Wall clock time and date at job start Tue Mar 31 2020 15:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 O 1.45194 * 109.46979 * 239.99809 * 2 1 3 5 5 C 1.34730 * 117.00038 * 90.00641 * 4 2 1 6 6 O 1.21484 * 119.99878 * 359.97438 * 5 4 2 7 7 C 1.47569 * 119.99986 * 180.02562 * 5 4 2 8 8 C 1.39708 * 120.16084 * 359.71819 * 7 5 4 9 9 C 1.38054 * 119.84404 * 179.81474 * 8 7 5 10 10 F 1.35108 * 119.91283 * 180.20531 * 9 8 7 11 11 C 1.38667 * 120.17357 * 0.44591 * 9 8 7 12 12 C 1.38190 * 120.32593 * 359.78303 * 11 9 8 13 13 C 1.38305 * 120.14924 * 0.02562 * 12 11 9 14 14 F 1.35102 * 120.08561 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 16 16 O 1.21276 * 120.00180 * 114.99950 * 15 2 1 17 17 N 1.34778 * 119.99817 * 295.00053 * 15 2 1 18 18 C 1.46502 * 120.00356 * 359.97438 * 17 15 2 19 19 C 1.46510 * 119.99810 * 179.97438 * 17 15 2 20 20 C 1.50700 * 109.47088 * 89.99667 * 19 17 15 21 21 H 1.08002 * 120.00014 * 0.02562 * 20 19 17 22 22 C 1.37870 * 120.00259 * 179.97438 * 20 19 17 23 23 N 1.31520 * 119.99933 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00316 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47280 * 89.99934 * 24 22 20 26 26 H 1.48503 * 109.46838 * 209.99992 * 24 22 20 27 27 H 1.48495 * 109.46968 * 329.99813 * 24 22 20 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.07993 * 120.07910 * 0.02562 * 8 7 5 32 32 H 1.08004 * 119.83713 * 179.76674 * 11 9 8 33 33 H 1.07996 * 119.92293 * 179.97438 * 12 11 9 34 34 H 1.08999 * 109.46601 * 90.00278 * 18 17 15 35 35 H 1.09000 * 109.46861 * 210.00048 * 18 17 15 36 36 H 1.09002 * 109.46766 * 330.00032 * 18 17 15 37 37 H 1.08994 * 109.47027 * 209.99740 * 19 17 15 38 38 H 1.09002 * 109.47025 * 330.00346 * 19 17 15 39 39 H 0.97002 * 120.00073 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2180 0.0668 -2.2851 6 8 1.9971 1.2610 -2.2544 7 6 2.7087 -0.5612 -3.5271 8 6 2.9683 -1.9334 -3.5648 9 6 3.4235 -2.5148 -4.7313 10 9 3.6711 -3.8424 -4.7704 11 6 3.6320 -1.7388 -5.8614 12 6 3.3820 -0.3801 -5.8308 13 6 2.9220 0.2156 -4.6705 14 9 2.6785 1.5442 -4.6418 15 6 2.0323 -0.7104 1.2305 16 8 2.6529 -1.7466 1.1216 17 7 1.7918 -0.1941 2.4520 18 6 1.0426 1.0580 2.5836 19 6 2.2796 -0.8851 3.6483 20 6 3.6613 -0.3879 3.9872 21 1 4.1291 0.3675 3.3733 22 6 4.3278 -0.8966 5.0817 23 7 3.7580 -1.8161 5.8297 24 14 6.0402 -0.2798 5.5023 25 1 5.9359 0.8842 6.4185 26 1 6.8080 -1.3644 6.1651 27 1 6.7379 0.1311 4.2575 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.8101 -2.5386 -2.6844 32 1 3.9919 -2.1986 -6.7701 33 1 3.5471 0.2181 -6.7147 34 1 -0.0215 0.8374 2.6678 35 1 1.3754 1.5884 3.4758 36 1 1.2166 1.6795 1.7052 37 1 1.6070 -0.6859 4.4825 38 1 2.3159 -1.9579 3.4588 39 1 4.2267 -2.1737 6.6000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729285657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:22 Heat of formation + Delta-G solvation = -171.358355 kcal Electronic energy + Delta-G solvation = -27453.151658 eV Core-core repulsion = 22997.823996 eV Total energy + Delta-G solvation = -4455.327662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.29126 -49.28101 -40.83557 -39.30563 -38.60168 -36.45454 -34.96338 -33.00234 -32.38349 -31.33984 -30.48003 -27.74397 -26.24311 -25.48503 -24.29749 -23.39897 -22.43866 -21.14989 -19.01625 -18.70621 -17.96832 -17.62637 -17.04622 -16.60704 -16.54112 -16.44253 -15.91824 -15.75284 -15.60894 -15.27104 -14.79645 -14.62552 -14.55510 -14.20732 -13.74607 -13.60279 -13.26854 -13.00961 -12.90201 -12.44604 -12.36384 -12.20898 -12.12214 -11.93722 -11.72442 -11.48146 -11.22508 -10.94525 -10.78885 -10.72493 -10.59570 -10.19279 -9.86295 -9.67852 -9.07805 -8.96397 -8.47123 -7.76936 -6.08235 -4.13335 -0.01163 0.48566 2.10481 2.22870 3.00875 3.21114 3.28805 3.35629 3.40737 3.59703 3.61049 3.79771 4.02208 4.28168 4.41550 4.46079 4.61046 4.77465 4.91816 5.02809 5.09321 5.26492 5.28969 5.32581 5.44755 5.50272 5.57381 5.61414 5.62768 5.81925 5.95324 6.17981 6.18990 6.25190 6.94178 7.35288 7.41845 7.52988 7.87650 8.17198 8.24557 8.80478 8.95522 9.51941 10.99909 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.003026 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.560377 B = 9251.637373 C = 9924.070482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.108 0.892 4 O -0.318 6.318 5 C 0.508 3.492 6 O -0.490 6.490 7 C -0.130 4.130 8 C -0.064 4.064 9 C 0.079 3.921 10 F -0.128 7.128 11 C -0.090 4.090 12 C -0.140 4.140 13 C 0.155 3.845 14 F -0.109 7.109 15 C 0.509 3.491 16 O -0.519 6.519 17 N -0.595 5.595 18 C 0.075 3.925 19 C 0.247 3.753 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.783 3.385 -22.771 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.126 0.874 4 O -0.233 6.233 5 C 0.351 3.649 6 O -0.378 6.378 7 C -0.133 4.133 8 C -0.083 4.083 9 C 0.060 3.940 10 F -0.106 7.106 11 C -0.109 4.109 12 C -0.158 4.158 13 C 0.135 3.865 14 F -0.087 7.087 15 C 0.293 3.707 16 O -0.395 6.395 17 N -0.328 5.328 18 C -0.069 4.069 19 C 0.128 3.872 20 C -0.569 4.569 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.185 0.815 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.501 3.062 -22.576 23.438 hybrid contribution 0.943 0.526 0.415 1.157 sum -4.558 3.588 -22.161 22.908 Atomic orbital electron populations 1.22293 0.92131 1.04164 1.04194 1.22714 0.95874 0.97730 0.82399 0.87419 1.86628 1.76592 1.40795 1.19317 1.20692 0.75144 0.85124 0.83927 1.90892 1.47511 1.15271 1.84141 1.18975 1.08518 0.93892 0.91869 1.21532 0.94577 0.93600 0.98597 1.17502 1.03119 0.78669 0.94757 1.91574 1.91927 1.30186 1.96933 1.21279 0.98150 0.93161 0.98309 1.20961 1.02217 0.95032 0.97622 1.17675 0.97396 0.78288 0.93158 1.91632 1.90898 1.29411 1.96756 1.19715 0.81232 0.85957 0.83793 1.90705 1.39629 1.23397 1.85735 1.48073 1.53985 1.23909 1.06850 1.21861 0.95392 0.86700 1.02905 1.19363 0.94332 0.93794 0.79676 1.21426 1.01031 1.23086 1.11334 0.92401 1.24929 0.98236 0.94840 0.96015 1.69930 1.38180 1.27983 1.17180 0.86480 0.84000 0.78380 0.78491 1.20577 1.21008 1.19874 0.91208 0.90836 0.89097 0.81528 0.82892 0.82572 0.93043 0.90219 0.92313 0.94551 0.93602 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.28 37.16 0.34 -1.83 16 2 C 0.07 1.17 2.17 -27.88 -0.06 1.11 16 3 H 0.11 1.71 6.15 -51.93 -0.32 1.39 16 4 O -0.32 -5.28 8.67 -47.24 -0.41 -5.69 16 5 C 0.51 7.67 7.87 34.54 0.27 7.94 16 6 O -0.49 -8.14 14.60 -19.25 -0.28 -8.42 16 7 C -0.13 -1.58 5.88 -104.94 -0.62 -2.20 16 8 C -0.06 -0.69 9.59 -39.10 -0.38 -1.07 16 9 C 0.08 0.72 7.29 -39.49 -0.29 0.43 16 10 F -0.13 -1.28 17.26 2.25 0.04 -1.24 16 11 C -0.09 -0.59 10.01 -39.44 -0.39 -0.99 16 12 C -0.14 -0.97 10.01 -39.57 -0.40 -1.37 16 13 C 0.16 1.63 7.28 -38.95 -0.28 1.35 16 14 F -0.11 -1.34 15.55 2.25 0.04 -1.31 16 15 C 0.51 10.76 7.10 -10.99 -0.08 10.68 16 16 O -0.52 -13.26 16.09 -14.05 -0.23 -13.48 16 17 N -0.59 -12.45 2.86 -182.95 -0.52 -12.97 16 18 C 0.08 1.15 8.92 59.85 0.53 1.68 16 19 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 20 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 21 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 24 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.02 5.12 -51.93 -0.27 0.75 16 31 H 0.17 1.89 7.61 -52.49 -0.40 1.49 16 32 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 33 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.05 0.65 7.02 -51.93 -0.36 0.28 16 35 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 36 H 0.06 0.76 6.08 -51.93 -0.32 0.45 16 37 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -34.68 348.64 -6.31 -40.99 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.12 Total: -2.79 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -1.79 Total: 8.45 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.21 Total: -38.60 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.92 Total: -27.59 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.07 Total: -2.55 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.68 -6.31 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729285657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.371 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds