Wall clock time and date at job start Tue Mar 31 2020 15:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47004 * 2 1 4 4 O 1.45206 * 109.46951 * 119.99577 * 2 1 3 5 5 C 1.34745 * 117.00023 * 269.99942 * 4 2 1 6 6 O 1.21512 * 119.99974 * 0.02562 * 5 4 2 7 7 C 1.47403 * 119.99821 * 179.97438 * 5 4 2 8 8 C 1.39966 * 120.19267 * 89.73339 * 7 5 4 9 9 F 1.35096 * 120.09871 * 359.97438 * 8 7 5 10 10 C 1.38215 * 119.79854 * 179.72237 * 8 7 5 11 11 C 1.38311 * 120.19095 * 0.57319 * 10 8 7 12 12 C 1.38309 * 120.40164 * 359.67478 * 11 10 8 13 13 C 1.38206 * 120.19541 * 0.04900 * 12 11 10 14 14 F 1.35095 * 120.09843 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47330 * 239.99705 * 2 1 3 16 16 O 1.21280 * 120.00060 * 258.92683 * 15 2 1 17 17 N 1.34785 * 119.99813 * 78.65753 * 15 2 1 18 18 C 1.46503 * 119.99934 * 356.10907 * 17 15 2 19 19 C 1.46492 * 119.99699 * 176.11633 * 17 15 2 20 20 C 1.50695 * 109.47395 * 89.99847 * 19 17 15 21 21 H 1.08004 * 119.99881 * 0.02562 * 20 19 17 22 22 C 1.37878 * 120.00412 * 179.97438 * 20 19 17 23 23 N 1.31517 * 119.99464 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00281 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46979 * 60.00341 * 24 22 20 26 26 H 1.48510 * 109.46778 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47196 * 299.99754 * 24 22 20 28 28 H 1.08998 * 109.47224 * 68.08801 * 1 2 3 29 29 H 1.09004 * 109.46773 * 188.08448 * 1 2 3 30 30 H 1.08997 * 109.47100 * 308.08942 * 1 2 3 31 31 H 1.08000 * 119.89891 * 180.29126 * 10 8 7 32 32 H 1.08008 * 119.79333 * 179.70288 * 11 10 8 33 33 H 1.08006 * 119.89675 * 180.02562 * 12 11 10 34 34 H 1.09001 * 109.46576 * 91.92283 * 18 17 15 35 35 H 1.08996 * 109.47221 * 211.92491 * 18 17 15 36 36 H 1.08996 * 109.47084 * 331.93108 * 18 17 15 37 37 H 1.09008 * 109.47024 * 209.99376 * 19 17 15 38 38 H 1.08999 * 109.47645 * 329.99505 * 19 17 15 39 39 H 0.97005 * 119.99745 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2179 0.0670 2.2854 6 8 1.9969 1.2615 2.2546 7 6 2.7080 -0.5601 3.5260 8 6 4.0829 -0.6635 3.7670 9 9 4.9668 -0.1889 2.8623 10 6 4.5334 -1.2479 4.9357 11 6 3.6302 -1.7404 5.8601 12 6 2.2699 -1.6472 5.6280 13 6 1.8014 -1.0609 4.4674 14 9 0.4723 -0.9704 4.2429 15 6 2.0324 -0.7104 -1.2304 16 8 2.4247 -1.8553 -1.1518 17 7 2.0406 -0.0753 -2.4192 18 6 1.4827 1.2746 -2.5323 19 6 2.6073 -0.7349 -3.5981 20 6 1.5280 -1.5128 -4.3059 21 1 0.5206 -1.5152 -3.9167 22 6 1.8264 -2.2205 -5.4509 23 7 3.0529 -2.2163 -5.9256 24 14 0.4887 -3.1854 -6.3279 25 1 -0.5932 -2.2600 -6.7499 26 1 1.0630 -3.8529 -7.5237 27 1 -0.0669 -4.2098 -5.4076 28 1 -0.3633 0.3835 -0.9534 29 1 -0.3633 -1.0175 0.1445 30 1 -0.3633 0.6339 0.8088 31 1 5.5938 -1.3243 5.1254 32 1 3.9894 -2.2002 6.7691 33 1 1.5718 -2.0341 6.3556 34 1 2.2728 2.0087 -2.3744 35 1 1.0551 1.4090 -3.5258 36 1 0.7051 1.4105 -1.7806 37 1 3.0159 0.0167 -4.2737 38 1 3.4010 -1.4145 -3.2879 39 1 3.2630 -2.7145 -6.7310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728918969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:03 Heat of formation + Delta-G solvation = -169.290014 kcal Electronic energy + Delta-G solvation = -27751.282731 eV Core-core repulsion = 23296.044759 eV Total energy + Delta-G solvation = -4455.237972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.50367 -49.44525 -40.81357 -39.29081 -38.67590 -36.48302 -34.89473 -32.90999 -32.23965 -31.29354 -30.91470 -27.76729 -26.16565 -25.45449 -24.15904 -23.38034 -22.62341 -21.19082 -18.98410 -18.81596 -18.28537 -17.84778 -17.10367 -16.54725 -16.36477 -16.23479 -16.14385 -15.73630 -15.73511 -15.55191 -15.08777 -14.85092 -14.54329 -14.33488 -13.59821 -13.31093 -13.26728 -12.93705 -12.53257 -12.52777 -12.43506 -12.33160 -12.14638 -12.07639 -11.71272 -11.46249 -11.23476 -10.94891 -10.87473 -10.79171 -10.56386 -10.16960 -9.67231 -9.65815 -9.30327 -8.92818 -8.44395 -7.73510 -6.05475 -4.10447 0.20045 0.43659 1.74881 2.22142 2.79000 3.21463 3.22658 3.32118 3.36379 3.40311 3.75146 3.82337 4.11983 4.23824 4.39161 4.44132 4.55329 4.78905 4.96349 5.06335 5.09524 5.16855 5.29000 5.32798 5.41461 5.46582 5.57864 5.61562 5.68791 5.87683 6.05012 6.11065 6.19675 6.23775 6.96864 7.37465 7.39922 7.48218 7.90035 8.19909 8.27631 8.83360 8.98039 9.54336 11.02756 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019482 B = 0.002920 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.849865 B = 9587.370192 C = 9736.928301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.068 3.932 3 H 0.105 0.895 4 O -0.312 6.312 5 C 0.517 3.483 6 O -0.484 6.484 7 C -0.177 4.177 8 C 0.174 3.826 9 F -0.116 7.116 10 C -0.164 4.164 11 C -0.039 4.039 12 C -0.165 4.165 13 C 0.172 3.828 14 F -0.118 7.118 15 C 0.508 3.492 16 O -0.515 6.515 17 N -0.596 5.596 18 C 0.071 3.929 19 C 0.247 3.753 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 5.174 24.598 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.010 3.990 3 H 0.123 0.877 4 O -0.227 6.227 5 C 0.358 3.642 6 O -0.371 6.371 7 C -0.180 4.180 8 C 0.154 3.846 9 F -0.094 7.094 10 C -0.182 4.182 11 C -0.057 4.057 12 C -0.183 4.183 13 C 0.152 3.848 14 F -0.096 7.096 15 C 0.292 3.708 16 O -0.390 6.390 17 N -0.329 5.329 18 C -0.073 4.073 19 C 0.129 3.871 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.727 3.273 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.281 4.871 24.342 24.826 hybrid contribution -0.866 -0.208 -0.926 1.285 sum -1.147 4.663 23.416 23.903 Atomic orbital electron populations 1.22227 0.91868 1.04347 1.04038 1.22818 0.96304 0.97484 0.82391 0.87715 1.86787 1.75881 1.40744 1.19241 1.20627 0.74489 0.85239 0.83866 1.90871 1.46856 1.15337 1.84080 1.19092 0.93269 1.10094 0.95528 1.17302 0.84164 0.95073 0.88019 1.91620 1.66890 1.85247 1.65643 1.21212 1.02400 1.01720 0.92905 1.21069 0.91395 0.94651 0.98626 1.21183 0.97385 1.02934 0.96840 1.17253 0.77161 0.96619 0.93736 1.91594 1.29867 1.93581 1.94605 1.19701 0.80362 0.87009 0.83700 1.90713 1.46578 1.16596 1.85142 1.48090 1.59298 1.16053 1.09491 1.21887 0.98018 0.83927 1.03474 1.19352 0.94637 0.92940 0.80183 1.21377 0.95813 1.30306 1.09190 0.92388 1.24938 0.95708 0.96346 0.97087 1.69925 1.18467 1.42159 1.22812 0.86535 0.81656 0.80232 0.78869 1.20229 1.21151 1.20122 0.89146 0.90420 0.91091 0.82800 0.82980 0.82870 0.93296 0.90144 0.91968 0.94543 0.93787 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.15 37.16 0.34 -2.13 16 2 C 0.07 1.21 2.15 -27.88 -0.06 1.15 16 3 H 0.11 1.70 6.44 -51.93 -0.33 1.37 16 4 O -0.31 -5.76 9.50 -47.07 -0.45 -6.20 16 5 C 0.52 8.48 6.66 34.46 0.23 8.70 16 6 O -0.48 -8.42 16.37 -19.28 -0.32 -8.74 16 7 C -0.18 -2.33 5.76 -104.87 -0.60 -2.94 16 8 C 0.17 2.00 7.29 -38.94 -0.28 1.71 16 9 F -0.12 -1.56 16.83 2.25 0.04 -1.52 16 10 C -0.16 -1.17 10.01 -39.56 -0.40 -1.57 16 11 C -0.04 -0.20 10.03 -39.53 -0.40 -0.60 16 12 C -0.16 -1.11 10.01 -39.57 -0.40 -1.51 16 13 C 0.17 1.86 7.29 -38.95 -0.28 1.57 16 14 F -0.12 -1.41 16.83 2.25 0.04 -1.38 16 15 C 0.51 11.31 6.94 -10.98 -0.08 11.23 16 16 O -0.52 -13.80 16.23 -13.30 -0.22 -14.02 16 17 N -0.60 -13.00 2.86 -182.96 -0.52 -13.52 16 18 C 0.07 1.14 9.83 59.85 0.59 1.73 16 19 C 0.25 6.55 5.14 -5.20 -0.03 6.52 16 20 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 21 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 24 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H 0.09 1.23 6.08 -51.93 -0.32 0.91 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.15 0.23 8.06 -52.48 -0.42 -0.20 16 33 H 0.15 0.61 8.06 -52.48 -0.42 0.18 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 36 H 0.06 0.84 4.59 -51.93 -0.24 0.60 16 37 H 0.04 0.96 8.07 -51.92 -0.42 0.54 16 38 H 0.04 1.31 7.48 -51.93 -0.39 0.92 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -36.13 353.33 -6.37 -42.50 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.20 Total: -3.58 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -1.79 Total: 10.18 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.21 Total: -39.49 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.98 Total: -28.96 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.13 -6.37 -42.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728918969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.787 kcal (2) G-P(sol) polarization free energy of solvation -36.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds