Wall clock time and date at job start Tue Mar 31 2020 15:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46602 * 2 1 4 4 O 1.45204 * 109.46975 * 240.00122 * 2 1 3 5 5 C 1.34727 * 116.99779 * 89.99937 * 4 2 1 6 6 O 1.21484 * 120.00675 * 359.97438 * 5 4 2 7 7 C 1.47607 * 119.99405 * 179.97438 * 5 4 2 8 8 C 1.39703 * 120.11295 * 359.72138 * 7 5 4 9 9 C 1.37833 * 119.91732 * 179.76366 * 8 7 5 10 10 C 1.38620 * 120.15320 * 0.49396 * 9 8 7 11 11 F 1.35103 * 119.88700 * 179.74190 * 10 9 8 12 12 C 1.38853 * 120.23243 * 359.76035 * 10 9 8 13 13 F 1.35099 * 119.96486 * 179.97438 * 12 10 9 14 14 C 1.38041 * 120.07234 * 0.02562 * 12 10 9 15 15 C 1.50693 * 109.47433 * 119.99456 * 2 1 3 16 16 O 1.21283 * 119.99993 * 106.83559 * 15 2 1 17 17 N 1.34777 * 120.00459 * 286.83956 * 15 2 1 18 18 C 1.46500 * 119.99806 * 4.66120 * 17 15 2 19 19 C 1.46495 * 119.99998 * 184.38220 * 17 15 2 20 20 C 1.50704 * 109.47321 * 270.27431 * 19 17 15 21 21 H 1.07999 * 120.00020 * 0.02562 * 20 19 17 22 22 C 1.37876 * 119.99771 * 179.97438 * 20 19 17 23 23 N 1.31510 * 120.00636 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99627 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47382 * 90.00361 * 24 22 20 26 26 H 1.48503 * 109.46981 * 210.00117 * 24 22 20 27 27 H 1.48502 * 109.47234 * 329.99748 * 24 22 20 28 28 H 1.08997 * 109.47212 * 49.82179 * 1 2 3 29 29 H 1.08995 * 109.46845 * 169.82650 * 1 2 3 30 30 H 1.08998 * 109.47165 * 289.82188 * 1 2 3 31 31 H 1.07997 * 120.04352 * 359.97438 * 8 7 5 32 32 H 1.08002 * 119.92364 * 180.23531 * 9 8 7 33 33 H 1.08003 * 120.07355 * 179.97438 * 14 12 10 34 34 H 1.08995 * 109.47190 * 266.44608 * 18 17 15 35 35 H 1.09003 * 109.47306 * 26.44211 * 18 17 15 36 36 H 1.09001 * 109.47589 * 146.44208 * 18 17 15 37 37 H 1.08990 * 109.47257 * 30.27698 * 19 17 15 38 38 H 1.09005 * 109.47230 * 150.27868 * 19 17 15 39 39 H 0.96992 * 120.00645 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2179 0.0669 -2.2852 6 8 1.9969 1.2610 -2.2546 7 6 2.7097 -0.5611 -3.5272 8 6 2.9701 -1.9332 -3.5634 9 6 3.4246 -2.5162 -4.7267 10 6 3.6337 -1.7425 -5.8577 11 9 4.0843 -2.3187 -6.9936 12 6 3.3820 -0.3774 -5.8273 13 9 3.5881 0.3716 -6.9326 14 6 2.9223 0.2156 -4.6686 15 6 2.0324 -0.7102 1.2304 16 8 2.5214 -1.8160 1.1352 17 7 1.9383 -0.1168 2.4369 18 6 1.2564 1.1733 2.5673 19 6 2.5127 -0.7646 3.6186 20 6 1.4795 -1.6600 4.2526 21 1 0.4938 -1.7390 3.8184 22 6 1.7931 -2.3792 5.3864 23 7 2.9935 -2.2835 5.9149 24 14 0.5127 -3.4897 6.1718 25 1 0.6091 -4.8497 5.5835 26 1 0.7537 -3.5652 7.6352 27 1 -0.8426 -2.9369 5.9213 28 1 -0.3633 0.6630 -0.7852 29 1 -0.3633 -1.0115 -0.1815 30 1 -0.3633 0.3485 0.9668 31 1 2.8123 -2.5369 -2.6819 32 1 3.6224 -3.5775 -4.7558 33 1 2.7269 1.2776 -4.6448 34 1 1.9862 1.9793 2.4923 35 1 0.5184 1.2762 1.7718 36 1 0.7571 1.2241 3.5349 37 1 3.3768 -1.3594 3.3230 38 1 2.8230 -0.0040 4.3351 39 1 3.2142 -2.7897 6.7123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728926604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:11 Heat of formation + Delta-G solvation = -188.495197 kcal Electronic energy + Delta-G solvation = -27037.604913 eV Core-core repulsion = 22581.534142 eV Total energy + Delta-G solvation = -4456.070771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.68784 -49.75914 -42.06839 -40.72516 -39.60053 -37.68392 -36.67514 -34.88141 -33.27799 -32.30168 -31.77399 -29.60979 -27.67842 -26.37800 -25.61826 -24.33076 -24.07633 -22.22189 -20.48669 -19.82455 -19.05219 -18.68013 -18.45996 -17.94442 -17.86240 -17.57763 -17.24912 -17.08446 -16.79620 -16.17903 -16.16395 -16.13814 -15.66237 -15.23564 -15.00503 -14.84021 -14.46628 -14.26009 -14.00550 -13.83317 -13.70478 -13.61102 -13.34971 -13.27112 -13.02110 -12.85284 -12.62993 -12.53513 -12.34499 -12.17060 -11.97569 -11.89696 -11.68053 -10.63803 -10.60654 -10.37931 -10.05654 -9.50610 -8.21700 -6.35934 -0.85717 -0.21952 1.04966 1.13713 1.39221 1.41997 1.51224 1.62277 2.22912 2.28173 2.42317 2.53349 3.08585 3.08761 3.28694 3.37231 3.39377 3.69844 3.75673 3.80071 3.84831 4.22277 4.32992 4.49143 4.57650 4.62455 4.67331 4.67941 4.81525 4.89092 4.91666 4.95280 5.14064 5.16825 5.21588 5.42949 5.52998 5.78819 6.04777 6.40293 6.61745 6.73039 7.21504 7.37562 8.85800 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.022216 B = 0.002474 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.066426 B =11313.865033 C =12028.468193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.082 3.918 3 H 0.123 0.877 4 O -0.332 6.332 5 C 0.513 3.487 6 O -0.515 6.515 7 C -0.116 4.116 8 C -0.032 4.032 9 C -0.122 4.122 10 C 0.103 3.897 11 F -0.125 7.125 12 C 0.050 3.950 13 F -0.129 7.129 14 C -0.055 4.055 15 C 0.500 3.500 16 O -0.573 6.573 17 N -0.600 5.600 18 C 0.059 3.941 19 C 0.260 3.740 20 C -0.540 4.540 21 H 0.057 0.943 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.967 3.033 25 H -0.281 1.281 26 H -0.277 1.277 27 H -0.260 1.260 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.164 0.836 32 H 0.185 0.815 33 H 0.168 0.832 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.000 1.000 38 H 0.030 0.970 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 5.853 -21.863 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.024 3.976 3 H 0.141 0.859 4 O -0.247 6.247 5 C 0.359 3.641 6 O -0.405 6.405 7 C -0.117 4.117 8 C -0.051 4.051 9 C -0.141 4.141 10 C 0.083 3.917 11 F -0.103 7.103 12 C 0.029 3.971 13 F -0.107 7.107 14 C -0.074 4.074 15 C 0.286 3.714 16 O -0.452 6.452 17 N -0.333 5.333 18 C -0.083 4.083 19 C 0.139 3.861 20 C -0.579 4.579 21 H 0.075 0.925 22 C -0.191 4.191 23 N -0.569 5.569 24 Si 0.791 3.209 25 H -0.207 1.207 26 H -0.202 1.202 27 H -0.184 1.184 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.182 0.818 32 H 0.203 0.797 33 H 0.185 0.815 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.018 0.982 38 H 0.048 0.952 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.221 5.607 -21.783 22.723 hybrid contribution -0.027 -0.469 0.398 0.616 sum -3.248 5.138 -21.386 22.233 Atomic orbital electron populations 1.22354 0.89634 1.04698 1.05707 1.22593 0.97635 0.96984 0.80371 0.85923 1.86650 1.76868 1.41485 1.19732 1.21201 0.74071 0.84874 0.83964 1.90824 1.48989 1.16154 1.84499 1.18830 1.07204 0.94847 0.90857 1.21667 0.91538 0.92901 0.98965 1.21358 1.00340 1.02809 0.89559 1.18170 0.99487 0.89737 0.84311 1.91567 1.86094 1.84355 1.48280 1.17391 1.06848 0.87981 0.84836 1.91554 1.92970 1.75796 1.50423 1.21099 0.95183 1.02292 0.88852 1.20610 0.79661 0.86054 0.85035 1.90669 1.46729 1.21257 1.86572 1.48059 1.55666 1.22401 1.07145 1.22328 0.98017 0.83146 1.04788 1.18847 0.93253 0.92341 0.81692 1.21682 0.98983 1.26695 1.10546 0.92494 1.25846 0.97670 0.98132 0.97484 1.70039 1.21402 1.42886 1.22561 0.85424 0.79330 0.78655 0.77465 1.20672 1.20197 1.18431 0.88495 0.91065 0.87981 0.81845 0.79724 0.81456 0.90923 0.88039 0.90535 0.98208 0.95167 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 9.09 71.98 0.65 -3.14 16 2 C 0.08 2.41 2.17 29.85 0.06 2.48 16 3 H 0.12 3.19 6.75 -2.38 -0.02 3.17 16 4 O -0.33 -9.70 8.70 -50.09 -0.44 -10.14 16 5 C 0.51 12.80 7.87 70.30 0.55 13.36 16 6 O -0.51 -13.88 15.60 19.89 0.31 -13.57 16 7 C -0.12 -2.27 5.87 -20.10 -0.12 -2.39 16 8 C -0.03 -0.53 9.61 22.53 0.22 -0.31 16 9 C -0.12 -1.59 10.01 22.26 0.22 -1.37 16 10 C 0.10 1.65 7.31 22.51 0.16 1.81 16 11 F -0.12 -2.17 17.17 44.97 0.77 -1.40 16 12 C 0.05 0.86 7.30 22.37 0.16 1.02 16 13 F -0.13 -2.47 17.17 44.97 0.77 -1.70 16 14 C -0.06 -0.96 9.57 22.57 0.22 -0.74 16 15 C 0.50 20.39 7.00 87.65 0.61 21.01 16 16 O -0.57 -29.22 16.18 15.40 0.25 -28.97 16 17 N -0.60 -24.54 2.86 -851.15 -2.43 -26.97 16 18 C 0.06 1.64 9.85 127.77 1.26 2.90 16 19 C 0.26 13.60 5.14 85.64 0.44 14.04 16 20 C -0.54 -30.22 9.38 25.60 0.24 -29.98 16 21 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 22 C 0.01 0.43 5.46 84.65 0.46 0.90 16 23 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 24 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.10 2.13 5.49 -2.39 -0.01 2.11 16 31 H 0.16 2.74 7.61 -2.91 -0.02 2.72 16 32 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.17 2.65 7.65 -2.91 -0.02 2.63 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.10 2.14 4.14 -2.39 -0.01 2.13 16 36 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 37 H 0.00 -0.01 7.49 -2.39 -0.02 -0.03 16 38 H 0.03 1.60 8.07 -2.38 -0.02 1.58 16 39 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -73.64 351.36 7.81 -65.83 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.11 Total: 6.41 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 5.15 Total: 19.57 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -2.15 Total: -81.88 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: 0.12 Total: -52.68 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 1.54 Total: -3.10 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -73.64 7.81 -65.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728926604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.667 kcal (2) G-P(sol) polarization free energy of solvation -73.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds