 9.38 -34.44 -0.32 -15.16 16 21 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 24 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.00 5.12 -51.93 -0.27 0.74 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.16 1.47 7.61 -52.48 -0.40 1.07 16 32 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 33 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 34 H 0.05 0.64 7.04 -51.93 -0.37 0.28 16 35 H 0.06 0.76 6.06 -51.93 -0.31 0.45 16 36 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.05 1.32 7.43 -51.93 -0.39 0.93 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -34.79 348.53 -6.32 -41.11 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -4.12 Total: -3.36 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -1.79 Total: 8.64 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.21 Total: -38.25 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.92 Total: -27.38 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.07 Total: -2.70 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.79 -6.32 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726681807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.178 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds