Wall clock time and date at job start Tue Mar 31 2020 15:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47421 * 2 1 4 4 O 1.45204 * 109.46952 * 119.99918 * 2 1 3 5 5 C 1.34726 * 117.00061 * 269.99845 * 4 2 1 6 6 O 1.21483 * 119.99798 * 0.02562 * 5 4 2 7 7 C 1.47605 * 120.00103 * 179.97438 * 5 4 2 8 8 C 1.39698 * 120.11327 * 359.72954 * 7 5 4 9 9 C 1.37842 * 119.92141 * 179.73918 * 8 7 5 10 10 C 1.38616 * 120.14730 * 0.53606 * 9 8 7 11 11 F 1.35107 * 119.88474 * 179.72005 * 10 9 8 12 12 C 1.38855 * 120.23462 * 359.73642 * 10 9 8 13 13 F 1.35094 * 119.96350 * 179.97438 * 12 10 9 14 14 C 1.38038 * 120.07313 * 359.97438 * 12 10 9 15 15 C 1.50701 * 109.47244 * 239.99600 * 2 1 3 16 16 O 1.21281 * 120.00127 * 256.02472 * 15 2 1 17 17 N 1.34778 * 119.99638 * 76.03248 * 15 2 1 18 18 C 1.46494 * 120.00128 * 5.36492 * 17 15 2 19 19 C 1.46499 * 119.99700 * 185.36122 * 17 15 2 20 20 C 1.50702 * 109.46860 * 89.99917 * 19 17 15 21 21 H 1.07999 * 120.00293 * 0.02562 * 20 19 17 22 22 C 1.37886 * 120.00009 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99899 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99761 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47675 * 89.99696 * 24 22 20 26 26 H 1.48501 * 109.46849 * 209.99988 * 24 22 20 27 27 H 1.48503 * 109.47182 * 329.99508 * 24 22 20 28 28 H 1.09003 * 109.47393 * 306.14069 * 1 2 3 29 29 H 1.08997 * 109.47092 * 186.13632 * 1 2 3 30 30 H 1.09000 * 109.46733 * 66.13837 * 1 2 3 31 31 H 1.08004 * 120.04162 * 359.97438 * 8 7 5 32 32 H 1.07991 * 119.92489 * 180.25326 * 9 8 7 33 33 H 1.07996 * 120.07357 * 180.02562 * 14 12 10 34 34 H 1.08998 * 109.47479 * 84.82343 * 18 17 15 35 35 H 1.09002 * 109.47016 * 204.82429 * 18 17 15 36 36 H 1.09000 * 109.46810 * 324.81906 * 18 17 15 37 37 H 1.09003 * 109.47348 * 209.99678 * 19 17 15 38 38 H 1.09008 * 109.47508 * 330.00271 * 19 17 15 39 39 H 0.96998 * 119.99785 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2179 0.0668 2.2852 6 8 1.9969 1.2610 2.2545 7 6 2.7086 -0.5613 3.5276 8 6 2.9571 -1.9354 3.5675 9 6 3.4204 -2.5169 4.7282 10 6 3.6298 -1.7431 5.8590 11 9 4.0787 -2.3195 6.9955 12 6 3.3795 -0.3776 5.8281 13 9 3.5850 0.3712 6.9335 14 6 2.9210 0.2155 4.6690 15 6 2.0323 -0.7105 -1.2304 16 8 2.4736 -1.8367 -1.1426 17 7 1.9913 -0.0942 -2.4283 18 6 1.5692 1.3058 -2.5178 19 6 2.3690 -0.8243 -3.6409 20 6 1.1508 -1.4919 -4.2252 21 1 0.1911 -1.3828 -3.7419 22 6 1.2611 -2.2411 -5.3775 23 7 0.1979 -2.8232 -5.8876 24 14 2.9207 -2.4292 -6.2139 25 1 3.6180 -3.6213 -5.6681 26 1 2.7219 -2.5980 -7.6758 27 1 3.7417 -1.2175 -5.9628 28 1 -0.3634 0.6061 0.8299 29 1 -0.3633 -1.0217 0.1098 30 1 -0.3633 0.4157 -0.9398 31 1 2.7899 -2.5408 2.6889 32 1 3.6164 -3.5784 4.7579 33 1 2.7267 1.2775 4.6448 34 1 2.4231 1.9557 -2.3267 35 1 1.1777 1.5041 -3.5155 36 1 0.7927 1.4990 -1.7777 37 1 2.7863 -0.1286 -4.3689 38 1 3.1138 -1.5806 -3.3927 39 1 0.2756 -3.3506 -6.6980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728926603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:08 Heat of formation + Delta-G solvation = -189.822402 kcal Electronic energy + Delta-G solvation = -27071.660440 eV Core-core repulsion = 22615.532117 eV Total energy + Delta-G solvation = -4456.128323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.68752 -49.75908 -42.07921 -40.76027 -39.61224 -37.70175 -36.71498 -34.80564 -33.35357 -32.30636 -31.79217 -30.24498 -27.61605 -26.44323 -25.49195 -24.32445 -23.86736 -22.19875 -20.42007 -19.83039 -19.13420 -19.04877 -18.47664 -17.97497 -17.91130 -17.57998 -17.26671 -17.09316 -16.77863 -16.32182 -16.15575 -15.99942 -15.66178 -15.23734 -15.06806 -14.76070 -14.55053 -14.35099 -14.06224 -13.84165 -13.73395 -13.67900 -13.45093 -13.29454 -13.17360 -12.86616 -12.64581 -12.52098 -12.44252 -12.03025 -11.99930 -11.90187 -11.72969 -10.81954 -10.68832 -10.37892 -10.05666 -9.49161 -8.32719 -6.38153 -0.85778 -0.21912 1.04336 1.12062 1.35811 1.39191 1.47180 1.54449 2.22044 2.27762 2.32546 2.52787 3.01794 3.08671 3.28121 3.35510 3.37652 3.69446 3.74827 3.80005 3.81096 4.26767 4.31914 4.49285 4.54942 4.57919 4.62960 4.67084 4.77748 4.81643 4.87755 4.91545 4.93048 5.08891 5.15048 5.42958 5.44288 5.52477 6.22149 6.39056 6.54055 6.63790 7.14229 7.29001 8.83720 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.002507 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.095091 B =11167.361920 C =11818.465856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.083 3.917 3 H 0.128 0.872 4 O -0.332 6.332 5 C 0.514 3.486 6 O -0.514 6.514 7 C -0.116 4.116 8 C -0.032 4.032 9 C -0.122 4.122 10 C 0.103 3.897 11 F -0.125 7.125 12 C 0.049 3.951 13 F -0.129 7.129 14 C -0.055 4.055 15 C 0.504 3.496 16 O -0.571 6.571 17 N -0.597 5.597 18 C 0.064 3.936 19 C 0.222 3.778 20 C -0.537 4.537 21 H 0.035 0.965 22 C 0.013 3.987 23 N -0.943 5.943 24 Si 0.944 3.056 25 H -0.276 1.276 26 H -0.277 1.277 27 H -0.237 1.237 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.164 0.836 32 H 0.185 0.815 33 H 0.168 0.832 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.023 0.977 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 7.932 21.810 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 H 0.145 0.855 4 O -0.247 6.247 5 C 0.359 3.641 6 O -0.404 6.404 7 C -0.117 4.117 8 C -0.051 4.051 9 C -0.141 4.141 10 C 0.083 3.917 11 F -0.103 7.103 12 C 0.029 3.971 13 F -0.108 7.108 14 C -0.074 4.074 15 C 0.291 3.709 16 O -0.450 6.450 17 N -0.329 5.329 18 C -0.078 4.078 19 C 0.100 3.900 20 C -0.576 4.576 21 H 0.053 0.947 22 C -0.185 4.185 23 N -0.583 5.583 24 Si 0.767 3.233 25 H -0.202 1.202 26 H -0.202 1.202 27 H -0.160 1.160 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.182 0.818 32 H 0.203 0.797 33 H 0.186 0.814 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.277 7.631 21.734 23.875 hybrid contribution 0.263 -0.323 -0.360 0.551 sum 6.540 7.307 21.374 23.516 Atomic orbital electron populations 1.22184 0.90185 1.04202 1.05301 1.22577 0.97160 0.97310 0.80454 0.85454 1.86651 1.76808 1.41525 1.19759 1.21200 0.74056 0.84879 0.83954 1.90827 1.48922 1.16159 1.84476 1.18822 1.07254 0.94806 0.90836 1.21670 0.91525 0.92891 0.98972 1.21358 1.00280 1.02811 0.89619 1.18177 0.99515 0.89741 0.84289 1.91568 1.86166 1.84347 1.48237 1.17394 1.06866 0.87975 0.84832 1.91553 1.92974 1.75801 1.50428 1.21099 0.95162 1.02330 0.88817 1.20549 0.78938 0.86358 0.85046 1.90654 1.47422 1.20610 1.86347 1.47816 1.65234 1.13840 1.06051 1.22207 1.01322 0.79421 1.04811 1.19454 0.94980 0.92726 0.82817 1.21536 0.94993 1.31557 1.09474 0.94682 1.25803 1.00751 0.94328 0.97611 1.70036 1.31506 1.34232 1.22550 0.85763 0.79577 0.80226 0.77698 1.20191 1.20238 1.16010 0.88534 0.91780 0.88880 0.81806 0.79735 0.81442 0.89971 0.90128 0.89431 0.92581 0.95929 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 9.19 71.98 0.66 -3.42 16 2 C 0.08 2.42 2.14 29.85 0.06 2.48 16 3 H 0.13 3.14 6.31 -2.39 -0.02 3.13 16 4 O -0.33 -9.49 8.71 -50.13 -0.44 -9.93 16 5 C 0.51 12.44 7.87 70.29 0.55 12.99 16 6 O -0.51 -13.49 15.60 19.89 0.31 -13.18 16 7 C -0.12 -2.19 5.87 -20.10 -0.12 -2.30 16 8 C -0.03 -0.51 9.61 22.53 0.22 -0.29 16 9 C -0.12 -1.52 10.01 22.27 0.22 -1.30 16 10 C 0.10 1.59 7.31 22.51 0.16 1.76 16 11 F -0.12 -2.12 17.18 44.97 0.77 -1.35 16 12 C 0.05 0.83 7.30 22.37 0.16 1.00 16 13 F -0.13 -2.42 17.17 44.97 0.77 -1.65 16 14 C -0.06 -0.92 9.57 22.57 0.22 -0.71 16 15 C 0.50 19.83 6.95 87.66 0.61 20.44 16 16 O -0.57 -27.72 16.13 15.23 0.25 -27.47 16 17 N -0.60 -22.99 2.86 -851.13 -2.43 -25.42 16 18 C 0.06 1.69 9.79 127.77 1.25 2.94 16 19 C 0.22 10.32 4.25 85.63 0.36 10.69 16 20 C -0.54 -30.26 9.94 25.60 0.25 -30.00 16 21 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 22 C 0.01 0.77 5.47 84.66 0.46 1.23 16 23 N -0.94 -58.02 13.96 21.45 0.30 -57.73 16 24 Si 0.94 42.95 27.47 68.60 1.88 44.84 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 27 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 2.28 6.33 -2.39 -0.02 2.26 16 31 H 0.16 2.62 7.61 -2.91 -0.02 2.60 16 32 H 0.19 1.28 8.06 -2.92 -0.02 1.26 16 33 H 0.17 2.56 7.65 -2.91 -0.02 2.53 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 2.20 8.03 -2.39 -0.02 2.18 16 36 H 0.09 1.88 4.92 -2.39 -0.01 1.87 16 37 H 0.06 2.36 7.13 -2.39 -0.02 2.35 16 38 H 0.02 1.13 6.78 -2.38 -0.02 1.12 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -74.88 348.71 7.55 -67.32 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.05 Total: 9.06 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.09 Total: 15.51 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -2.13 Total: -83.15 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: 0.12 Total: -50.58 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 1.54 Total: -3.00 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.88 Total: 44.84 kcal Total: -74.88 7.55 -67.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728926603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.498 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds