Wall clock time and date at job start Tue Mar 31 2020 15:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.45194 * 109.47339 * 239.99705 * 2 1 3 5 5 C 1.34731 * 116.99863 * 90.00293 * 4 2 1 6 6 O 1.21484 * 120.00219 * 359.97438 * 5 4 2 7 7 C 1.47569 * 120.00127 * 180.02562 * 5 4 2 8 8 C 1.39746 * 120.16322 * 359.71985 * 7 5 4 9 9 C 1.37819 * 119.92039 * 179.76758 * 8 7 5 10 10 C 1.38461 * 120.25188 * 0.51036 * 9 8 7 11 11 C 1.38390 * 120.32107 * 359.74446 * 10 9 8 12 12 F 1.35096 * 119.95727 * 179.97438 * 11 10 9 13 13 C 1.38535 * 120.07791 * 359.97438 * 11 10 9 14 14 F 1.35102 * 120.12318 * 179.97438 * 13 11 10 15 15 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 16 16 O 1.21280 * 119.99888 * 115.00096 * 15 2 1 17 17 N 1.34777 * 119.99928 * 295.00204 * 15 2 1 18 18 C 1.46496 * 119.99889 * 359.97438 * 17 15 2 19 19 C 1.46500 * 119.99779 * 179.97438 * 17 15 2 20 20 C 1.50694 * 109.46954 * 89.99836 * 19 17 15 21 21 H 1.08003 * 120.00102 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99994 * 179.97438 * 20 19 17 23 23 N 1.31509 * 120.00205 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00154 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46984 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46858 * 120.00458 * 24 22 20 27 27 H 1.48495 * 109.47352 * 240.00328 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.08000 * 120.03036 * 0.02562 * 8 7 5 32 32 H 1.08003 * 119.87711 * 180.25241 * 9 8 7 33 33 H 1.07989 * 119.84004 * 179.75979 * 10 9 8 34 34 H 1.09003 * 109.47373 * 90.00178 * 18 17 15 35 35 H 1.09005 * 109.46584 * 209.99714 * 18 17 15 36 36 H 1.08999 * 109.47384 * 329.99408 * 18 17 15 37 37 H 1.08993 * 109.47001 * 209.99914 * 19 17 15 38 38 H 1.09002 * 109.47216 * 330.00108 * 19 17 15 39 39 H 0.97004 * 120.00789 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2180 0.0668 -2.2851 6 8 1.9970 1.2610 -2.2545 7 6 2.7087 -0.5611 -3.5271 8 6 2.9686 -1.9337 -3.5648 9 6 3.4222 -2.5157 -4.7288 10 6 3.6318 -1.7439 -5.8590 11 6 3.3828 -0.3828 -5.8316 12 9 3.5903 0.3634 -6.9385 13 6 2.9210 0.2153 -4.6705 14 9 2.6782 1.5440 -4.6425 15 6 2.0323 -0.7104 1.2306 16 8 2.6530 -1.7466 1.1216 17 7 1.7919 -0.1941 2.4521 18 6 1.0426 1.0579 2.5836 19 6 2.2797 -0.8849 3.6483 20 6 3.6613 -0.3877 3.9871 21 1 4.1290 0.3678 3.3731 22 6 4.3279 -0.8963 5.0817 23 7 3.7582 -1.8158 5.8296 24 14 6.0402 -0.2794 5.5022 25 1 6.4531 0.7479 4.5125 26 1 6.0309 0.3187 6.8614 27 1 6.9976 -1.4140 5.4672 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 2.8101 -2.5382 -2.6840 32 1 3.6189 -3.5773 -4.7583 33 1 3.9910 -2.2062 -6.7664 34 1 -0.0215 0.8374 2.6677 35 1 1.3754 1.5884 3.4758 36 1 1.2166 1.6795 1.7052 37 1 1.6071 -0.6858 4.4825 38 1 2.3160 -1.9578 3.4589 39 1 4.2273 -2.1740 6.5995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726681808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:56 Heat of formation + Delta-G solvation = -170.288395 kcal Electronic energy + Delta-G solvation = -27452.478850 eV Core-core repulsion = 22997.197585 eV Total energy + Delta-G solvation = -4455.281265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.82426 -48.88645 -40.84994 -39.34670 -38.63404 -36.46149 -34.97380 -32.98175 -32.17769 -31.24956 -30.81019 -27.75359 -26.25112 -25.49571 -24.25333 -23.25568 -22.56981 -21.19958 -19.03632 -18.80440 -17.92983 -17.52477 -17.04343 -16.81864 -16.55404 -16.50751 -16.03976 -15.76067 -15.32026 -15.23957 -15.21174 -14.66507 -14.63192 -14.24182 -13.62800 -13.51234 -13.28296 -12.99024 -12.57400 -12.48821 -12.39311 -12.22759 -12.15455 -12.12881 -11.73058 -11.48671 -11.24107 -10.93480 -10.79288 -10.72500 -10.61887 -10.20407 -9.66976 -9.66298 -9.21758 -8.97662 -8.48515 -7.77899 -6.09416 -4.14393 -0.00627 0.46507 2.11432 2.18858 3.03418 3.19972 3.27578 3.28336 3.35458 3.40234 3.74764 3.89684 4.09859 4.23339 4.39011 4.42110 4.61324 4.75988 4.90766 5.02615 5.08031 5.20464 5.25468 5.43164 5.48084 5.57232 5.59986 5.61125 5.69735 5.81350 5.94757 6.16639 6.18497 6.24673 6.93203 7.33979 7.41055 7.52954 7.86627 8.16149 8.23468 8.79335 8.94591 9.50975 10.98740 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.002836 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.059399 B = 9871.023649 C =10418.239550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.108 0.892 4 O -0.317 6.317 5 C 0.507 3.493 6 O -0.490 6.490 7 C -0.132 4.132 8 C -0.037 4.037 9 C -0.114 4.114 10 C -0.091 4.091 11 C 0.052 3.948 12 F -0.124 7.124 13 C 0.131 3.869 14 F -0.103 7.103 15 C 0.510 3.490 16 O -0.520 6.520 17 N -0.594 5.594 18 C 0.075 3.925 19 C 0.246 3.754 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.750 0.949 -21.504 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.126 0.874 4 O -0.232 6.232 5 C 0.351 3.649 6 O -0.379 6.379 7 C -0.135 4.135 8 C -0.055 4.055 9 C -0.132 4.132 10 C -0.110 4.110 11 C 0.032 3.968 12 F -0.102 7.102 13 C 0.110 3.890 14 F -0.081 7.081 15 C 0.294 3.706 16 O -0.395 6.395 17 N -0.328 5.328 18 C -0.069 4.069 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.180 0.820 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.472 0.726 -21.357 22.059 hybrid contribution 0.935 0.989 0.177 1.372 sum -4.536 1.715 -21.180 21.728 Atomic orbital electron populations 1.22293 0.92133 1.04157 1.04205 1.22714 0.95871 0.97756 0.82389 0.87444 1.86615 1.76640 1.40718 1.19249 1.20681 0.75178 0.85110 0.83953 1.90896 1.47432 1.15393 1.84161 1.19050 1.08532 0.94864 0.91008 1.21688 0.91984 0.92245 0.99579 1.21158 0.99305 1.01348 0.91349 1.21403 0.98002 0.90675 1.00887 1.17437 1.06363 0.90276 0.82756 1.91561 1.92825 1.76181 1.49677 1.17640 0.99756 0.78805 0.92792 1.91639 1.90955 1.28860 1.96652 1.19707 0.81207 0.85938 0.83777 1.90699 1.39682 1.23414 1.85748 1.48068 1.53954 1.23904 1.06856 1.21863 0.95393 0.86699 1.02925 1.19368 0.94361 0.93793 0.79690 1.21462 1.00992 1.23043 1.11291 0.92344 1.24929 0.98238 0.94863 0.96000 1.69933 1.38050 1.28053 1.17239 0.86431 0.84088 0.78774 0.78084 1.19780 1.20903 1.20798 0.90821 0.91216 0.89107 0.81998 0.82994 0.82914 0.93029 0.90213 0.92306 0.94542 0.93591 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.28 37.16 0.34 -1.80 16 2 C 0.07 1.15 2.17 -27.88 -0.06 1.09 16 3 H 0.11 1.70 6.15 -51.93 -0.32 1.38 16 4 O -0.32 -5.13 8.67 -47.24 -0.41 -5.54 16 5 C 0.51 7.66 7.87 34.54 0.27 7.94 16 6 O -0.49 -8.33 14.60 -19.25 -0.28 -8.61 16 7 C -0.13 -1.61 5.88 -104.93 -0.62 -2.23 16 8 C -0.04 -0.34 9.61 -39.17 -0.38 -0.72 16 9 C -0.11 -0.72 10.02 -39.65 -0.40 -1.12 16 10 C -0.09 -0.60 10.01 -39.44 -0.39 -0.99 16 11 C 0.05 0.50 7.30 -39.42 -0.29 0.21 16 12 F -0.12 -1.29 17.18 2.25 0.04 -1.25 16 13 C 0.13 1.58 7.29 -38.88 -0.28 1.29 16 14 F -0.10 -1.48 15.46 2.25 0.03 -1.44 16 15 C 0.51 10.60 7.10 -10.98 -0.08 10.52 16 16 O -0.52 -12.99 16.09 -14.05 -0.23 -13.22 16 17 N -0.59 -12.30 2.86 -182.96 -0.52 -12.83 16 18 C 0.08 1.14 8.92 59.84 0.53 1.67 16 19 C 0.25 6.29 5.16 -5.20 -0.03 6.27 16 20 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 21 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 24 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.00 5.12 -51.93 -0.27 0.74 16 31 H 0.16 1.47 7.61 -52.49 -0.40 1.07 16 32 H 0.15 0.52 8.06 -52.48 -0.42 0.09 16 33 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 34 H 0.05 0.64 7.02 -51.93 -0.36 0.28 16 35 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 36 H 0.06 0.76 6.08 -51.93 -0.32 0.45 16 37 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -34.79 348.52 -6.32 -41.10 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -4.12 Total: -3.36 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -1.79 Total: 8.64 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.21 Total: -38.25 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.92 Total: -27.37 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.07 Total: -2.69 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.79 -6.32 -41.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726681808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.185 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds