Wall clock time and date at job start Tue Mar 31 2020 15:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46868 * 2 1 4 4 O 1.45202 * 109.46961 * 239.99448 * 2 1 3 5 5 C 1.34710 * 116.99623 * 90.00461 * 4 2 1 6 6 O 1.21473 * 120.00082 * 359.97438 * 5 4 2 7 7 C 1.47742 * 119.99949 * 180.27328 * 5 4 2 8 8 C 1.39604 * 120.12050 * 359.44488 * 7 5 4 9 9 C 1.38190 * 119.86769 * 179.72224 * 8 7 5 10 10 F 1.35101 * 119.94038 * 180.27702 * 9 8 7 11 11 C 1.38542 * 120.12498 * 0.57659 * 9 8 7 12 12 C 1.38531 * 120.25573 * 359.67885 * 11 9 8 13 13 F 1.35101 * 119.93873 * 180.02562 * 12 11 9 14 14 C 1.38192 * 120.12809 * 0.04454 * 12 11 9 15 15 C 1.50699 * 109.47061 * 119.99472 * 2 1 3 16 16 O 1.21277 * 120.00003 * 119.99780 * 15 2 1 17 17 N 1.34783 * 120.00147 * 300.00410 * 15 2 1 18 18 C 1.46498 * 119.99760 * 359.97438 * 17 15 2 19 19 C 1.46499 * 120.00123 * 179.97438 * 17 15 2 20 20 C 1.50700 * 109.46568 * 89.99907 * 19 17 15 21 21 H 1.07997 * 120.00657 * 0.02562 * 20 19 17 22 22 C 1.37880 * 119.99748 * 180.02562 * 20 19 17 23 23 N 1.31513 * 120.00227 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00007 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47060 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46912 * 119.99964 * 24 22 20 27 27 H 1.48498 * 109.47010 * 239.99640 * 24 22 20 28 28 H 1.09001 * 109.47307 * 60.00762 * 1 2 3 29 29 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47694 * 300.00073 * 1 2 3 31 31 H 1.07995 * 120.06976 * 359.97438 * 8 7 5 32 32 H 1.08001 * 119.86788 * 179.69616 * 11 9 8 33 33 H 1.07997 * 120.06765 * 180.02562 * 14 12 11 34 34 H 1.09007 * 109.47112 * 90.00345 * 18 17 15 35 35 H 1.08996 * 109.47177 * 210.00015 * 18 17 15 36 36 H 1.08999 * 109.47240 * 330.00274 * 18 17 15 37 37 H 1.08995 * 109.47557 * 209.99601 * 19 17 15 38 38 H 1.08997 * 109.46987 * 330.00650 * 19 17 15 39 39 H 0.96994 * 120.00434 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2179 0.0665 -2.2850 6 8 1.9970 1.2606 -2.2544 7 6 2.7039 -0.5631 -3.5301 8 6 2.9637 -1.9342 -3.5666 9 6 3.4126 -2.5187 -4.7356 10 9 3.6591 -3.8465 -4.7741 11 6 3.6163 -1.7446 -5.8663 12 6 3.3653 -0.3826 -5.8344 13 9 3.5657 0.3661 -6.9410 14 6 2.9107 0.2118 -4.6726 15 6 2.0323 -0.7103 1.2305 16 8 2.7295 -1.6964 1.1193 17 7 1.7067 -0.2498 2.4547 18 6 0.8648 0.9416 2.5889 19 6 2.1945 -0.9406 3.6509 20 6 3.5222 -0.3575 4.0612 21 1 3.9587 0.4474 3.4885 22 6 4.1797 -0.8517 5.1678 23 7 3.6485 -1.8322 5.8649 24 14 5.8251 -0.1284 5.6769 25 1 6.2019 0.9560 4.7349 26 1 5.7187 0.4248 7.0508 27 1 6.8623 -1.1908 5.6500 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.8102 -2.5377 -2.6842 32 1 3.9720 -2.2049 -6.7763 33 1 2.7149 1.2736 -4.6489 34 1 -0.1833 0.6441 2.6221 35 1 1.1226 1.4669 3.5085 36 1 1.0287 1.6003 1.7361 37 1 1.4766 -0.8150 4.4613 38 1 2.3154 -2.0018 3.4336 39 1 4.1108 -2.1796 6.6436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729238045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:16 Heat of formation + Delta-G solvation = -189.706184 kcal Electronic energy + Delta-G solvation = -27136.932015 eV Core-core repulsion = 22680.808732 eV Total energy + Delta-G solvation = -4456.123284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.15822 -50.13974 -42.11097 -40.75083 -39.57354 -37.72053 -36.73785 -34.94270 -33.35432 -32.34544 -31.60388 -29.57109 -27.75966 -26.57757 -25.75243 -24.28903 -23.87998 -22.27945 -20.51819 -19.99721 -18.80543 -18.69916 -18.08137 -17.95568 -17.59015 -17.47762 -17.26424 -17.01216 -16.74486 -16.68345 -16.44489 -16.40651 -15.83523 -15.43370 -14.90984 -14.82654 -14.37089 -14.20887 -13.95185 -13.75304 -13.56172 -13.35966 -13.22069 -13.21566 -13.04815 -12.97624 -12.82291 -12.62392 -12.43158 -12.22476 -11.99664 -11.95376 -11.69598 -10.66190 -10.64654 -10.42448 -10.03022 -9.52399 -8.24749 -6.39140 -0.84232 -0.28547 1.02029 1.11454 1.36004 1.38370 1.49646 1.60572 2.18574 2.23950 2.39593 2.63774 3.02841 3.05525 3.25184 3.37339 3.54500 3.67605 3.73304 3.79314 3.82607 4.17096 4.32446 4.49708 4.50785 4.62257 4.63361 4.68209 4.73406 4.85036 4.88288 4.94462 5.10123 5.12893 5.21149 5.44035 5.50475 5.77061 6.02526 6.34662 6.59256 6.70084 7.19137 7.34873 8.82729 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015476 B = 0.002770 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.820036 B =10105.229291 C =10690.023822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.080 3.920 3 H 0.120 0.880 4 O -0.334 6.334 5 C 0.513 3.487 6 O -0.509 6.509 7 C -0.075 4.075 8 C -0.106 4.106 9 C 0.118 3.882 10 F -0.128 7.128 11 C -0.137 4.137 12 C 0.124 3.876 13 F -0.122 7.122 14 C -0.093 4.093 15 C 0.499 3.501 16 O -0.578 6.578 17 N -0.598 5.598 18 C 0.066 3.934 19 C 0.260 3.740 20 C -0.546 4.546 21 H 0.052 0.948 22 C 0.010 3.990 23 N -0.926 5.926 24 Si 0.966 3.034 25 H -0.269 1.269 26 H -0.268 1.268 27 H -0.282 1.282 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.153 0.847 32 H 0.184 0.816 33 H 0.166 0.834 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.034 0.966 38 H 0.002 0.998 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 5.333 -23.195 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.022 3.978 3 H 0.138 0.862 4 O -0.250 6.250 5 C 0.358 3.642 6 O -0.399 6.399 7 C -0.077 4.077 8 C -0.125 4.125 9 C 0.099 3.901 10 F -0.106 7.106 11 C -0.157 4.157 12 C 0.105 3.895 13 F -0.101 7.101 14 C -0.112 4.112 15 C 0.286 3.714 16 O -0.458 6.458 17 N -0.330 5.330 18 C -0.075 4.075 19 C 0.139 3.861 20 C -0.584 4.584 21 H 0.071 0.929 22 C -0.189 4.189 23 N -0.566 5.566 24 Si 0.791 3.209 25 H -0.193 1.193 26 H -0.193 1.193 27 H -0.208 1.208 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.171 0.829 32 H 0.202 0.798 33 H 0.184 0.816 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.052 0.948 38 H 0.020 0.980 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.139 5.051 -23.064 24.396 hybrid contribution 1.040 -0.111 0.666 1.240 sum -5.099 4.940 -22.399 23.497 Atomic orbital electron populations 1.22440 0.88934 1.04737 1.06409 1.22619 0.98032 0.96806 0.80314 0.86247 1.86637 1.76864 1.41623 1.19845 1.21180 0.74160 0.84907 0.83972 1.90824 1.48669 1.15918 1.84496 1.18427 1.04942 0.93213 0.91084 1.21619 0.97513 0.94595 0.98820 1.17068 1.00864 0.78294 0.93883 1.91581 1.91774 1.30354 1.96908 1.21526 1.01476 0.92336 1.00321 1.16851 1.00975 0.88541 0.83141 1.91588 1.92551 1.75792 1.50132 1.21312 0.97669 1.02463 0.89770 1.20620 0.80723 0.84881 0.85157 1.90671 1.39558 1.28702 1.86853 1.48030 1.50112 1.29547 1.05357 1.22269 0.94775 0.86260 1.04222 1.18854 0.93952 0.91825 0.81494 1.21727 1.05968 1.19200 1.11539 0.92935 1.25821 1.01695 0.95209 0.96220 1.70038 1.40613 1.27053 1.18851 0.85389 0.78832 0.78281 0.78437 1.19298 1.19273 1.20776 0.89146 0.91203 0.86775 0.82929 0.79844 0.81600 0.89489 0.90710 0.89158 0.94786 0.98026 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.19 71.98 0.66 -3.00 16 2 C 0.08 2.45 2.18 29.85 0.07 2.52 16 3 H 0.12 3.39 6.42 -2.39 -0.02 3.37 16 4 O -0.33 -10.51 8.66 -49.81 -0.43 -10.94 16 5 C 0.51 13.79 7.87 70.34 0.55 14.35 16 6 O -0.51 -14.46 15.60 19.92 0.31 -14.15 16 7 C -0.08 -1.61 5.87 -20.11 -0.12 -1.73 16 8 C -0.11 -2.20 9.59 22.59 0.22 -1.98 16 9 C 0.12 2.05 7.29 22.33 0.16 2.21 16 10 F -0.13 -2.45 17.26 44.97 0.78 -1.67 16 11 C -0.14 -1.79 10.00 22.41 0.22 -1.56 16 12 C 0.12 1.81 7.29 22.33 0.16 1.97 16 13 F -0.12 -1.80 17.26 44.97 0.78 -1.02 16 14 C -0.09 -1.60 9.57 22.59 0.22 -1.38 16 15 C 0.50 20.98 7.15 87.66 0.63 21.61 16 16 O -0.58 -30.51 16.08 15.78 0.25 -30.26 16 17 N -0.60 -24.66 2.86 -851.14 -2.43 -27.09 16 18 C 0.07 1.82 8.80 127.77 1.12 2.95 16 19 C 0.26 13.70 5.16 85.63 0.44 14.14 16 20 C -0.55 -31.16 9.39 25.60 0.24 -30.92 16 21 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 22 C 0.01 0.56 5.46 84.66 0.46 1.03 16 23 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 24 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.11 2.01 4.53 -2.39 -0.01 2.00 16 31 H 0.15 3.51 7.61 -2.91 -0.02 3.49 16 32 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.17 2.59 7.65 -2.91 -0.02 2.57 16 34 H 0.09 1.83 6.95 -2.38 -0.02 1.81 16 35 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 36 H 0.09 1.94 6.01 -2.39 -0.01 1.93 16 37 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 38 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 39 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -74.76 349.89 7.71 -67.05 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.11 Total: 6.22 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 5.04 Total: 20.20 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.15 Total: -82.13 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: 0.13 Total: -55.35 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 1.55 Total: -2.69 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -74.76 7.71 -67.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729238045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.660 kcal (2) G-P(sol) polarization free energy of solvation -74.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds