Wall clock time and date at job start Tue Mar 31 2020 15:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47004 * 2 1 4 4 O 1.45206 * 109.46951 * 119.99577 * 2 1 3 5 5 C 1.34745 * 117.00023 * 269.99942 * 4 2 1 6 6 O 1.21512 * 119.99974 * 0.02562 * 5 4 2 7 7 C 1.47403 * 119.99821 * 179.97438 * 5 4 2 8 8 C 1.39966 * 120.19267 * 89.73339 * 7 5 4 9 9 F 1.35096 * 120.09871 * 359.97438 * 8 7 5 10 10 C 1.38215 * 119.79854 * 179.72237 * 8 7 5 11 11 C 1.38311 * 120.19095 * 0.57319 * 10 8 7 12 12 C 1.38309 * 120.40164 * 359.67478 * 11 10 8 13 13 C 1.38206 * 120.19541 * 0.04900 * 12 11 10 14 14 F 1.35095 * 120.09843 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47330 * 239.99705 * 2 1 3 16 16 O 1.21280 * 120.00060 * 258.92683 * 15 2 1 17 17 N 1.34785 * 119.99813 * 78.65753 * 15 2 1 18 18 C 1.46503 * 119.99934 * 356.10907 * 17 15 2 19 19 C 1.46492 * 119.99699 * 176.11633 * 17 15 2 20 20 C 1.50695 * 109.47395 * 89.99847 * 19 17 15 21 21 H 1.08004 * 119.99881 * 0.02562 * 20 19 17 22 22 C 1.37878 * 120.00412 * 179.97438 * 20 19 17 23 23 N 1.31517 * 119.99464 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00281 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46979 * 60.00341 * 24 22 20 26 26 H 1.48510 * 109.46778 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47196 * 299.99754 * 24 22 20 28 28 H 1.08998 * 109.47224 * 68.08801 * 1 2 3 29 29 H 1.09004 * 109.46773 * 188.08448 * 1 2 3 30 30 H 1.08997 * 109.47100 * 308.08942 * 1 2 3 31 31 H 1.08000 * 119.89891 * 180.29126 * 10 8 7 32 32 H 1.08008 * 119.79333 * 179.70288 * 11 10 8 33 33 H 1.08006 * 119.89675 * 180.02562 * 12 11 10 34 34 H 1.09001 * 109.46576 * 91.92283 * 18 17 15 35 35 H 1.08996 * 109.47221 * 211.92491 * 18 17 15 36 36 H 1.08996 * 109.47084 * 331.93108 * 18 17 15 37 37 H 1.09008 * 109.47024 * 209.99376 * 19 17 15 38 38 H 1.08999 * 109.47645 * 329.99505 * 19 17 15 39 39 H 0.97005 * 119.99745 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2179 0.0670 2.2854 6 8 1.9969 1.2615 2.2546 7 6 2.7080 -0.5601 3.5260 8 6 4.0829 -0.6635 3.7670 9 9 4.9668 -0.1889 2.8623 10 6 4.5334 -1.2479 4.9357 11 6 3.6302 -1.7404 5.8601 12 6 2.2699 -1.6472 5.6280 13 6 1.8014 -1.0609 4.4674 14 9 0.4723 -0.9704 4.2429 15 6 2.0324 -0.7104 -1.2304 16 8 2.4247 -1.8553 -1.1518 17 7 2.0406 -0.0753 -2.4192 18 6 1.4827 1.2746 -2.5323 19 6 2.6073 -0.7349 -3.5981 20 6 1.5280 -1.5128 -4.3059 21 1 0.5206 -1.5152 -3.9167 22 6 1.8264 -2.2205 -5.4509 23 7 3.0529 -2.2163 -5.9256 24 14 0.4887 -3.1854 -6.3279 25 1 -0.5932 -2.2600 -6.7499 26 1 1.0630 -3.8529 -7.5237 27 1 -0.0669 -4.2098 -5.4076 28 1 -0.3633 0.3835 -0.9534 29 1 -0.3633 -1.0175 0.1445 30 1 -0.3633 0.6339 0.8088 31 1 5.5938 -1.3243 5.1254 32 1 3.9894 -2.2002 6.7691 33 1 1.5718 -2.0341 6.3556 34 1 2.2728 2.0087 -2.3744 35 1 1.0551 1.4090 -3.5258 36 1 0.7051 1.4105 -1.7806 37 1 3.0159 0.0167 -4.2737 38 1 3.4010 -1.4145 -3.2879 39 1 3.2630 -2.7145 -6.7310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728918969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:03 Heat of formation + Delta-G solvation = -191.869663 kcal Electronic energy + Delta-G solvation = -27752.261858 eV Core-core repulsion = 23296.044759 eV Total energy + Delta-G solvation = -4456.217099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.34471 -50.30530 -42.13954 -40.73105 -39.63356 -37.86053 -36.76017 -34.91543 -33.48155 -32.39893 -31.55403 -29.72562 -27.70762 -26.56289 -25.74336 -24.21585 -24.06849 -22.40368 -20.57995 -19.90233 -19.21023 -18.73671 -18.69078 -18.46302 -17.71601 -17.29642 -17.10461 -17.03659 -16.86247 -16.60702 -16.39064 -16.19063 -15.93633 -15.55707 -14.94259 -14.86122 -14.44030 -14.17350 -13.97475 -13.75710 -13.66916 -13.42167 -13.22807 -13.17985 -13.13177 -13.02674 -12.93256 -12.69412 -12.54492 -12.22169 -12.15860 -12.05862 -11.76597 -10.74508 -10.66277 -10.36285 -9.97445 -9.59652 -8.25168 -6.39996 -0.52348 -0.20822 0.52289 1.01479 1.36022 1.40962 1.46797 1.52644 2.15086 2.20100 2.38929 2.48392 3.04874 3.14249 3.15279 3.28564 3.56018 3.58480 3.65115 3.69938 4.05508 4.17809 4.33877 4.46913 4.49050 4.50818 4.59365 4.77907 4.80618 4.83574 4.91982 4.98364 5.00216 5.05012 5.14387 5.46677 5.54612 5.73278 6.00162 6.13156 6.50316 6.67617 7.11900 7.31906 8.82536 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019482 B = 0.002920 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.849865 B = 9587.370192 C = 9736.928301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.076 3.924 3 H 0.121 0.879 4 O -0.335 6.335 5 C 0.516 3.484 6 O -0.503 6.503 7 C -0.215 4.215 8 C 0.141 3.859 9 F -0.139 7.139 10 C -0.149 4.149 11 C -0.015 4.015 12 C -0.146 4.146 13 C 0.149 3.851 14 F -0.133 7.133 15 C 0.501 3.499 16 O -0.574 6.574 17 N -0.599 5.599 18 C 0.063 3.937 19 C 0.260 3.740 20 C -0.546 4.546 21 H 0.057 0.943 22 C 0.008 3.992 23 N -0.928 5.928 24 Si 0.970 3.030 25 H -0.258 1.258 26 H -0.278 1.278 27 H -0.278 1.278 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.184 0.816 32 H 0.206 0.794 33 H 0.189 0.811 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.033 0.967 38 H -0.002 1.002 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.633 5.097 27.174 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.139 0.861 4 O -0.250 6.250 5 C 0.358 3.642 6 O -0.391 6.391 7 C -0.217 4.217 8 C 0.122 3.878 9 F -0.118 7.118 10 C -0.167 4.167 11 C -0.032 4.032 12 C -0.165 4.165 13 C 0.130 3.870 14 F -0.111 7.111 15 C 0.287 3.713 16 O -0.454 6.454 17 N -0.331 5.331 18 C -0.078 4.078 19 C 0.140 3.860 20 C -0.584 4.584 21 H 0.075 0.925 22 C -0.191 4.191 23 N -0.568 5.568 24 Si 0.794 3.206 25 H -0.182 1.182 26 H -0.203 1.203 27 H -0.204 1.204 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.202 0.798 32 H 0.223 0.777 33 H 0.207 0.793 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.051 0.949 38 H 0.016 0.984 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.414 4.855 26.929 27.399 hybrid contribution -0.434 -0.189 -1.604 1.672 sum -1.848 4.666 25.325 25.817 Atomic orbital electron populations 1.22239 0.89318 1.04478 1.05732 1.22732 0.98011 0.96994 0.80497 0.86112 1.86795 1.76378 1.41891 1.19970 1.21286 0.73605 0.85176 0.84095 1.90823 1.47808 1.16020 1.84434 1.19233 0.94704 1.12984 0.94830 1.17792 0.83353 0.97180 0.89507 1.91554 1.67417 1.85949 1.66847 1.21689 1.04479 0.99490 0.91076 1.21737 0.90142 0.92086 0.99241 1.21702 0.98931 1.00488 0.95342 1.17651 0.76370 0.98075 0.94930 1.91551 1.30769 1.93888 1.94877 1.20516 0.79222 0.86544 0.84992 1.90667 1.49177 1.19328 1.86197 1.48086 1.58859 1.17863 1.08269 1.22222 0.99621 0.81177 1.04799 1.18870 0.93416 0.92235 0.81509 1.21648 0.96026 1.31033 1.09698 0.92523 1.25882 0.98164 0.97211 0.97870 1.70047 1.20486 1.42915 1.23329 0.85434 0.78924 0.78717 0.77543 1.18249 1.20276 1.20360 0.87660 0.91341 0.88810 0.79832 0.77678 0.79348 0.90884 0.89931 0.88769 0.94883 0.98420 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 9.15 71.98 0.66 -3.97 16 2 C 0.08 2.73 2.15 29.85 0.06 2.80 16 3 H 0.12 3.92 6.44 -2.39 -0.02 3.90 16 4 O -0.33 -12.95 9.50 -50.37 -0.48 -13.43 16 5 C 0.52 17.61 6.66 70.24 0.47 18.08 16 6 O -0.50 -17.94 16.37 19.80 0.32 -17.62 16 7 C -0.21 -5.79 5.76 -20.03 -0.12 -5.90 16 8 C 0.14 3.24 7.29 22.68 0.17 3.41 16 9 F -0.14 -3.96 16.83 44.97 0.76 -3.20 16 10 C -0.15 -1.71 10.01 22.28 0.22 -1.49 16 11 C -0.01 -0.08 10.03 22.30 0.22 0.14 16 12 C -0.15 -1.45 10.01 22.28 0.22 -1.22 16 13 C 0.15 3.10 7.29 22.68 0.17 3.27 16 14 F -0.13 -3.15 16.83 44.97 0.76 -2.40 16 15 C 0.50 23.21 6.94 87.65 0.61 23.82 16 16 O -0.57 -32.74 16.23 15.00 0.24 -32.50 16 17 N -0.60 -26.85 2.86 -851.15 -2.43 -29.28 16 18 C 0.06 1.99 9.83 127.77 1.26 3.25 16 19 C 0.26 14.43 5.14 85.63 0.44 14.87 16 20 C -0.55 -31.90 9.39 25.60 0.24 -31.66 16 21 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 22 C 0.01 0.46 5.46 84.65 0.46 0.92 16 23 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 24 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 28 H 0.10 2.68 6.08 -2.39 -0.01 2.66 16 29 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 32 H 0.21 -0.93 8.06 -2.91 -0.02 -0.95 16 33 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 2.58 8.09 -2.39 -0.02 2.56 16 36 H 0.09 2.35 4.59 -2.39 -0.01 2.33 16 37 H 0.03 1.83 8.07 -2.38 -0.02 1.81 16 38 H 0.00 -0.15 7.48 -2.39 -0.02 -0.17 16 39 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -85.83 353.33 7.67 -78.17 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.10 Total: 3.12 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: 5.08 Total: 26.31 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.15 Total: -85.73 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: 0.09 Total: -63.55 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 1.51 Total: -5.60 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -85.83 7.67 -78.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728918969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.704 kcal (2) G-P(sol) polarization free energy of solvation -85.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds