Wall clock time and date at job start Tue Mar 31 2020 15:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47274 * 2 1 4 4 O 1.45203 * 109.47127 * 119.99449 * 2 1 3 5 5 C 1.34708 * 117.00294 * 269.99814 * 4 2 1 6 6 O 1.21471 * 120.00047 * 359.97438 * 5 4 2 7 7 C 1.47733 * 120.00422 * 180.02562 * 5 4 2 8 8 C 1.39602 * 120.12483 * 359.72293 * 7 5 4 9 9 C 1.38193 * 119.87228 * 179.77068 * 8 7 5 10 10 F 1.35099 * 119.93439 * 180.27581 * 9 8 7 11 11 C 1.38532 * 120.12555 * 0.50600 * 9 8 7 12 12 C 1.38537 * 120.25673 * 359.74520 * 11 9 8 13 13 F 1.35096 * 119.93802 * 179.97438 * 12 11 9 14 14 C 1.38190 * 120.12699 * 0.02562 * 12 11 9 15 15 C 1.50696 * 109.46835 * 239.99447 * 2 1 3 16 16 O 1.21280 * 120.00000 * 256.02118 * 15 2 1 17 17 N 1.34775 * 120.00229 * 76.03491 * 15 2 1 18 18 C 1.46505 * 119.99910 * 5.35637 * 17 15 2 19 19 C 1.46492 * 120.00249 * 185.36470 * 17 15 2 20 20 C 1.50706 * 109.47383 * 89.99465 * 19 17 15 21 21 H 1.07993 * 119.99804 * 0.02562 * 20 19 17 22 22 C 1.37875 * 120.00132 * 180.02562 * 20 19 17 23 23 N 1.31519 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00189 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47048 * 89.99817 * 24 22 20 26 26 H 1.48495 * 109.47289 * 209.99515 * 24 22 20 27 27 H 1.48496 * 109.47033 * 329.99860 * 24 22 20 28 28 H 1.08994 * 109.47116 * 186.14636 * 1 2 3 29 29 H 1.08996 * 109.47218 * 66.13882 * 1 2 3 30 30 H 1.09006 * 109.46975 * 306.14350 * 1 2 3 31 31 H 1.08005 * 120.05990 * 359.97438 * 8 7 5 32 32 H 1.08001 * 119.87167 * 179.76893 * 11 9 8 33 33 H 1.07995 * 120.06554 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.47126 * 84.82860 * 18 17 15 35 35 H 1.08997 * 109.47350 * 204.83266 * 18 17 15 36 36 H 1.09000 * 109.46993 * 324.82939 * 18 17 15 37 37 H 1.09007 * 109.47186 * 209.99560 * 19 17 15 38 38 H 1.09000 * 109.47111 * 329.99288 * 19 17 15 39 39 H 0.97005 * 119.99915 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2179 0.0668 2.2851 6 8 1.9979 1.2610 2.2541 7 6 2.7102 -0.5614 3.5282 8 6 2.9595 -1.9344 3.5682 9 6 3.4244 -2.5159 4.7325 10 9 3.6714 -3.8436 4.7709 11 6 3.6332 -1.7408 5.8615 12 6 3.3826 -0.3787 5.8292 13 9 3.5880 0.3710 6.9342 14 6 2.9220 0.2145 4.6693 15 6 2.0322 -0.7105 -1.2304 16 8 2.4735 -1.8368 -1.1426 17 7 1.9913 -0.0944 -2.4283 18 6 1.5690 1.3057 -2.5179 19 6 2.3687 -0.8245 -3.6409 20 6 1.1505 -1.4921 -4.2251 21 1 0.1909 -1.3830 -3.7418 22 6 1.2609 -2.2422 -5.3767 23 7 2.4294 -2.3746 -5.9657 24 14 -0.2490 -3.0702 -6.1005 25 1 -0.9070 -2.1480 -7.0606 26 1 0.1578 -4.3117 -6.8064 27 1 -1.1982 -3.4092 -5.0100 28 1 -0.3633 -1.0217 0.1100 29 1 -0.3633 0.4157 -0.9398 30 1 -0.3633 0.6062 0.8299 31 1 2.7924 -2.5404 2.6900 32 1 3.9931 -2.2001 6.7703 33 1 2.7273 1.2765 4.6451 34 1 2.4230 1.9556 -2.3269 35 1 1.1774 1.5040 -3.5156 36 1 0.7926 1.4990 -1.7778 37 1 2.7861 -0.1288 -4.3689 38 1 3.1135 -1.5807 -3.3927 39 1 2.5070 -2.9020 -6.7761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729238044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:13 Heat of formation + Delta-G solvation = -193.027505 kcal Electronic energy + Delta-G solvation = -27101.555988 eV Core-core repulsion = 22645.288680 eV Total energy + Delta-G solvation = -4456.267307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.15374 -50.13576 -42.10497 -40.73201 -39.57103 -37.72536 -36.69262 -34.86616 -33.38228 -32.33484 -31.59609 -29.70661 -27.59334 -26.65054 -25.77577 -24.29589 -23.87937 -22.26387 -20.46597 -19.98036 -18.77405 -18.69155 -18.13106 -17.97032 -17.58608 -17.43343 -17.26184 -17.02866 -16.72466 -16.68609 -16.44038 -16.24068 -16.04938 -15.42721 -14.91299 -14.77275 -14.35847 -14.12162 -13.93897 -13.69998 -13.56313 -13.36137 -13.22199 -13.19764 -13.08009 -13.04344 -12.84327 -12.68028 -12.50459 -12.21120 -12.02425 -11.95361 -11.71845 -10.65575 -10.64088 -10.41954 -10.02471 -9.52755 -8.23145 -6.38002 -0.83774 -0.27993 1.01786 1.11182 1.38204 1.41180 1.50602 1.58671 2.18614 2.24967 2.40757 2.64276 3.03472 3.07337 3.25629 3.37300 3.55196 3.68135 3.73744 3.79365 3.81189 4.17455 4.29130 4.49258 4.51022 4.58150 4.64405 4.66230 4.73630 4.85716 4.87293 4.92876 5.08441 5.12506 5.21099 5.44574 5.51193 5.77759 6.02877 6.34919 6.58677 6.71217 7.18540 7.35471 8.84446 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019997 B = 0.002631 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.900393 B =10638.165617 C =11446.842195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 H 0.127 0.873 4 O -0.335 6.335 5 C 0.513 3.487 6 O -0.507 6.507 7 C -0.075 4.075 8 C -0.107 4.107 9 C 0.118 3.882 10 F -0.128 7.128 11 C -0.138 4.138 12 C 0.124 3.876 13 F -0.122 7.122 14 C -0.092 4.092 15 C 0.501 3.499 16 O -0.577 6.577 17 N -0.600 5.600 18 C 0.066 3.934 19 C 0.258 3.742 20 C -0.544 4.544 21 H 0.059 0.941 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.969 3.031 25 H -0.263 1.263 26 H -0.283 1.283 27 H -0.270 1.270 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.152 0.848 32 H 0.184 0.816 33 H 0.168 0.832 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.030 0.970 38 H 0.000 1.000 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 7.794 23.783 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.144 0.856 4 O -0.251 6.251 5 C 0.358 3.642 6 O -0.396 6.396 7 C -0.076 4.076 8 C -0.126 4.126 9 C 0.098 3.902 10 F -0.107 7.107 11 C -0.157 4.157 12 C 0.105 3.895 13 F -0.101 7.101 14 C -0.111 4.111 15 C 0.288 3.712 16 O -0.457 6.457 17 N -0.332 5.332 18 C -0.076 4.076 19 C 0.137 3.863 20 C -0.582 4.582 21 H 0.077 0.923 22 C -0.191 4.191 23 N -0.568 5.568 24 Si 0.793 3.207 25 H -0.188 1.188 26 H -0.209 1.209 27 H -0.195 1.195 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.170 0.830 32 H 0.201 0.799 33 H 0.185 0.815 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.018 0.982 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.151 7.484 23.645 24.828 hybrid contribution -0.267 -0.761 -0.809 1.142 sum -1.418 6.723 22.836 23.847 Atomic orbital electron populations 1.22198 0.89653 1.04341 1.05574 1.22638 0.97578 0.97135 0.80245 0.85573 1.86663 1.76786 1.41718 1.19911 1.21168 0.74201 0.84911 0.83923 1.90823 1.48618 1.15805 1.84396 1.18424 1.04903 0.93125 0.91185 1.21626 0.97504 0.94652 0.98853 1.17076 1.00815 0.78290 0.93979 1.91580 1.91779 1.30426 1.96896 1.21523 1.01549 0.92372 1.00244 1.16853 1.00922 0.88497 0.83231 1.91588 1.92477 1.75719 1.50274 1.21315 0.97562 1.02524 0.89693 1.20594 0.79122 0.86415 0.85078 1.90664 1.47603 1.21041 1.86345 1.48058 1.64877 1.13841 1.06410 1.22175 1.01102 0.79536 1.04799 1.18872 0.95222 0.91312 0.80858 1.21702 0.95177 1.31864 1.09481 0.92262 1.25867 0.99384 0.96672 0.97206 1.70057 1.25386 1.41226 1.20166 0.85397 0.78860 0.78033 0.78430 1.18801 1.20898 1.19497 0.91606 0.88375 0.88443 0.83008 0.79908 0.81472 0.90843 0.90135 0.88886 0.95196 0.98155 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.19 71.98 0.66 -3.32 16 2 C 0.08 2.51 2.14 29.85 0.06 2.57 16 3 H 0.13 3.31 6.31 -2.39 -0.02 3.30 16 4 O -0.34 -10.38 8.72 -49.94 -0.44 -10.82 16 5 C 0.51 13.23 7.87 70.33 0.55 13.79 16 6 O -0.51 -13.63 15.60 19.93 0.31 -13.32 16 7 C -0.07 -1.54 5.87 -20.11 -0.12 -1.66 16 8 C -0.11 -2.16 9.59 22.59 0.22 -1.95 16 9 C 0.12 2.00 7.29 22.33 0.16 2.16 16 10 F -0.13 -2.44 17.26 44.97 0.78 -1.66 16 11 C -0.14 -1.72 10.00 22.41 0.22 -1.50 16 12 C 0.12 1.72 7.29 22.33 0.16 1.89 16 13 F -0.12 -1.71 17.26 44.97 0.78 -0.94 16 14 C -0.09 -1.49 9.57 22.59 0.22 -1.27 16 15 C 0.50 21.07 6.95 87.66 0.61 21.67 16 16 O -0.58 -30.30 16.13 15.23 0.25 -30.05 16 17 N -0.60 -24.95 2.86 -851.13 -2.43 -27.38 16 18 C 0.07 1.87 9.79 127.77 1.25 3.12 16 19 C 0.26 13.69 5.18 85.64 0.44 14.13 16 20 C -0.54 -30.49 9.39 25.60 0.24 -30.25 16 21 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 22 C 0.01 0.44 5.46 84.65 0.46 0.90 16 23 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 24 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 25 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.10 2.25 6.33 -2.39 -0.02 2.23 16 30 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.15 3.46 7.61 -2.91 -0.02 3.44 16 32 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.17 2.41 7.65 -2.91 -0.02 2.39 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 2.33 8.03 -2.39 -0.02 2.32 16 36 H 0.09 2.03 4.92 -2.39 -0.01 2.02 16 37 H 0.03 1.60 8.07 -2.38 -0.02 1.58 16 38 H 0.00 0.02 7.36 -2.39 -0.02 0.00 16 39 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -73.37 352.44 7.81 -65.56 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.10 Total: 7.58 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 5.15 Total: 20.29 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -2.15 Total: -82.61 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: 0.12 Total: -54.19 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 1.55 Total: -2.60 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -73.37 7.81 -65.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729238044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.466 kcal (2) G-P(sol) polarization free energy of solvation -73.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds