Wall clock time and date at job start Tue Mar 31 2020 15:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 O 1.45202 * 109.47243 * 240.00758 * 2 1 3 5 5 C 1.34745 * 117.00327 * 89.99640 * 4 2 1 6 6 O 1.21507 * 119.99923 * 359.97438 * 5 4 2 7 7 C 1.47401 * 119.99582 * 180.02562 * 5 4 2 8 8 C 1.39958 * 120.19768 * 89.73054 * 7 5 4 9 9 F 1.35098 * 120.09904 * 359.96980 * 8 7 5 10 10 C 1.38217 * 119.80187 * 179.73949 * 8 7 5 11 11 C 1.38308 * 120.19170 * 0.52777 * 10 8 7 12 12 C 1.38314 * 120.39977 * 359.72115 * 11 10 8 13 13 C 1.38207 * 120.19403 * 0.02575 * 12 11 10 14 14 F 1.35101 * 120.09842 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 16 16 O 1.21281 * 119.99422 * 114.99967 * 15 2 1 17 17 N 1.34769 * 120.00321 * 295.00799 * 15 2 1 18 18 C 1.46502 * 120.00154 * 359.97438 * 17 15 2 19 19 C 1.46499 * 119.99994 * 180.02562 * 17 15 2 20 20 C 1.50703 * 109.47449 * 89.99815 * 19 17 15 21 21 H 1.08002 * 119.99722 * 359.97438 * 20 19 17 22 22 C 1.37871 * 119.99952 * 180.02562 * 20 19 17 23 23 N 1.31508 * 120.00278 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99701 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47289 * 90.00146 * 24 22 20 26 26 H 1.48498 * 109.47104 * 209.99801 * 24 22 20 27 27 H 1.48499 * 109.47137 * 329.99741 * 24 22 20 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.07995 * 119.90057 * 180.24992 * 10 8 7 32 32 H 1.07999 * 119.79950 * 179.74439 * 11 10 8 33 33 H 1.08002 * 119.89860 * 179.97438 * 12 11 10 34 34 H 1.08990 * 109.47314 * 89.99806 * 18 17 15 35 35 H 1.08998 * 109.47376 * 210.01109 * 18 17 15 36 36 H 1.09005 * 109.46677 * 330.00437 * 18 17 15 37 37 H 1.09007 * 109.46830 * 209.99384 * 19 17 15 38 38 H 1.08993 * 109.47505 * 329.99405 * 19 17 15 39 39 H 0.97003 * 120.00108 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6843 -1.1857 5 6 2.2180 0.0671 -2.2854 6 8 1.9969 1.2615 -2.2546 7 6 2.7081 -0.5601 -3.5260 8 6 1.8017 -1.0659 -4.4648 9 9 0.4727 -0.9817 -4.2371 10 6 2.2702 -1.6475 -5.6278 11 6 3.6305 -1.7402 -5.8601 12 6 4.5336 -1.2478 -4.9355 13 6 4.0829 -0.6583 -3.7695 14 9 4.9668 -0.1784 -2.8674 15 6 2.0324 -0.7104 1.2304 16 8 2.6530 -1.7466 1.1214 17 7 1.7919 -0.1943 2.4520 18 6 1.0425 1.0576 2.5837 19 6 2.2807 -0.8847 3.6480 20 6 3.6621 -0.3862 3.9866 21 1 4.1293 0.3690 3.3719 22 6 4.3297 -0.8950 5.0802 23 7 3.7611 -1.8150 5.8284 24 14 6.0422 -0.2776 5.4994 25 1 5.9383 0.8860 6.4162 26 1 6.8112 -1.3620 6.1611 27 1 6.7386 0.1340 4.2540 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.5721 -2.0347 -6.3552 32 1 3.9896 -2.1997 -6.7691 33 1 5.5941 -1.3248 -5.1250 34 1 -0.0215 0.8371 2.6678 35 1 1.3754 1.5882 3.4758 36 1 1.2164 1.6792 1.7053 37 1 1.6082 -0.6860 4.4826 38 1 2.3179 -1.9574 3.4588 39 1 4.2307 -2.1727 6.5981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728918970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:06 Heat of formation + Delta-G solvation = -169.088907 kcal Electronic energy + Delta-G solvation = -27820.236381 eV Core-core repulsion = 23365.007129 eV Total energy + Delta-G solvation = -4455.229252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.49562 -49.39432 -40.79571 -39.28713 -38.66925 -36.45931 -34.93570 -32.95269 -32.21013 -31.25995 -30.89137 -27.72167 -26.21870 -25.43378 -24.18647 -23.35549 -22.60616 -21.18579 -18.98088 -18.80520 -18.27034 -17.82189 -17.09828 -16.55784 -16.31932 -16.21407 -16.11535 -15.73633 -15.70422 -15.52847 -15.15462 -14.82774 -14.58414 -14.20530 -13.56684 -13.40592 -13.25051 -12.94960 -12.50791 -12.47771 -12.42147 -12.34430 -12.17298 -12.10010 -11.70558 -11.46554 -11.20539 -10.93203 -10.86011 -10.77926 -10.57983 -10.17285 -9.65943 -9.63263 -9.27956 -8.93170 -8.45189 -7.74340 -6.06191 -4.11161 0.22297 0.45930 1.77682 2.24938 2.81229 3.23519 3.24497 3.30348 3.36989 3.42643 3.75469 3.84817 4.13652 4.26018 4.39224 4.44783 4.57335 4.79360 4.93571 5.04559 5.10854 5.19437 5.28497 5.34277 5.43878 5.49583 5.59892 5.62613 5.63297 5.83821 5.97355 6.12991 6.20412 6.22452 6.96148 7.37709 7.41174 7.48928 7.89797 8.19483 8.26915 8.83176 8.98093 9.53991 11.01970 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.003294 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.357824 B = 8497.438364 C = 9538.835521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.067 3.933 3 H 0.108 0.892 4 O -0.311 6.311 5 C 0.517 3.483 6 O -0.485 6.485 7 C -0.177 4.177 8 C 0.171 3.829 9 F -0.119 7.119 10 C -0.165 4.165 11 C -0.039 4.039 12 C -0.164 4.164 13 C 0.176 3.824 14 F -0.114 7.114 15 C 0.509 3.491 16 O -0.517 6.517 17 N -0.595 5.595 18 C 0.075 3.925 19 C 0.247 3.753 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 2.691 -23.822 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.126 0.874 4 O -0.226 6.226 5 C 0.358 3.642 6 O -0.372 6.372 7 C -0.180 4.180 8 C 0.152 3.848 9 F -0.097 7.097 10 C -0.184 4.184 11 C -0.057 4.057 12 C -0.182 4.182 13 C 0.156 3.844 14 F -0.092 7.092 15 C 0.293 3.707 16 O -0.393 6.393 17 N -0.328 5.328 18 C -0.068 4.068 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.171 0.829 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.991 2.393 -23.574 24.215 hybrid contribution 0.821 0.669 0.671 1.254 sum -4.170 3.062 -22.904 23.481 Atomic orbital electron populations 1.22294 0.92006 1.04264 1.04204 1.22777 0.96020 0.97745 0.82556 0.87447 1.86767 1.75916 1.40714 1.19178 1.20611 0.74473 0.85234 0.83840 1.90871 1.46871 1.15330 1.84084 1.19090 0.93287 1.10044 0.95553 1.17247 0.77123 0.96724 0.93748 1.91588 1.29911 1.93655 1.94568 1.21171 0.97367 1.03084 0.96781 1.21064 0.91398 0.94682 0.98605 1.21219 1.02423 1.01640 0.92962 1.17319 0.84208 0.94863 0.88053 1.91638 1.66853 1.84996 1.65762 1.19688 0.81253 0.85969 0.83759 1.90712 1.39517 1.23353 1.85694 1.48063 1.54019 1.23948 1.06805 1.21858 0.95399 0.86707 1.02885 1.19363 0.94328 0.93813 0.79661 1.21434 1.01033 1.23054 1.11327 0.92391 1.24927 0.98239 0.94840 0.96020 1.69927 1.38177 1.27981 1.17208 0.86480 0.84016 0.78369 0.78491 1.20580 1.21013 1.19847 0.90763 0.89002 0.91205 0.82899 0.82998 0.82791 0.93030 0.90188 0.92364 0.94526 0.93609 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.28 37.16 0.34 -2.01 16 2 C 0.07 1.20 2.17 -27.88 -0.06 1.14 16 3 H 0.11 1.82 6.15 -51.93 -0.32 1.51 16 4 O -0.31 -5.82 9.43 -47.28 -0.45 -6.27 16 5 C 0.52 8.71 6.66 34.46 0.23 8.94 16 6 O -0.48 -8.67 16.37 -19.27 -0.32 -8.98 16 7 C -0.18 -2.40 5.76 -104.88 -0.60 -3.00 16 8 C 0.17 1.87 7.29 -38.95 -0.28 1.58 16 9 F -0.12 -1.41 16.83 2.25 0.04 -1.37 16 10 C -0.17 -1.14 10.01 -39.56 -0.40 -1.54 16 11 C -0.04 -0.22 10.03 -39.53 -0.40 -0.61 16 12 C -0.16 -1.25 10.01 -39.56 -0.40 -1.65 16 13 C 0.18 2.12 7.29 -38.95 -0.28 1.84 16 14 F -0.11 -1.66 16.83 2.25 0.04 -1.62 16 15 C 0.51 11.33 7.10 -10.99 -0.08 11.25 16 16 O -0.52 -13.88 16.09 -14.05 -0.23 -14.10 16 17 N -0.59 -12.89 2.86 -182.96 -0.52 -13.41 16 18 C 0.08 1.20 8.92 59.85 0.53 1.73 16 19 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 20 C -0.53 -15.23 9.39 -34.44 -0.32 -15.55 16 21 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 22 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 24 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.10 5.12 -51.93 -0.27 0.83 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.15 0.26 8.06 -52.49 -0.42 -0.16 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.05 0.67 7.02 -51.93 -0.36 0.31 16 35 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 36 H 0.06 0.79 6.08 -51.93 -0.32 0.48 16 37 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 38 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -36.43 351.58 -6.41 -42.84 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -4.15 Total: -3.83 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -1.84 Total: 10.28 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.21 Total: -39.34 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.99 Total: -29.35 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.43 -6.41 -42.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728918970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.254 kcal (2) G-P(sol) polarization free energy of solvation -36.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds