Wall clock time and date at job start Tue Mar 31 2020 15:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47274 * 2 1 4 4 O 1.45203 * 109.47127 * 119.99449 * 2 1 3 5 5 C 1.34708 * 117.00294 * 269.99814 * 4 2 1 6 6 O 1.21471 * 120.00047 * 359.97438 * 5 4 2 7 7 C 1.47733 * 120.00422 * 180.02562 * 5 4 2 8 8 C 1.39602 * 120.12483 * 359.72293 * 7 5 4 9 9 C 1.38193 * 119.87228 * 179.77068 * 8 7 5 10 10 F 1.35099 * 119.93439 * 180.27581 * 9 8 7 11 11 C 1.38532 * 120.12555 * 0.50600 * 9 8 7 12 12 C 1.38537 * 120.25673 * 359.74520 * 11 9 8 13 13 F 1.35096 * 119.93802 * 179.97438 * 12 11 9 14 14 C 1.38190 * 120.12699 * 0.02562 * 12 11 9 15 15 C 1.50696 * 109.46835 * 239.99447 * 2 1 3 16 16 O 1.21280 * 120.00000 * 256.02118 * 15 2 1 17 17 N 1.34775 * 120.00229 * 76.03491 * 15 2 1 18 18 C 1.46505 * 119.99910 * 5.35637 * 17 15 2 19 19 C 1.46492 * 120.00249 * 185.36470 * 17 15 2 20 20 C 1.50706 * 109.47383 * 89.99465 * 19 17 15 21 21 H 1.07993 * 119.99804 * 0.02562 * 20 19 17 22 22 C 1.37875 * 120.00132 * 180.02562 * 20 19 17 23 23 N 1.31519 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00189 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47048 * 89.99817 * 24 22 20 26 26 H 1.48495 * 109.47289 * 209.99515 * 24 22 20 27 27 H 1.48496 * 109.47033 * 329.99860 * 24 22 20 28 28 H 1.08994 * 109.47116 * 186.14636 * 1 2 3 29 29 H 1.08996 * 109.47218 * 66.13882 * 1 2 3 30 30 H 1.09006 * 109.46975 * 306.14350 * 1 2 3 31 31 H 1.08005 * 120.05990 * 359.97438 * 8 7 5 32 32 H 1.08001 * 119.87167 * 179.76893 * 11 9 8 33 33 H 1.07995 * 120.06554 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.47126 * 84.82860 * 18 17 15 35 35 H 1.08997 * 109.47350 * 204.83266 * 18 17 15 36 36 H 1.09000 * 109.46993 * 324.82939 * 18 17 15 37 37 H 1.09007 * 109.47186 * 209.99560 * 19 17 15 38 38 H 1.09000 * 109.47111 * 329.99288 * 19 17 15 39 39 H 0.97005 * 119.99915 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2179 0.0668 2.2851 6 8 1.9979 1.2610 2.2541 7 6 2.7102 -0.5614 3.5282 8 6 2.9595 -1.9344 3.5682 9 6 3.4244 -2.5159 4.7325 10 9 3.6714 -3.8436 4.7709 11 6 3.6332 -1.7408 5.8615 12 6 3.3826 -0.3787 5.8292 13 9 3.5880 0.3710 6.9342 14 6 2.9220 0.2145 4.6693 15 6 2.0322 -0.7105 -1.2304 16 8 2.4735 -1.8368 -1.1426 17 7 1.9913 -0.0944 -2.4283 18 6 1.5690 1.3057 -2.5179 19 6 2.3687 -0.8245 -3.6409 20 6 1.1505 -1.4921 -4.2251 21 1 0.1909 -1.3830 -3.7418 22 6 1.2609 -2.2422 -5.3767 23 7 2.4294 -2.3746 -5.9657 24 14 -0.2490 -3.0702 -6.1005 25 1 -0.9070 -2.1480 -7.0606 26 1 0.1578 -4.3117 -6.8064 27 1 -1.1982 -3.4092 -5.0100 28 1 -0.3633 -1.0217 0.1100 29 1 -0.3633 0.4157 -0.9398 30 1 -0.3633 0.6062 0.8299 31 1 2.7924 -2.5404 2.6900 32 1 3.9931 -2.2001 6.7703 33 1 2.7273 1.2765 4.6451 34 1 2.4230 1.9556 -2.3269 35 1 1.1774 1.5040 -3.5156 36 1 0.7926 1.4990 -1.7778 37 1 2.7861 -0.1288 -4.3689 38 1 3.1135 -1.5807 -3.3927 39 1 2.5070 -2.9020 -6.7761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729238044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:14 Heat of formation + Delta-G solvation = -174.801191 kcal Electronic energy + Delta-G solvation = -27100.765635 eV Core-core repulsion = 22645.288680 eV Total energy + Delta-G solvation = -4455.476955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.48287 -49.39223 -40.99203 -39.37246 -38.56242 -36.55558 -34.95370 -32.93533 -32.21489 -31.32694 -30.84573 -27.84280 -26.17664 -25.64386 -24.25203 -23.33018 -22.57122 -21.18802 -19.15108 -18.86851 -17.83350 -17.16958 -16.90569 -16.71940 -16.59852 -16.49372 -16.12217 -15.99667 -15.76934 -15.73094 -15.17327 -14.74851 -14.68848 -14.35987 -13.72592 -13.36726 -13.17293 -12.96284 -12.50678 -12.44618 -12.42448 -12.31384 -12.19544 -12.12284 -11.80227 -11.52536 -11.27877 -10.98474 -10.91815 -10.82317 -10.61318 -10.21755 -9.70726 -9.70248 -9.29854 -8.99869 -8.49356 -7.78289 -6.10299 -4.15912 -0.06062 0.44053 2.00017 2.13877 2.98897 3.15808 3.26568 3.31714 3.33880 3.38058 3.73604 3.79172 4.13905 4.26183 4.38750 4.45642 4.51224 4.73915 4.90405 5.00654 5.01061 5.21328 5.24386 5.35318 5.39184 5.47054 5.58507 5.60658 5.68167 5.81359 6.01863 6.15223 6.16610 6.20420 6.92561 7.34648 7.38737 7.46047 7.85312 8.14657 8.22543 8.77337 8.92753 9.49445 10.97819 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019997 B = 0.002631 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.900393 B =10638.165617 C =11446.842195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.072 3.928 3 H 0.106 0.894 4 O -0.318 6.318 5 C 0.510 3.490 6 O -0.496 6.496 7 C -0.062 4.062 8 C -0.103 4.103 9 C 0.123 3.877 10 F -0.123 7.123 11 C -0.160 4.160 12 C 0.120 3.880 13 F -0.125 7.125 14 C -0.102 4.102 15 C 0.510 3.490 16 O -0.520 6.520 17 N -0.595 5.595 18 C 0.073 3.927 19 C 0.245 3.755 20 C -0.531 4.531 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.036 0.964 38 H 0.047 0.953 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 6.521 22.018 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 H 0.123 0.877 4 O -0.233 6.233 5 C 0.354 3.646 6 O -0.385 6.385 7 C -0.063 4.063 8 C -0.122 4.122 9 C 0.104 3.896 10 F -0.101 7.101 11 C -0.179 4.179 12 C 0.101 3.899 13 F -0.103 7.103 14 C -0.121 4.121 15 C 0.294 3.706 16 O -0.395 6.395 17 N -0.329 5.329 18 C -0.071 4.071 19 C 0.127 3.873 20 C -0.569 4.569 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.184 0.816 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.243 6.151 21.863 22.713 hybrid contribution -0.776 -0.392 -0.345 0.935 sum -0.532 5.760 21.518 22.282 Atomic orbital electron populations 1.22182 0.91807 1.04334 1.04000 1.22775 0.96252 0.97446 0.82183 0.87658 1.86656 1.76314 1.40862 1.19423 1.20833 0.74737 0.85049 0.83998 1.90842 1.47899 1.15541 1.84257 1.18599 1.03120 0.92937 0.91676 1.21718 0.97057 0.94749 0.98657 1.17090 1.00322 0.78399 0.93834 1.91591 1.91656 1.29968 1.96873 1.21316 1.03722 0.92847 1.00031 1.16931 1.01126 0.88351 0.83510 1.91571 1.92528 1.75730 1.50500 1.21255 0.98470 1.02253 0.90112 1.19704 0.80296 0.86844 0.83748 1.90701 1.45168 1.18361 1.85301 1.48079 1.65174 1.11937 1.07670 1.21851 0.99038 0.82607 1.03635 1.19385 0.96730 0.92091 0.79115 1.21414 0.94751 1.31526 1.09244 0.92337 1.24940 0.96271 0.96101 0.96733 1.69933 1.23187 1.40421 1.19638 0.86479 0.82731 0.79017 0.79099 1.20599 1.21036 1.19842 0.90476 0.89245 0.91134 0.81642 0.82649 0.82314 0.93338 0.89992 0.92222 0.94578 0.93522 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.19 37.16 0.34 -1.87 16 2 C 0.07 1.13 2.14 -27.89 -0.06 1.07 16 3 H 0.11 1.50 6.31 -51.93 -0.33 1.17 16 4 O -0.32 -4.92 8.72 -47.04 -0.41 -5.33 16 5 C 0.51 6.79 7.87 34.61 0.27 7.07 16 6 O -0.50 -7.12 15.60 -19.24 -0.30 -7.42 16 7 C -0.06 -0.66 5.87 -105.00 -0.62 -1.28 16 8 C -0.10 -1.05 9.59 -39.09 -0.38 -1.42 16 9 C 0.12 1.12 7.29 -39.49 -0.29 0.83 16 10 F -0.12 -1.21 17.26 2.25 0.04 -1.18 16 11 C -0.16 -1.20 10.00 -39.36 -0.39 -1.60 16 12 C 0.12 0.99 7.29 -39.49 -0.29 0.70 16 13 F -0.12 -1.05 17.26 2.25 0.04 -1.01 16 14 C -0.10 -0.92 9.57 -39.09 -0.37 -1.29 16 15 C 0.51 10.51 6.95 -10.99 -0.08 10.43 16 16 O -0.52 -12.97 16.13 -13.54 -0.22 -13.19 16 17 N -0.60 -12.24 2.86 -182.95 -0.52 -12.77 16 18 C 0.07 1.09 9.79 59.85 0.59 1.68 16 19 C 0.25 6.25 5.18 -5.20 -0.03 6.22 16 20 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 21 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 24 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.14 6.33 -51.93 -0.33 0.81 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.17 1.78 7.61 -52.48 -0.40 1.38 16 32 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.16 1.32 7.65 -52.49 -0.40 0.92 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 36 H 0.06 0.74 4.92 -51.93 -0.26 0.48 16 37 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 38 H 0.05 1.35 7.36 -51.93 -0.38 0.96 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -32.70 352.44 -6.23 -38.93 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.17 Total: -1.62 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -1.72 Total: 7.26 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.21 Total: -38.10 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.93 Total: -25.94 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.08 Total: -2.19 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.70 -6.23 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729238044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.867 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds