Wall clock time and date at job start Tue Mar 31 2020 15:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46868 * 2 1 4 4 O 1.45202 * 109.46961 * 239.99448 * 2 1 3 5 5 C 1.34710 * 116.99623 * 90.00461 * 4 2 1 6 6 O 1.21473 * 120.00082 * 359.97438 * 5 4 2 7 7 C 1.47742 * 119.99949 * 180.27328 * 5 4 2 8 8 C 1.39604 * 120.12050 * 359.44488 * 7 5 4 9 9 C 1.38190 * 119.86769 * 179.72224 * 8 7 5 10 10 F 1.35101 * 119.94038 * 180.27702 * 9 8 7 11 11 C 1.38542 * 120.12498 * 0.57659 * 9 8 7 12 12 C 1.38531 * 120.25573 * 359.67885 * 11 9 8 13 13 F 1.35101 * 119.93873 * 180.02562 * 12 11 9 14 14 C 1.38192 * 120.12809 * 0.04454 * 12 11 9 15 15 C 1.50699 * 109.47061 * 119.99472 * 2 1 3 16 16 O 1.21277 * 120.00003 * 119.99780 * 15 2 1 17 17 N 1.34783 * 120.00147 * 300.00410 * 15 2 1 18 18 C 1.46498 * 119.99760 * 359.97438 * 17 15 2 19 19 C 1.46499 * 120.00123 * 179.97438 * 17 15 2 20 20 C 1.50700 * 109.46568 * 89.99907 * 19 17 15 21 21 H 1.07997 * 120.00657 * 0.02562 * 20 19 17 22 22 C 1.37880 * 119.99748 * 180.02562 * 20 19 17 23 23 N 1.31513 * 120.00227 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00007 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47060 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46912 * 119.99964 * 24 22 20 27 27 H 1.48498 * 109.47010 * 239.99640 * 24 22 20 28 28 H 1.09001 * 109.47307 * 60.00762 * 1 2 3 29 29 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47694 * 300.00073 * 1 2 3 31 31 H 1.07995 * 120.06976 * 359.97438 * 8 7 5 32 32 H 1.08001 * 119.86788 * 179.69616 * 11 9 8 33 33 H 1.07997 * 120.06765 * 180.02562 * 14 12 11 34 34 H 1.09007 * 109.47112 * 90.00345 * 18 17 15 35 35 H 1.08996 * 109.47177 * 210.00015 * 18 17 15 36 36 H 1.08999 * 109.47240 * 330.00274 * 18 17 15 37 37 H 1.08995 * 109.47557 * 209.99601 * 19 17 15 38 38 H 1.08997 * 109.46987 * 330.00650 * 19 17 15 39 39 H 0.96994 * 120.00434 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2179 0.0665 -2.2850 6 8 1.9970 1.2606 -2.2544 7 6 2.7039 -0.5631 -3.5301 8 6 2.9637 -1.9342 -3.5666 9 6 3.4126 -2.5187 -4.7356 10 9 3.6591 -3.8465 -4.7741 11 6 3.6163 -1.7446 -5.8663 12 6 3.3653 -0.3826 -5.8344 13 9 3.5657 0.3661 -6.9410 14 6 2.9107 0.2118 -4.6726 15 6 2.0323 -0.7103 1.2305 16 8 2.7295 -1.6964 1.1193 17 7 1.7067 -0.2498 2.4547 18 6 0.8648 0.9416 2.5889 19 6 2.1945 -0.9406 3.6509 20 6 3.5222 -0.3575 4.0612 21 1 3.9587 0.4474 3.4885 22 6 4.1797 -0.8517 5.1678 23 7 3.6485 -1.8322 5.8649 24 14 5.8251 -0.1284 5.6769 25 1 6.2019 0.9560 4.7349 26 1 5.7187 0.4248 7.0508 27 1 6.8623 -1.1908 5.6500 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.8102 -2.5377 -2.6842 32 1 3.9720 -2.2049 -6.7763 33 1 2.7149 1.2736 -4.6489 34 1 -0.1833 0.6441 2.6221 35 1 1.1226 1.4669 3.5085 36 1 1.0287 1.6003 1.7361 37 1 1.4766 -0.8150 4.4613 38 1 2.3154 -2.0018 3.4336 39 1 4.1108 -2.1796 6.6436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729238045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:16 Heat of formation + Delta-G solvation = -170.845232 kcal Electronic energy + Delta-G solvation = -27136.114143 eV Core-core repulsion = 22680.808732 eV Total energy + Delta-G solvation = -4455.305412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.46494 -49.38033 -40.98154 -39.39043 -38.55917 -36.53489 -35.02139 -33.01967 -32.17169 -31.30722 -30.83170 -27.73360 -26.36015 -25.58605 -24.22013 -23.31560 -22.56725 -21.19352 -19.16136 -18.90630 -17.83316 -17.16718 -16.89186 -16.66984 -16.56202 -16.51907 -16.10751 -16.00933 -15.71919 -15.70517 -15.30972 -14.72424 -14.65305 -14.28353 -13.71276 -13.45695 -13.20371 -12.99296 -12.55528 -12.44825 -12.41921 -12.33837 -12.22187 -12.15076 -11.72859 -11.45704 -11.20776 -10.95059 -10.88452 -10.81928 -10.63311 -10.20910 -9.68597 -9.67769 -9.28204 -8.99569 -8.48899 -7.79086 -6.09815 -4.14909 -0.04181 0.45741 2.02016 2.15297 3.00702 3.18605 3.27274 3.33035 3.35338 3.39714 3.73600 3.80382 4.14446 4.27709 4.40267 4.46347 4.52776 4.72685 4.86935 4.98047 5.02189 5.22892 5.25065 5.33928 5.40470 5.47171 5.56925 5.58108 5.64624 5.77976 5.92070 6.16558 6.16820 6.19291 6.91906 7.33518 7.39032 7.47135 7.86098 8.15428 8.22184 8.78365 8.93686 9.50490 10.98378 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015476 B = 0.002770 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.820036 B =10105.229291 C =10690.023822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 H 0.109 0.891 4 O -0.317 6.317 5 C 0.511 3.489 6 O -0.496 6.496 7 C -0.061 4.061 8 C -0.102 4.102 9 C 0.123 3.877 10 F -0.123 7.123 11 C -0.159 4.159 12 C 0.120 3.880 13 F -0.125 7.125 14 C -0.102 4.102 15 C 0.509 3.491 16 O -0.519 6.519 17 N -0.594 5.594 18 C 0.075 3.925 19 C 0.246 3.754 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 3.602 -21.493 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.013 3.987 3 H 0.127 0.873 4 O -0.232 6.232 5 C 0.355 3.645 6 O -0.385 6.385 7 C -0.063 4.063 8 C -0.121 4.121 9 C 0.103 3.897 10 F -0.101 7.101 11 C -0.179 4.179 12 C 0.101 3.899 13 F -0.103 7.103 14 C -0.121 4.121 15 C 0.293 3.707 16 O -0.394 6.394 17 N -0.328 5.328 18 C -0.069 4.069 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.183 0.817 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.931 3.274 -21.351 22.400 hybrid contribution 1.002 0.449 0.203 1.117 sum -4.929 3.724 -21.149 22.032 Atomic orbital electron populations 1.22422 0.92153 1.04294 1.04495 1.22716 0.95858 0.97755 0.82374 0.87320 1.86633 1.76378 1.40797 1.19359 1.20819 0.74710 0.85050 0.83960 1.90845 1.47824 1.15546 1.84301 1.18594 1.03112 0.92961 0.91606 1.21702 0.97120 0.94742 0.98567 1.17089 1.00427 0.78381 0.93780 1.91589 1.91667 1.29964 1.96892 1.21313 1.03689 0.92849 1.00062 1.16930 1.01171 0.88364 0.83450 1.91572 1.92601 1.75792 1.50369 1.21256 0.98477 1.02231 0.90114 1.19717 0.81781 0.85432 0.83790 1.90711 1.36919 1.25982 1.85837 1.48061 1.49782 1.28327 1.06617 1.21902 0.93982 0.88008 1.03012 1.19371 0.94429 0.93760 0.79659 1.21458 1.04805 1.19207 1.11359 0.92339 1.24934 0.98002 0.94900 0.96205 1.69932 1.38995 1.25963 1.18352 0.86429 0.83628 0.79087 0.78217 1.19781 1.20906 1.20798 0.91233 0.90841 0.88653 0.81681 0.82651 0.82314 0.92933 0.90235 0.92250 0.94527 0.93590 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 9.19 37.16 0.34 -1.77 16 2 C 0.07 1.12 2.18 -27.88 -0.06 1.05 16 3 H 0.11 1.63 6.42 -51.93 -0.33 1.30 16 4 O -0.32 -4.95 8.66 -47.20 -0.41 -5.36 16 5 C 0.51 7.01 7.87 34.62 0.27 7.28 16 6 O -0.50 -7.36 15.60 -19.25 -0.30 -7.66 16 7 C -0.06 -0.68 5.87 -105.00 -0.62 -1.29 16 8 C -0.10 -1.06 9.59 -39.09 -0.38 -1.44 16 9 C 0.12 1.14 7.29 -39.49 -0.29 0.85 16 10 F -0.12 -1.23 17.26 2.25 0.04 -1.19 16 11 C -0.16 -1.24 10.00 -39.36 -0.39 -1.64 16 12 C 0.12 1.02 7.29 -39.49 -0.29 0.73 16 13 F -0.12 -1.09 17.26 2.25 0.04 -1.05 16 14 C -0.10 -0.96 9.57 -39.09 -0.37 -1.33 16 15 C 0.51 10.46 7.15 -10.98 -0.08 10.38 16 16 O -0.52 -13.01 16.08 -14.10 -0.23 -13.23 16 17 N -0.59 -12.13 2.86 -182.96 -0.52 -12.66 16 18 C 0.07 1.10 8.80 59.85 0.53 1.63 16 19 C 0.25 6.26 5.16 -5.19 -0.03 6.23 16 20 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 21 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 24 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 1.00 4.53 -51.93 -0.24 0.76 16 31 H 0.17 1.79 7.61 -52.49 -0.40 1.39 16 32 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.16 1.38 7.65 -52.49 -0.40 0.98 16 34 H 0.05 0.63 6.95 -51.92 -0.36 0.27 16 35 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.06 0.73 6.01 -51.93 -0.31 0.41 16 37 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -33.20 349.89 -6.25 -39.45 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.08 Total: -2.03 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -1.78 Total: 7.24 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.21 Total: -38.07 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.94 Total: -26.26 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.08 Total: -2.24 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.20 -6.25 -39.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729238045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.392 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds