Wall clock time and date at job start Tue Mar 31 2020 15:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34725 * 116.99964 * 270.00078 * 4 2 1 6 6 O 1.21487 * 120.00363 * 0.02562 * 5 4 2 7 7 C 1.47578 * 120.00139 * 180.02562 * 5 4 2 8 8 C 1.39739 * 120.15713 * 359.97438 * 7 5 4 9 9 C 1.37817 * 119.91949 * 180.02562 * 8 7 5 10 10 C 1.38467 * 120.24765 * 359.97438 * 9 8 7 11 11 C 1.38389 * 120.32498 * 0.04302 * 10 9 8 12 12 F 1.35101 * 119.96055 * 179.97438 * 11 10 9 13 13 C 1.38539 * 120.07127 * 359.67843 * 11 10 9 14 14 F 1.35108 * 120.12102 * 180.29757 * 13 11 10 15 15 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 16 16 O 1.21283 * 119.99478 * 244.99823 * 15 2 1 17 17 N 1.34773 * 120.00430 * 64.99170 * 15 2 1 18 18 C 1.46506 * 119.99969 * 0.02562 * 17 15 2 19 19 C 1.46499 * 120.00036 * 179.72648 * 17 15 2 20 20 C 1.50703 * 109.47126 * 270.27831 * 19 17 15 21 21 H 1.08002 * 119.99820 * 359.97438 * 20 19 17 22 22 C 1.37876 * 119.99889 * 180.02562 * 20 19 17 23 23 N 1.31518 * 120.00192 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00045 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46980 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47015 * 119.99649 * 24 22 20 27 27 H 1.48496 * 109.47036 * 240.00093 * 24 22 20 28 28 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 29 29 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 30 30 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.04047 * 0.02562 * 8 7 5 32 32 H 1.07996 * 119.87858 * 180.02562 * 9 8 7 33 33 H 1.07998 * 119.83591 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.46892 * 269.72362 * 18 17 15 35 35 H 1.09000 * 109.46803 * 29.71536 * 18 17 15 36 36 H 1.09000 * 109.47214 * 149.72329 * 18 17 15 37 37 H 1.08994 * 109.47173 * 30.28203 * 19 17 15 38 38 H 1.09005 * 109.47077 * 150.28374 * 19 17 15 39 39 H 0.96995 * 119.99689 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0667 2.2851 6 8 1.9969 1.2609 2.2545 7 6 2.7098 -0.5610 3.5269 8 6 2.9646 -1.9344 3.5660 9 6 3.4233 -2.5156 4.7283 10 6 3.6334 -1.7436 5.8584 11 6 3.3840 -0.3826 5.8312 12 9 3.5911 0.3635 6.9383 13 6 2.9282 0.2164 4.6682 14 9 2.6901 1.5461 4.6388 15 6 2.0324 -0.7103 -1.2306 16 8 2.6530 -1.7465 -1.1216 17 7 1.7918 -0.1940 -2.4521 18 6 1.0425 1.0580 -2.5836 19 6 2.2854 -0.8814 -3.6479 20 6 3.6681 -0.3821 -3.9797 21 1 4.1325 0.3722 -3.3618 22 6 4.3397 -0.8874 -5.0726 23 7 3.7739 -1.8055 -5.8254 24 14 6.0533 -0.2679 -5.4843 25 1 6.4616 0.7563 -4.4897 26 1 7.0114 -1.4018 -5.4482 27 1 6.0492 0.3337 -6.8419 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.8022 -2.5397 2.6863 32 1 3.6204 -3.5770 4.7577 33 1 3.9934 -2.2059 6.7657 34 1 -0.0212 0.8370 -2.6727 35 1 1.2123 1.6773 -1.7029 36 1 1.3786 1.5909 -3.4731 37 1 2.3218 -1.9546 -3.4611 38 1 1.6162 -0.6807 -4.4846 39 1 4.2463 -2.1607 -6.5945 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726681807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:52 Heat of formation + Delta-G solvation = -191.178055 kcal Electronic energy + Delta-G solvation = -27455.569105 eV Core-core repulsion = 22999.381996 eV Total energy + Delta-G solvation = -4456.187109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.67504 -49.74721 -42.06278 -40.69976 -39.63583 -37.73617 -36.71599 -34.92500 -33.38164 -32.28919 -31.53984 -29.61558 -27.69360 -26.53363 -25.75898 -24.32327 -23.79582 -22.35800 -20.49129 -19.86621 -18.86197 -18.70486 -18.53688 -18.01578 -17.82746 -17.66807 -17.30634 -17.08260 -16.73035 -16.40310 -16.13891 -15.90069 -15.83878 -15.47913 -14.88212 -14.85269 -14.39388 -14.19623 -14.06261 -13.74982 -13.55295 -13.36603 -13.27825 -13.13728 -13.03388 -12.93874 -12.83272 -12.64849 -12.54008 -12.23933 -12.02808 -11.83994 -11.70222 -10.66103 -10.65547 -10.39732 -9.96435 -9.53559 -8.24975 -6.39281 -0.80771 -0.25367 0.99467 1.16766 1.35906 1.38008 1.49420 1.59226 2.22543 2.26683 2.39241 2.55505 3.05152 3.11066 3.21586 3.35239 3.51945 3.60903 3.71027 3.79438 4.02175 4.23907 4.32976 4.51643 4.58202 4.59297 4.66569 4.81948 4.84634 4.92915 4.94245 5.03603 5.07346 5.11100 5.20558 5.49701 5.51855 5.76434 6.02291 6.33522 6.57600 6.69446 7.17695 7.34208 8.82479 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002840 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.911968 B = 9855.802632 C =10404.086766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 H 0.113 0.887 4 O -0.328 6.328 5 C 0.506 3.494 6 O -0.517 6.517 7 C -0.155 4.155 8 C -0.038 4.038 9 C -0.092 4.092 10 C -0.065 4.065 11 C 0.046 3.954 12 F -0.130 7.130 13 C 0.104 3.896 14 F -0.126 7.126 15 C 0.502 3.498 16 O -0.574 6.574 17 N -0.599 5.599 18 C 0.067 3.933 19 C 0.260 3.740 20 C -0.547 4.547 21 H 0.050 0.950 22 C 0.012 3.988 23 N -0.925 5.925 24 Si 0.965 3.035 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.268 1.268 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.195 0.805 33 H 0.195 0.805 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.005 0.995 38 H 0.034 0.966 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 0.649 23.140 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.131 0.869 4 O -0.243 6.243 5 C 0.352 3.648 6 O -0.408 6.408 7 C -0.157 4.157 8 C -0.056 4.056 9 C -0.109 4.109 10 C -0.084 4.084 11 C 0.026 3.974 12 F -0.109 7.109 13 C 0.084 3.916 14 F -0.104 7.104 15 C 0.289 3.711 16 O -0.453 6.453 17 N -0.331 5.331 18 C -0.074 4.074 19 C 0.139 3.861 20 C -0.586 4.586 21 H 0.068 0.932 22 C -0.188 4.188 23 N -0.564 5.564 24 Si 0.790 3.210 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.193 1.193 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.212 0.788 33 H 0.212 0.788 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.023 0.977 38 H 0.052 0.948 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.244 0.461 23.001 23.595 hybrid contribution 0.847 0.996 -0.627 1.450 sum -4.397 1.458 22.374 22.848 Atomic orbital electron populations 1.22303 0.88968 1.04763 1.05874 1.22617 0.98047 0.96701 0.80567 0.86943 1.86613 1.76989 1.41205 1.19520 1.21225 0.74422 0.84907 0.84260 1.90865 1.48906 1.16423 1.84557 1.18998 1.10768 0.96091 0.89837 1.21837 0.91931 0.90923 1.00913 1.21615 0.96556 1.03126 0.89652 1.21895 0.95218 0.88933 1.02311 1.17676 1.06645 0.91379 0.81720 1.91548 1.92910 1.76678 1.49732 1.17951 1.01689 0.78035 0.93942 1.91569 1.91566 1.30451 1.96847 1.20495 0.80183 0.85452 0.84970 1.90658 1.42089 1.25886 1.86682 1.48042 1.53954 1.25386 1.05682 1.22203 0.96636 0.84573 1.04023 1.18865 0.93733 0.91978 0.81484 1.21717 1.02163 1.23180 1.11491 0.93155 1.25797 1.02255 0.94928 0.95815 1.70037 1.39720 1.29071 1.17590 0.85400 0.79015 0.78220 0.78367 1.19552 1.20543 1.19279 0.89664 0.87201 0.90789 0.82180 0.78836 0.78833 0.89507 0.89678 0.90660 0.97727 0.94775 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.27 71.98 0.67 -3.16 16 2 C 0.08 2.55 2.17 29.85 0.06 2.61 16 3 H 0.11 3.52 6.15 -2.39 -0.01 3.51 16 4 O -0.33 -10.79 8.67 -49.97 -0.43 -11.23 16 5 C 0.51 15.64 7.87 70.29 0.55 16.19 16 6 O -0.52 -18.02 14.60 19.88 0.29 -17.73 16 7 C -0.15 -3.77 5.88 -20.07 -0.12 -3.89 16 8 C -0.04 -0.64 9.61 22.53 0.22 -0.43 16 9 C -0.09 -0.82 10.02 22.22 0.22 -0.59 16 10 C -0.07 -0.60 10.01 22.36 0.22 -0.38 16 11 C 0.05 0.81 7.30 22.38 0.16 0.98 16 12 F -0.13 -2.55 17.18 44.97 0.77 -1.77 16 13 C 0.10 2.53 7.29 22.72 0.17 2.70 16 14 F -0.13 -3.78 15.47 44.97 0.70 -3.08 16 15 C 0.50 21.37 7.10 87.66 0.62 21.99 16 16 O -0.57 -29.97 16.09 15.71 0.25 -29.71 16 17 N -0.60 -25.08 2.86 -851.12 -2.43 -27.51 16 18 C 0.07 1.95 8.92 127.77 1.14 3.09 16 19 C 0.26 13.75 5.16 85.63 0.44 14.20 16 20 C -0.55 -31.37 9.38 25.60 0.24 -31.13 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 22 C 0.01 0.66 5.46 84.65 0.46 1.12 16 23 N -0.92 -55.00 13.29 21.45 0.28 -54.72 16 24 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.11 2.14 5.12 -2.38 -0.01 2.13 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.16 2.79 7.61 -2.91 -0.02 2.77 16 32 H 0.19 0.20 8.06 -2.91 -0.02 0.18 16 33 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 34 H 0.09 1.93 7.04 -2.39 -0.02 1.92 16 35 H 0.08 2.03 6.06 -2.39 -0.01 2.02 16 36 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 37 H 0.00 0.28 7.43 -2.39 -0.02 0.26 16 38 H 0.03 1.80 8.07 -2.38 -0.02 1.78 16 39 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -80.47 348.53 7.63 -72.84 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 1.11 Total: 2.85 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: 5.07 Total: 23.29 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -2.15 Total: -82.23 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: 0.11 Total: -58.67 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 1.47 Total: -4.86 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -80.47 7.63 -72.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726681807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.338 kcal (2) G-P(sol) polarization free energy of solvation -80.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds