Wall clock time and date at job start Tue Mar 31 2020 15:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 O 1.45202 * 109.47243 * 240.00758 * 2 1 3 5 5 C 1.34745 * 117.00327 * 89.99640 * 4 2 1 6 6 O 1.21507 * 119.99923 * 359.97438 * 5 4 2 7 7 C 1.47401 * 119.99582 * 180.02562 * 5 4 2 8 8 C 1.39958 * 120.19768 * 89.73054 * 7 5 4 9 9 F 1.35098 * 120.09904 * 359.96980 * 8 7 5 10 10 C 1.38217 * 119.80187 * 179.73949 * 8 7 5 11 11 C 1.38308 * 120.19170 * 0.52777 * 10 8 7 12 12 C 1.38314 * 120.39977 * 359.72115 * 11 10 8 13 13 C 1.38207 * 120.19403 * 0.02575 * 12 11 10 14 14 F 1.35101 * 120.09842 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 16 16 O 1.21281 * 119.99422 * 114.99967 * 15 2 1 17 17 N 1.34769 * 120.00321 * 295.00799 * 15 2 1 18 18 C 1.46502 * 120.00154 * 359.97438 * 17 15 2 19 19 C 1.46499 * 119.99994 * 180.02562 * 17 15 2 20 20 C 1.50703 * 109.47449 * 89.99815 * 19 17 15 21 21 H 1.08002 * 119.99722 * 359.97438 * 20 19 17 22 22 C 1.37871 * 119.99952 * 180.02562 * 20 19 17 23 23 N 1.31508 * 120.00278 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99701 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47289 * 90.00146 * 24 22 20 26 26 H 1.48498 * 109.47104 * 209.99801 * 24 22 20 27 27 H 1.48499 * 109.47137 * 329.99741 * 24 22 20 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.07995 * 119.90057 * 180.24992 * 10 8 7 32 32 H 1.07999 * 119.79950 * 179.74439 * 11 10 8 33 33 H 1.08002 * 119.89860 * 179.97438 * 12 11 10 34 34 H 1.08990 * 109.47314 * 89.99806 * 18 17 15 35 35 H 1.08998 * 109.47376 * 210.01109 * 18 17 15 36 36 H 1.09005 * 109.46677 * 330.00437 * 18 17 15 37 37 H 1.09007 * 109.46830 * 209.99384 * 19 17 15 38 38 H 1.08993 * 109.47505 * 329.99405 * 19 17 15 39 39 H 0.97003 * 120.00108 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6843 -1.1857 5 6 2.2180 0.0671 -2.2854 6 8 1.9969 1.2615 -2.2546 7 6 2.7081 -0.5601 -3.5260 8 6 1.8017 -1.0659 -4.4648 9 9 0.4727 -0.9817 -4.2371 10 6 2.2702 -1.6475 -5.6278 11 6 3.6305 -1.7402 -5.8601 12 6 4.5336 -1.2478 -4.9355 13 6 4.0829 -0.6583 -3.7695 14 9 4.9668 -0.1784 -2.8674 15 6 2.0324 -0.7104 1.2304 16 8 2.6530 -1.7466 1.1214 17 7 1.7919 -0.1943 2.4520 18 6 1.0425 1.0576 2.5837 19 6 2.2807 -0.8847 3.6480 20 6 3.6621 -0.3862 3.9866 21 1 4.1293 0.3690 3.3719 22 6 4.3297 -0.8950 5.0802 23 7 3.7611 -1.8150 5.8284 24 14 6.0422 -0.2776 5.4994 25 1 5.9383 0.8860 6.4162 26 1 6.8112 -1.3620 6.1611 27 1 6.7386 0.1340 4.2540 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.5721 -2.0347 -6.3552 32 1 3.9896 -2.1997 -6.7691 33 1 5.5941 -1.3248 -5.1250 34 1 -0.0215 0.8371 2.6678 35 1 1.3754 1.5882 3.4758 36 1 1.2164 1.6792 1.7053 37 1 1.6082 -0.6860 4.4826 38 1 2.3179 -1.9574 3.4588 39 1 4.2307 -2.1727 6.5981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728918970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:05 Heat of formation + Delta-G solvation = -192.123890 kcal Electronic energy + Delta-G solvation = -27821.235253 eV Core-core repulsion = 23365.007129 eV Total energy + Delta-G solvation = -4456.228123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.35181 -50.30626 -42.14042 -40.73794 -39.63741 -37.85601 -36.78631 -34.96544 -33.45011 -32.39332 -31.55864 -29.65946 -27.75109 -26.54784 -25.76228 -24.20338 -24.07046 -22.41661 -20.58173 -19.91677 -19.22021 -18.73891 -18.70334 -18.46417 -17.67995 -17.29886 -17.17495 -17.01863 -16.85567 -16.61153 -16.50696 -16.15124 -15.84154 -15.55988 -14.91753 -14.89672 -14.44278 -14.21511 -13.98032 -13.79853 -13.60034 -13.40643 -13.23896 -13.17798 -13.11598 -13.01367 -12.87387 -12.72005 -12.57030 -12.26687 -12.13965 -12.05904 -11.76411 -10.74531 -10.67870 -10.36789 -9.97965 -9.59135 -8.27387 -6.42186 -0.52696 -0.21344 0.52080 1.04120 1.33689 1.36931 1.46372 1.52188 2.14803 2.19803 2.37185 2.48090 3.02486 3.13821 3.15011 3.29302 3.55704 3.57097 3.64685 3.70839 4.05001 4.25296 4.35966 4.47957 4.48826 4.49960 4.61939 4.77720 4.80176 4.85835 4.91817 4.98598 5.00689 5.04409 5.15748 5.45635 5.54263 5.72763 5.99152 6.13026 6.50727 6.65626 7.12088 7.30410 8.80110 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.003294 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.357824 B = 8497.438364 C = 9538.835521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.073 3.927 3 H 0.116 0.884 4 O -0.334 6.334 5 C 0.515 3.485 6 O -0.505 6.505 7 C -0.215 4.215 8 C 0.151 3.849 9 F -0.131 7.131 10 C -0.145 4.145 11 C -0.014 4.014 12 C -0.150 4.150 13 C 0.139 3.861 14 F -0.141 7.141 15 C 0.501 3.499 16 O -0.578 6.578 17 N -0.597 5.597 18 C 0.066 3.934 19 C 0.260 3.740 20 C -0.551 4.551 21 H 0.050 0.950 22 C 0.011 3.989 23 N -0.924 5.924 24 Si 0.967 3.033 25 H -0.260 1.260 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.191 0.809 32 H 0.207 0.793 33 H 0.183 0.817 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.037 0.963 38 H 0.002 0.998 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.112 3.218 -26.520 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 H 0.133 0.867 4 O -0.250 6.250 5 C 0.358 3.642 6 O -0.393 6.393 7 C -0.218 4.218 8 C 0.131 3.869 9 F -0.110 7.110 10 C -0.163 4.163 11 C -0.032 4.032 12 C -0.168 4.168 13 C 0.120 3.880 14 F -0.120 7.120 15 C 0.287 3.713 16 O -0.457 6.457 17 N -0.329 5.329 18 C -0.075 4.075 19 C 0.140 3.860 20 C -0.589 4.589 21 H 0.068 0.932 22 C -0.188 4.188 23 N -0.564 5.564 24 Si 0.791 3.209 25 H -0.185 1.185 26 H -0.203 1.203 27 H -0.202 1.202 28 H 0.089 0.911 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.208 0.792 32 H 0.224 0.776 33 H 0.200 0.800 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.892 2.968 -26.274 26.890 hybrid contribution 0.762 0.452 1.409 1.665 sum -4.129 3.419 -24.865 25.436 Atomic orbital electron populations 1.22310 0.88656 1.04706 1.06139 1.22730 0.98349 0.96765 0.80595 0.86660 1.86773 1.76422 1.41855 1.19921 1.21289 0.73578 0.85168 0.84141 1.90821 1.47915 1.16085 1.84487 1.19235 0.94674 1.12934 0.94909 1.17629 0.76370 0.98021 0.94845 1.91550 1.30665 1.93922 1.94823 1.21708 0.98874 1.00502 0.95259 1.21736 0.90177 0.92069 0.99172 1.21686 1.04485 0.99479 0.91153 1.17837 0.83451 0.97183 0.89578 1.91560 1.67515 1.85799 1.67099 1.20503 0.80231 0.85437 0.85101 1.90666 1.42235 1.26112 1.86723 1.48047 1.53972 1.25376 1.05486 1.22229 0.96675 0.84440 1.04156 1.18875 0.93936 0.91809 0.81395 1.21685 1.02294 1.23277 1.11648 0.93198 1.25823 1.02388 0.94853 0.95774 1.70032 1.39904 1.28793 1.17635 0.85423 0.78703 0.78495 0.78240 1.18492 1.20254 1.20249 0.91109 0.86648 0.89531 0.79178 0.77627 0.79960 0.89365 0.90342 0.89687 0.94509 0.98026 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 9.28 71.98 0.67 -3.65 16 2 C 0.07 2.67 2.17 29.85 0.06 2.74 16 3 H 0.12 3.96 6.15 -2.39 -0.01 3.95 16 4 O -0.33 -13.17 9.43 -50.18 -0.47 -13.64 16 5 C 0.52 18.18 6.66 70.24 0.47 18.65 16 6 O -0.50 -18.71 16.37 19.81 0.32 -18.38 16 7 C -0.21 -5.98 5.76 -20.03 -0.12 -6.10 16 8 C 0.15 3.16 7.29 22.68 0.17 3.33 16 9 F -0.13 -3.08 16.83 44.97 0.76 -2.32 16 10 C -0.15 -1.46 10.01 22.28 0.22 -1.23 16 11 C -0.01 -0.09 10.03 22.30 0.22 0.14 16 12 C -0.15 -1.88 10.01 22.28 0.22 -1.66 16 13 C 0.14 3.40 7.29 22.68 0.17 3.56 16 14 F -0.14 -4.36 16.83 44.97 0.76 -3.61 16 15 C 0.50 23.25 7.10 87.66 0.62 23.88 16 16 O -0.58 -33.07 16.09 15.72 0.25 -32.82 16 17 N -0.60 -26.53 2.86 -851.15 -2.43 -28.96 16 18 C 0.07 2.03 8.92 127.77 1.14 3.17 16 19 C 0.26 14.35 5.16 85.63 0.44 14.79 16 20 C -0.55 -32.66 9.39 25.60 0.24 -32.42 16 21 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 22 C 0.01 0.65 5.46 84.65 0.46 1.12 16 23 N -0.92 -56.30 13.29 21.44 0.28 -56.02 16 24 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 25 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.12 2.49 5.12 -2.39 -0.01 2.47 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16 32 H 0.21 -0.84 8.06 -2.91 -0.02 -0.87 16 33 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.09 2.08 7.02 -2.39 -0.02 2.07 16 35 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 36 H 0.08 2.16 6.08 -2.38 -0.01 2.14 16 37 H 0.04 2.00 8.07 -2.38 -0.02 1.98 16 38 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -87.12 351.58 7.59 -79.53 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: 1.10 Total: 2.02 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: 4.99 Total: 26.31 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -2.15 Total: -84.98 kcal Atomic # 8 Polarization: -64.95 SS G_CDS: 0.10 Total: -64.84 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 1.51 Total: -5.93 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -87.12 7.59 -79.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728918970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.596 kcal (2) G-P(sol) polarization free energy of solvation -87.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds