Wall clock time and date at job start Tue Mar 31 2020 15:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46602 * 2 1 4 4 O 1.45204 * 109.46975 * 240.00122 * 2 1 3 5 5 C 1.34727 * 116.99779 * 89.99937 * 4 2 1 6 6 O 1.21484 * 120.00675 * 359.97438 * 5 4 2 7 7 C 1.47607 * 119.99405 * 179.97438 * 5 4 2 8 8 C 1.39703 * 120.11295 * 359.72138 * 7 5 4 9 9 C 1.37833 * 119.91732 * 179.76366 * 8 7 5 10 10 C 1.38620 * 120.15320 * 0.49396 * 9 8 7 11 11 F 1.35103 * 119.88700 * 179.74190 * 10 9 8 12 12 C 1.38853 * 120.23243 * 359.76035 * 10 9 8 13 13 F 1.35099 * 119.96486 * 179.97438 * 12 10 9 14 14 C 1.38041 * 120.07234 * 0.02562 * 12 10 9 15 15 C 1.50693 * 109.47433 * 119.99456 * 2 1 3 16 16 O 1.21283 * 119.99993 * 106.83559 * 15 2 1 17 17 N 1.34777 * 120.00459 * 286.83956 * 15 2 1 18 18 C 1.46500 * 119.99806 * 4.66120 * 17 15 2 19 19 C 1.46495 * 119.99998 * 184.38220 * 17 15 2 20 20 C 1.50704 * 109.47321 * 270.27431 * 19 17 15 21 21 H 1.07999 * 120.00020 * 0.02562 * 20 19 17 22 22 C 1.37876 * 119.99771 * 179.97438 * 20 19 17 23 23 N 1.31510 * 120.00636 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99627 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47382 * 90.00361 * 24 22 20 26 26 H 1.48503 * 109.46981 * 210.00117 * 24 22 20 27 27 H 1.48502 * 109.47234 * 329.99748 * 24 22 20 28 28 H 1.08997 * 109.47212 * 49.82179 * 1 2 3 29 29 H 1.08995 * 109.46845 * 169.82650 * 1 2 3 30 30 H 1.08998 * 109.47165 * 289.82188 * 1 2 3 31 31 H 1.07997 * 120.04352 * 359.97438 * 8 7 5 32 32 H 1.08002 * 119.92364 * 180.23531 * 9 8 7 33 33 H 1.08003 * 120.07355 * 179.97438 * 14 12 10 34 34 H 1.08995 * 109.47190 * 266.44608 * 18 17 15 35 35 H 1.09003 * 109.47306 * 26.44211 * 18 17 15 36 36 H 1.09001 * 109.47589 * 146.44208 * 18 17 15 37 37 H 1.08990 * 109.47257 * 30.27698 * 19 17 15 38 38 H 1.09005 * 109.47230 * 150.27868 * 19 17 15 39 39 H 0.96992 * 120.00645 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2179 0.0669 -2.2852 6 8 1.9969 1.2610 -2.2546 7 6 2.7097 -0.5611 -3.5272 8 6 2.9701 -1.9332 -3.5634 9 6 3.4246 -2.5162 -4.7267 10 6 3.6337 -1.7425 -5.8577 11 9 4.0843 -2.3187 -6.9936 12 6 3.3820 -0.3774 -5.8273 13 9 3.5881 0.3716 -6.9326 14 6 2.9223 0.2156 -4.6686 15 6 2.0324 -0.7102 1.2304 16 8 2.5214 -1.8160 1.1352 17 7 1.9383 -0.1168 2.4369 18 6 1.2564 1.1733 2.5673 19 6 2.5127 -0.7646 3.6186 20 6 1.4795 -1.6600 4.2526 21 1 0.4938 -1.7390 3.8184 22 6 1.7931 -2.3792 5.3864 23 7 2.9935 -2.2835 5.9149 24 14 0.5127 -3.4897 6.1718 25 1 0.6091 -4.8497 5.5835 26 1 0.7537 -3.5652 7.6352 27 1 -0.8426 -2.9369 5.9213 28 1 -0.3633 0.6630 -0.7852 29 1 -0.3633 -1.0115 -0.1815 30 1 -0.3633 0.3485 0.9668 31 1 2.8123 -2.5369 -2.6819 32 1 3.6224 -3.5775 -4.7558 33 1 2.7269 1.2776 -4.6448 34 1 1.9862 1.9793 2.4923 35 1 0.5184 1.2762 1.7718 36 1 0.7571 1.2241 3.5349 37 1 3.3768 -1.3594 3.3230 38 1 2.8230 -0.0040 4.3351 39 1 3.2142 -2.7897 6.7123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728926604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:11 Heat of formation + Delta-G solvation = -169.932937 kcal Electronic energy + Delta-G solvation = -27036.799993 eV Core-core repulsion = 22581.534142 eV Total energy + Delta-G solvation = -4455.265851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.94390 -49.00971 -40.98101 -39.41264 -38.58904 -36.53542 -34.97000 -32.96682 -32.00479 -31.54618 -30.90120 -27.76861 -26.28294 -25.35044 -24.11188 -23.60526 -22.61270 -21.16389 -19.08856 -18.82302 -18.23989 -17.58541 -16.89748 -16.80133 -16.69241 -16.58417 -16.15286 -15.80515 -15.40651 -15.31711 -14.93177 -14.66017 -14.58386 -14.44445 -13.82213 -13.69601 -13.22521 -13.05236 -12.98449 -12.61461 -12.51818 -12.19151 -12.12432 -11.85292 -11.70078 -11.42419 -11.25760 -10.94292 -10.87373 -10.81049 -10.61338 -10.20472 -9.69724 -9.68858 -9.30479 -8.98720 -8.48600 -7.78411 -6.09545 -4.14599 -0.07528 0.47324 2.00301 2.17539 3.01927 3.16663 3.21778 3.28334 3.34633 3.36859 3.73454 3.82184 4.04916 4.28667 4.39783 4.40056 4.52300 4.72449 4.89510 5.02072 5.10961 5.20260 5.25170 5.28764 5.38181 5.50990 5.56553 5.60799 5.68151 5.83284 6.00523 6.12933 6.19228 6.21446 6.92409 7.32799 7.39136 7.48124 7.85909 8.15393 8.22862 8.78383 8.93406 9.50507 10.98702 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.022216 B = 0.002474 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.066426 B =11313.865033 C =12028.468193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.072 3.928 3 H 0.106 0.894 4 O -0.318 6.318 5 C 0.511 3.489 6 O -0.501 6.501 7 C -0.104 4.104 8 C -0.036 4.036 9 C -0.137 4.137 10 C 0.102 3.898 11 F -0.122 7.122 12 C 0.055 3.945 13 F -0.123 7.123 14 C -0.062 4.062 15 C 0.508 3.492 16 O -0.517 6.517 17 N -0.595 5.595 18 C 0.065 3.935 19 C 0.247 3.753 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 5.489 -20.865 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 H 0.124 0.876 4 O -0.233 6.233 5 C 0.355 3.645 6 O -0.390 6.390 7 C -0.106 4.106 8 C -0.054 4.054 9 C -0.156 4.156 10 C 0.082 3.918 11 F -0.100 7.100 12 C 0.035 3.965 13 F -0.102 7.102 14 C -0.081 4.081 15 C 0.292 3.708 16 O -0.393 6.393 17 N -0.329 5.329 18 C -0.078 4.078 19 C 0.128 3.872 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.727 3.273 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.199 1.199 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.182 0.818 32 H 0.176 0.824 33 H 0.180 0.820 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.626 5.190 -20.767 21.467 hybrid contribution -0.582 -0.373 0.152 0.708 sum -2.208 4.817 -20.615 21.285 Atomic orbital electron populations 1.22344 0.92095 1.04264 1.04303 1.22733 0.96061 0.97500 0.82324 0.87607 1.86649 1.76443 1.40810 1.19379 1.20857 0.74645 0.85049 0.83990 1.90840 1.48166 1.15673 1.84323 1.18921 1.05785 0.94166 0.91681 1.21628 0.91830 0.93473 0.98467 1.21160 1.01886 1.01689 0.90819 1.18044 0.99798 0.89844 0.84127 1.91569 1.86071 1.84347 1.48007 1.17344 1.06426 0.87742 0.84994 1.91567 1.92864 1.75573 1.50163 1.21124 0.95626 1.02076 0.89297 1.19728 0.80834 0.86513 0.83767 1.90708 1.44345 1.18636 1.85587 1.48081 1.55678 1.20851 1.08251 1.22011 0.96947 0.85352 1.03539 1.19358 0.94725 0.92934 0.80144 1.21400 0.98763 1.26163 1.10282 0.92347 1.24935 0.95599 0.96689 0.96857 1.69921 1.19504 1.41890 1.22028 0.86484 0.81485 0.81116 0.78243 1.20501 1.21135 1.19910 0.91064 0.90477 0.88832 0.81829 0.82409 0.82043 0.93271 0.91431 0.90264 0.93791 0.94556 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.09 37.16 0.34 -1.84 16 2 C 0.07 1.11 2.17 -27.88 -0.06 1.05 16 3 H 0.11 1.49 6.75 -51.92 -0.35 1.14 16 4 O -0.32 -4.77 8.70 -47.14 -0.41 -5.18 16 5 C 0.51 6.67 7.87 34.55 0.27 6.94 16 6 O -0.50 -7.17 15.60 -19.25 -0.30 -7.47 16 7 C -0.10 -1.08 5.87 -104.99 -0.62 -1.70 16 8 C -0.04 -0.32 9.61 -39.18 -0.38 -0.69 16 9 C -0.14 -1.03 10.01 -39.59 -0.40 -1.43 16 10 C 0.10 0.90 7.31 -39.21 -0.29 0.62 16 11 F -0.12 -1.16 17.17 2.25 0.04 -1.12 16 12 C 0.06 0.52 7.30 -39.43 -0.29 0.23 16 13 F -0.12 -1.25 17.17 2.25 0.04 -1.21 16 14 C -0.06 -0.58 9.57 -39.11 -0.37 -0.95 16 15 C 0.51 10.28 7.00 -10.99 -0.08 10.20 16 16 O -0.52 -12.73 16.18 -13.73 -0.22 -12.95 16 17 N -0.60 -12.12 2.86 -182.96 -0.52 -12.64 16 18 C 0.07 0.97 9.85 59.85 0.59 1.56 16 19 C 0.25 6.26 5.14 -5.19 -0.03 6.23 16 20 C -0.53 -14.51 9.38 -34.44 -0.32 -14.83 16 21 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 24 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.12 5.49 -51.93 -0.28 0.83 16 31 H 0.16 1.44 7.61 -52.49 -0.40 1.04 16 32 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.16 1.38 7.65 -52.48 -0.40 0.98 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.81 4.14 -51.93 -0.21 0.60 16 36 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.04 1.26 7.49 -51.93 -0.39 0.87 16 38 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -33.12 351.36 -6.21 -39.33 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.12 Total: -2.08 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -1.72 Total: 6.99 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.21 Total: -37.95 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.93 Total: -25.60 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.08 Total: -2.33 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.12 -6.21 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728926604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.605 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds