Wall clock time and date at job start Tue Mar 31 2020 15:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.45194 * 109.47339 * 239.99705 * 2 1 3 5 5 C 1.34731 * 116.99863 * 90.00293 * 4 2 1 6 6 O 1.21484 * 120.00219 * 359.97438 * 5 4 2 7 7 C 1.47569 * 120.00127 * 180.02562 * 5 4 2 8 8 C 1.39746 * 120.16322 * 359.71985 * 7 5 4 9 9 C 1.37819 * 119.92039 * 179.76758 * 8 7 5 10 10 C 1.38461 * 120.25188 * 0.51036 * 9 8 7 11 11 C 1.38390 * 120.32107 * 359.74446 * 10 9 8 12 12 F 1.35096 * 119.95727 * 179.97438 * 11 10 9 13 13 C 1.38535 * 120.07791 * 359.97438 * 11 10 9 14 14 F 1.35102 * 120.12318 * 179.97438 * 13 11 10 15 15 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 16 16 O 1.21280 * 119.99888 * 115.00096 * 15 2 1 17 17 N 1.34777 * 119.99928 * 295.00204 * 15 2 1 18 18 C 1.46496 * 119.99889 * 359.97438 * 17 15 2 19 19 C 1.46500 * 119.99779 * 179.97438 * 17 15 2 20 20 C 1.50694 * 109.46954 * 89.99836 * 19 17 15 21 21 H 1.08003 * 120.00102 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99994 * 179.97438 * 20 19 17 23 23 N 1.31509 * 120.00205 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00154 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46984 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46858 * 120.00458 * 24 22 20 27 27 H 1.48495 * 109.47352 * 240.00328 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.08000 * 120.03036 * 0.02562 * 8 7 5 32 32 H 1.08003 * 119.87711 * 180.25241 * 9 8 7 33 33 H 1.07989 * 119.84004 * 179.75979 * 10 9 8 34 34 H 1.09003 * 109.47373 * 90.00178 * 18 17 15 35 35 H 1.09005 * 109.46584 * 209.99714 * 18 17 15 36 36 H 1.08999 * 109.47384 * 329.99408 * 18 17 15 37 37 H 1.08993 * 109.47001 * 209.99914 * 19 17 15 38 38 H 1.09002 * 109.47216 * 330.00108 * 19 17 15 39 39 H 0.97004 * 120.00789 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2180 0.0668 -2.2851 6 8 1.9970 1.2610 -2.2545 7 6 2.7087 -0.5611 -3.5271 8 6 2.9686 -1.9337 -3.5648 9 6 3.4222 -2.5157 -4.7288 10 6 3.6318 -1.7439 -5.8590 11 6 3.3828 -0.3828 -5.8316 12 9 3.5903 0.3634 -6.9385 13 6 2.9210 0.2153 -4.6705 14 9 2.6782 1.5440 -4.6425 15 6 2.0323 -0.7104 1.2306 16 8 2.6530 -1.7466 1.1216 17 7 1.7919 -0.1941 2.4521 18 6 1.0426 1.0579 2.5836 19 6 2.2797 -0.8849 3.6483 20 6 3.6613 -0.3877 3.9871 21 1 4.1290 0.3678 3.3731 22 6 4.3279 -0.8963 5.0817 23 7 3.7582 -1.8158 5.8296 24 14 6.0402 -0.2794 5.5022 25 1 6.4531 0.7479 4.5125 26 1 6.0309 0.3187 6.8614 27 1 6.9976 -1.4140 5.4672 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 2.8101 -2.5382 -2.6840 32 1 3.6189 -3.5773 -4.7583 33 1 3.9910 -2.2062 -6.7664 34 1 -0.0215 0.8374 2.6677 35 1 1.3754 1.5884 3.4758 36 1 1.2166 1.6795 1.7052 37 1 1.6071 -0.6858 4.4825 38 1 2.3160 -1.9578 3.4589 39 1 4.2273 -2.1740 6.5995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726681808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:55 Heat of formation + Delta-G solvation = -191.175556 kcal Electronic energy + Delta-G solvation = -27453.384586 eV Core-core repulsion = 22997.197585 eV Total energy + Delta-G solvation = -4456.187001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.67634 -49.74825 -42.06248 -40.69978 -39.63528 -37.73625 -36.71677 -34.92559 -33.38133 -32.28891 -31.53944 -29.61645 -27.69389 -26.53406 -25.75847 -24.32249 -23.79558 -22.35763 -20.49172 -19.86586 -18.86205 -18.70453 -18.53757 -18.01547 -17.82529 -17.67019 -17.30528 -17.08434 -16.72995 -16.40392 -16.13923 -15.90031 -15.83894 -15.47913 -14.88266 -14.85294 -14.39371 -14.19738 -14.06297 -13.75104 -13.55295 -13.36482 -13.27654 -13.13915 -13.03252 -12.93873 -12.83291 -12.64714 -12.54051 -12.23890 -12.02804 -11.84003 -11.70143 -10.66121 -10.65521 -10.39702 -9.96418 -9.53550 -8.24921 -6.39225 -0.80807 -0.25352 0.99619 1.16681 1.35991 1.37995 1.49470 1.59223 2.22483 2.26685 2.39306 2.55527 3.05197 3.11125 3.21619 3.35212 3.51930 3.60898 3.71035 3.79463 4.02188 4.23902 4.32998 4.51478 4.58178 4.59300 4.66610 4.81986 4.84631 4.92976 4.94256 5.03622 5.07366 5.11110 5.20510 5.49715 5.51866 5.76449 6.02411 6.33532 6.57635 6.69479 7.17703 7.34232 8.82524 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.002836 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.059399 B = 9871.023649 C =10418.239550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 H 0.113 0.887 4 O -0.328 6.328 5 C 0.506 3.494 6 O -0.517 6.517 7 C -0.155 4.155 8 C -0.038 4.038 9 C -0.092 4.092 10 C -0.065 4.065 11 C 0.046 3.954 12 F -0.130 7.130 13 C 0.105 3.895 14 F -0.126 7.126 15 C 0.502 3.498 16 O -0.574 6.574 17 N -0.599 5.599 18 C 0.067 3.933 19 C 0.260 3.740 20 C -0.547 4.547 21 H 0.050 0.950 22 C 0.012 3.988 23 N -0.925 5.925 24 Si 0.965 3.035 25 H -0.271 1.271 26 H -0.268 1.268 27 H -0.280 1.280 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.161 0.839 32 H 0.195 0.805 33 H 0.195 0.805 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.034 0.966 38 H 0.005 0.995 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 0.671 -23.157 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.131 0.869 4 O -0.243 6.243 5 C 0.352 3.648 6 O -0.407 6.407 7 C -0.157 4.157 8 C -0.056 4.056 9 C -0.110 4.110 10 C -0.084 4.084 11 C 0.026 3.974 12 F -0.109 7.109 13 C 0.084 3.916 14 F -0.104 7.104 15 C 0.289 3.711 16 O -0.453 6.453 17 N -0.331 5.331 18 C -0.074 4.074 19 C 0.139 3.861 20 C -0.585 4.585 21 H 0.069 0.931 22 C -0.188 4.188 23 N -0.564 5.564 24 Si 0.790 3.210 25 H -0.195 1.195 26 H -0.193 1.193 27 H -0.205 1.205 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.178 0.822 32 H 0.212 0.788 33 H 0.212 0.788 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.052 0.948 38 H 0.023 0.977 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.206 0.485 -23.017 23.603 hybrid contribution 0.841 0.993 0.631 1.446 sum -4.365 1.477 -22.386 22.856 Atomic orbital electron populations 1.22303 0.88973 1.04759 1.05876 1.22617 0.98040 0.96705 0.80565 0.86937 1.86615 1.76990 1.41201 1.19526 1.21223 0.74417 0.84909 0.84263 1.90865 1.48896 1.16425 1.84561 1.19001 1.10794 0.96129 0.89777 1.21838 0.91909 0.90918 1.00936 1.21615 0.96586 1.03121 0.89629 1.21893 0.95230 0.88919 1.02311 1.17675 1.06577 0.91394 0.81776 1.91547 1.92901 1.76672 1.49749 1.17951 1.01631 0.78075 0.93954 1.91567 1.91482 1.30530 1.96850 1.20498 0.80193 0.85442 0.84973 1.90657 1.42082 1.25894 1.86682 1.48039 1.54070 1.25289 1.05666 1.22202 0.96628 0.84569 1.04033 1.18863 0.93799 0.91931 0.81465 1.21715 1.02254 1.23095 1.11485 0.93149 1.25795 1.02235 0.94924 0.95838 1.70033 1.39737 1.28940 1.17709 0.85399 0.79017 0.78221 0.78364 1.19546 1.19296 1.20535 0.90792 0.89663 0.87202 0.82187 0.78836 0.78835 0.89517 0.90652 0.89677 0.94786 0.97728 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.28 71.98 0.67 -3.16 16 2 C 0.08 2.55 2.17 29.85 0.06 2.61 16 3 H 0.11 3.52 6.15 -2.39 -0.01 3.51 16 4 O -0.33 -10.79 8.67 -50.04 -0.43 -11.23 16 5 C 0.51 15.63 7.87 70.28 0.55 16.19 16 6 O -0.52 -18.01 14.60 19.89 0.29 -17.72 16 7 C -0.15 -3.77 5.88 -20.07 -0.12 -3.89 16 8 C -0.04 -0.64 9.61 22.54 0.22 -0.43 16 9 C -0.09 -0.82 10.02 22.22 0.22 -0.59 16 10 C -0.07 -0.60 10.01 22.36 0.22 -0.38 16 11 C 0.05 0.81 7.30 22.38 0.16 0.98 16 12 F -0.13 -2.55 17.18 44.97 0.77 -1.77 16 13 C 0.10 2.53 7.29 22.72 0.17 2.69 16 14 F -0.13 -3.77 15.46 44.97 0.70 -3.08 16 15 C 0.50 21.36 7.10 87.66 0.62 21.98 16 16 O -0.57 -29.96 16.09 15.72 0.25 -29.71 16 17 N -0.60 -25.08 2.86 -851.14 -2.43 -27.51 16 18 C 0.07 1.95 8.92 127.77 1.14 3.09 16 19 C 0.26 13.76 5.16 85.63 0.44 14.20 16 20 C -0.55 -31.37 9.39 25.60 0.24 -31.13 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 22 C 0.01 0.66 5.46 84.66 0.46 1.12 16 23 N -0.92 -55.00 13.29 21.45 0.28 -54.72 16 24 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.11 2.14 5.12 -2.38 -0.01 2.13 16 31 H 0.16 2.79 7.61 -2.91 -0.02 2.77 16 32 H 0.19 0.20 8.06 -2.91 -0.02 0.18 16 33 H 0.19 0.28 8.06 -2.92 -0.02 0.25 16 34 H 0.09 1.93 7.02 -2.39 -0.02 1.91 16 35 H 0.07 2.27 8.07 -2.38 -0.02 2.25 16 36 H 0.08 2.03 6.08 -2.39 -0.01 2.02 16 37 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 38 H 0.00 0.28 7.42 -2.39 -0.02 0.26 16 39 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -80.45 348.52 7.63 -72.83 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 1.11 Total: 2.85 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: 5.07 Total: 23.29 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.15 Total: -82.23 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: 0.11 Total: -58.65 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 1.47 Total: -4.85 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -80.45 7.63 -72.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726681808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.350 kcal (2) G-P(sol) polarization free energy of solvation -80.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds