Wall clock time and date at job start Tue Mar 31 2020 15:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47421 * 2 1 4 4 O 1.45204 * 109.46952 * 119.99918 * 2 1 3 5 5 C 1.34726 * 117.00061 * 269.99845 * 4 2 1 6 6 O 1.21483 * 119.99798 * 0.02562 * 5 4 2 7 7 C 1.47605 * 120.00103 * 179.97438 * 5 4 2 8 8 C 1.39698 * 120.11327 * 359.72954 * 7 5 4 9 9 C 1.37842 * 119.92141 * 179.73918 * 8 7 5 10 10 C 1.38616 * 120.14730 * 0.53606 * 9 8 7 11 11 F 1.35107 * 119.88474 * 179.72005 * 10 9 8 12 12 C 1.38855 * 120.23462 * 359.73642 * 10 9 8 13 13 F 1.35094 * 119.96350 * 179.97438 * 12 10 9 14 14 C 1.38038 * 120.07313 * 359.97438 * 12 10 9 15 15 C 1.50701 * 109.47244 * 239.99600 * 2 1 3 16 16 O 1.21281 * 120.00127 * 256.02472 * 15 2 1 17 17 N 1.34778 * 119.99638 * 76.03248 * 15 2 1 18 18 C 1.46494 * 120.00128 * 5.36492 * 17 15 2 19 19 C 1.46499 * 119.99700 * 185.36122 * 17 15 2 20 20 C 1.50702 * 109.46860 * 89.99917 * 19 17 15 21 21 H 1.07999 * 120.00293 * 0.02562 * 20 19 17 22 22 C 1.37886 * 120.00009 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99899 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99761 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47675 * 89.99696 * 24 22 20 26 26 H 1.48501 * 109.46849 * 209.99988 * 24 22 20 27 27 H 1.48503 * 109.47182 * 329.99508 * 24 22 20 28 28 H 1.09003 * 109.47393 * 306.14069 * 1 2 3 29 29 H 1.08997 * 109.47092 * 186.13632 * 1 2 3 30 30 H 1.09000 * 109.46733 * 66.13837 * 1 2 3 31 31 H 1.08004 * 120.04162 * 359.97438 * 8 7 5 32 32 H 1.07991 * 119.92489 * 180.25326 * 9 8 7 33 33 H 1.07996 * 120.07357 * 180.02562 * 14 12 10 34 34 H 1.08998 * 109.47479 * 84.82343 * 18 17 15 35 35 H 1.09002 * 109.47016 * 204.82429 * 18 17 15 36 36 H 1.09000 * 109.46810 * 324.81906 * 18 17 15 37 37 H 1.09003 * 109.47348 * 209.99678 * 19 17 15 38 38 H 1.09008 * 109.47508 * 330.00271 * 19 17 15 39 39 H 0.96998 * 119.99785 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2179 0.0668 2.2852 6 8 1.9969 1.2610 2.2545 7 6 2.7086 -0.5613 3.5276 8 6 2.9571 -1.9354 3.5675 9 6 3.4204 -2.5169 4.7282 10 6 3.6298 -1.7431 5.8590 11 9 4.0787 -2.3195 6.9955 12 6 3.3795 -0.3776 5.8281 13 9 3.5850 0.3712 6.9335 14 6 2.9210 0.2155 4.6690 15 6 2.0323 -0.7105 -1.2304 16 8 2.4736 -1.8367 -1.1426 17 7 1.9913 -0.0942 -2.4283 18 6 1.5692 1.3058 -2.5178 19 6 2.3690 -0.8243 -3.6409 20 6 1.1508 -1.4919 -4.2252 21 1 0.1911 -1.3828 -3.7419 22 6 1.2611 -2.2411 -5.3775 23 7 0.1979 -2.8232 -5.8876 24 14 2.9207 -2.4292 -6.2139 25 1 3.6180 -3.6213 -5.6681 26 1 2.7219 -2.5980 -7.6758 27 1 3.7417 -1.2175 -5.9628 28 1 -0.3634 0.6061 0.8299 29 1 -0.3633 -1.0217 0.1098 30 1 -0.3633 0.4157 -0.9398 31 1 2.7899 -2.5408 2.6889 32 1 3.6164 -3.5784 4.7579 33 1 2.7267 1.2775 4.6448 34 1 2.4231 1.9557 -2.3267 35 1 1.1777 1.5041 -3.5155 36 1 0.7927 1.4990 -1.7777 37 1 2.7863 -0.1286 -4.3689 38 1 3.1138 -1.5806 -3.3927 39 1 0.2756 -3.3506 -6.6980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728926603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:09 Heat of formation + Delta-G solvation = -170.180323 kcal Electronic energy + Delta-G solvation = -27070.808695 eV Core-core repulsion = 22615.532117 eV Total energy + Delta-G solvation = -4455.276579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.96232 -49.02825 -41.01262 -39.47517 -38.65094 -36.58186 -35.08279 -32.87123 -32.06249 -31.57240 -30.93433 -28.45840 -26.27433 -25.43418 -24.13503 -23.62601 -22.37131 -21.12066 -19.08743 -18.81856 -18.26082 -17.61015 -17.04751 -16.93394 -16.82144 -16.75448 -16.19538 -15.88874 -15.42462 -15.38288 -14.95116 -14.80833 -14.60337 -14.29475 -13.86092 -13.62298 -13.24830 -13.09333 -13.01694 -12.58991 -12.45104 -12.36634 -12.29182 -11.98305 -11.87155 -11.56324 -11.54253 -11.03192 -10.91805 -10.83971 -10.57293 -10.21914 -9.70944 -9.62123 -9.32597 -9.12307 -8.65595 -7.86409 -6.15608 -4.15479 -0.09747 0.45209 1.97891 2.13380 2.99326 3.06418 3.19468 3.25034 3.30987 3.33049 3.64086 3.79938 4.02817 4.25798 4.33763 4.37703 4.50120 4.66130 4.88328 4.97440 5.09666 5.17857 5.18285 5.27485 5.41759 5.48784 5.57614 5.60438 5.67242 5.72556 5.98864 6.10801 6.14259 6.20008 6.58160 6.84089 7.15982 7.43344 7.51805 8.02566 8.37488 8.72074 8.86983 9.43900 10.97465 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.002507 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.095091 B =11167.361920 C =11818.465856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.074 3.926 3 H 0.106 0.894 4 O -0.319 6.319 5 C 0.511 3.489 6 O -0.500 6.500 7 C -0.104 4.104 8 C -0.036 4.036 9 C -0.137 4.137 10 C 0.102 3.898 11 F -0.122 7.122 12 C 0.055 3.945 13 F -0.123 7.123 14 C -0.062 4.062 15 C 0.513 3.487 16 O -0.520 6.520 17 N -0.591 5.591 18 C 0.072 3.928 19 C 0.216 3.784 20 C -0.533 4.533 21 H 0.076 0.924 22 C 0.074 3.926 23 N -0.895 5.895 24 Si 0.876 3.124 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.266 1.266 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 6.740 20.960 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.015 3.985 3 H 0.124 0.876 4 O -0.234 6.234 5 C 0.355 3.645 6 O -0.389 6.389 7 C -0.106 4.106 8 C -0.054 4.054 9 C -0.155 4.155 10 C 0.082 3.918 11 F -0.100 7.100 12 C 0.035 3.965 13 F -0.102 7.102 14 C -0.081 4.081 15 C 0.298 3.702 16 O -0.395 6.395 17 N -0.324 5.324 18 C -0.071 4.071 19 C 0.096 3.904 20 C -0.572 4.572 21 H 0.094 0.906 22 C -0.129 4.129 23 N -0.533 5.533 24 Si 0.703 3.297 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.190 1.190 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.182 0.818 32 H 0.176 0.824 33 H 0.180 0.820 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.945 6.376 20.862 22.368 hybrid contribution 0.747 0.055 -0.189 0.773 sum 5.692 6.431 20.672 22.385 Atomic orbital electron populations 1.22188 0.91599 1.04491 1.04089 1.22712 0.96374 0.97327 0.82048 0.87631 1.86646 1.76452 1.40875 1.19420 1.20855 0.74639 0.85050 0.83988 1.90842 1.48114 1.15677 1.84314 1.18916 1.05854 0.94131 0.91668 1.21627 0.91852 0.93467 0.98476 1.21160 1.01815 1.01701 0.90873 1.18047 0.99806 0.89842 0.84104 1.91572 1.86135 1.84333 1.47942 1.17344 1.06418 0.87737 0.84987 1.91567 1.92863 1.75572 1.50150 1.21124 0.95618 1.02107 0.89266 1.19729 0.80005 0.86740 0.83753 1.90692 1.45182 1.18289 1.85367 1.47739 1.65520 1.12056 1.07088 1.21879 0.99179 0.82065 1.04017 1.19755 0.97323 0.92411 0.80940 1.21306 0.95009 1.31265 1.09605 0.90631 1.24849 0.96591 0.94743 0.96724 1.69888 1.28841 1.32922 1.21678 0.86851 0.84546 0.79423 0.78884 1.19819 1.21008 1.19024 0.91070 0.90358 0.89179 0.81838 0.82405 0.82032 0.93210 0.89807 0.91866 0.94803 0.94238 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.19 37.16 0.34 -1.87 16 2 C 0.07 1.12 2.14 -27.88 -0.06 1.06 16 3 H 0.11 1.44 6.31 -51.93 -0.33 1.11 16 4 O -0.32 -4.70 8.71 -47.09 -0.41 -5.11 16 5 C 0.51 6.52 7.87 34.55 0.27 6.80 16 6 O -0.50 -7.02 15.60 -19.25 -0.30 -7.32 16 7 C -0.10 -1.05 5.87 -104.99 -0.62 -1.67 16 8 C -0.04 -0.31 9.61 -39.18 -0.38 -0.69 16 9 C -0.14 -1.00 10.01 -39.59 -0.40 -1.40 16 10 C 0.10 0.88 7.31 -39.21 -0.29 0.60 16 11 F -0.12 -1.14 17.18 2.25 0.04 -1.10 16 12 C 0.06 0.51 7.30 -39.43 -0.29 0.22 16 13 F -0.12 -1.22 17.17 2.25 0.04 -1.19 16 14 C -0.06 -0.56 9.57 -39.11 -0.37 -0.94 16 15 C 0.51 10.14 6.95 -10.98 -0.08 10.07 16 16 O -0.52 -12.36 16.13 -13.54 -0.22 -12.58 16 17 N -0.59 -11.61 2.86 -182.95 -0.52 -12.14 16 18 C 0.07 1.04 9.79 59.84 0.59 1.62 16 19 C 0.22 5.07 4.25 -5.19 -0.02 5.05 16 20 C -0.53 -14.73 9.94 -34.44 -0.34 -15.07 16 21 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 22 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 23 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 24 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 27 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.16 6.33 -51.93 -0.33 0.84 16 31 H 0.16 1.39 7.61 -52.48 -0.40 0.99 16 32 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.16 1.34 7.65 -52.49 -0.40 0.94 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 36 H 0.06 0.76 4.92 -51.93 -0.26 0.51 16 37 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 38 H 0.04 0.99 6.78 -51.92 -0.35 0.64 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 348.71 15.07 5.25 5.25 Total: -1.00 -33.60 348.71 -5.88 -39.48 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.13 Total: -1.26 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.74 Total: 5.77 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.25 Total: -38.21 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.93 Total: -25.01 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.08 Total: -2.29 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.60 -5.88 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728926603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.700 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds