Wall clock time and date at job start Tue Mar 31 2020 15:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 O 1.45194 * 109.46979 * 239.99809 * 2 1 3 5 5 C 1.34730 * 117.00038 * 90.00641 * 4 2 1 6 6 O 1.21484 * 119.99878 * 359.97438 * 5 4 2 7 7 C 1.47569 * 119.99986 * 180.02562 * 5 4 2 8 8 C 1.39708 * 120.16084 * 359.71819 * 7 5 4 9 9 C 1.38054 * 119.84404 * 179.81474 * 8 7 5 10 10 F 1.35108 * 119.91283 * 180.20531 * 9 8 7 11 11 C 1.38667 * 120.17357 * 0.44591 * 9 8 7 12 12 C 1.38190 * 120.32593 * 359.78303 * 11 9 8 13 13 C 1.38305 * 120.14924 * 0.02562 * 12 11 9 14 14 F 1.35102 * 120.08561 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 16 16 O 1.21276 * 120.00180 * 114.99950 * 15 2 1 17 17 N 1.34778 * 119.99817 * 295.00053 * 15 2 1 18 18 C 1.46502 * 120.00356 * 359.97438 * 17 15 2 19 19 C 1.46510 * 119.99810 * 179.97438 * 17 15 2 20 20 C 1.50700 * 109.47088 * 89.99667 * 19 17 15 21 21 H 1.08002 * 120.00014 * 0.02562 * 20 19 17 22 22 C 1.37870 * 120.00259 * 179.97438 * 20 19 17 23 23 N 1.31520 * 119.99933 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00316 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47280 * 89.99934 * 24 22 20 26 26 H 1.48503 * 109.46838 * 209.99992 * 24 22 20 27 27 H 1.48495 * 109.46968 * 329.99813 * 24 22 20 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.07993 * 120.07910 * 0.02562 * 8 7 5 32 32 H 1.08004 * 119.83713 * 179.76674 * 11 9 8 33 33 H 1.07996 * 119.92293 * 179.97438 * 12 11 9 34 34 H 1.08999 * 109.46601 * 90.00278 * 18 17 15 35 35 H 1.09000 * 109.46861 * 210.00048 * 18 17 15 36 36 H 1.09002 * 109.46766 * 330.00032 * 18 17 15 37 37 H 1.08994 * 109.47027 * 209.99740 * 19 17 15 38 38 H 1.09002 * 109.47025 * 330.00346 * 19 17 15 39 39 H 0.97002 * 120.00073 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2180 0.0668 -2.2851 6 8 1.9971 1.2610 -2.2544 7 6 2.7087 -0.5612 -3.5271 8 6 2.9683 -1.9334 -3.5648 9 6 3.4235 -2.5148 -4.7313 10 9 3.6711 -3.8424 -4.7704 11 6 3.6320 -1.7388 -5.8614 12 6 3.3820 -0.3801 -5.8308 13 6 2.9220 0.2156 -4.6705 14 9 2.6785 1.5442 -4.6418 15 6 2.0323 -0.7104 1.2305 16 8 2.6529 -1.7466 1.1216 17 7 1.7918 -0.1941 2.4520 18 6 1.0426 1.0580 2.5836 19 6 2.2796 -0.8851 3.6483 20 6 3.6613 -0.3879 3.9872 21 1 4.1291 0.3675 3.3733 22 6 4.3278 -0.8966 5.0817 23 7 3.7580 -1.8161 5.8297 24 14 6.0402 -0.2798 5.5023 25 1 5.9359 0.8842 6.4185 26 1 6.8080 -1.3644 6.1651 27 1 6.7379 0.1311 4.2575 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.8101 -2.5386 -2.6844 32 1 3.9919 -2.1986 -6.7701 33 1 3.5471 0.2181 -6.7147 34 1 -0.0215 0.8374 2.6678 35 1 1.3754 1.5884 3.4758 36 1 1.2166 1.6795 1.7052 37 1 1.6070 -0.6859 4.4825 38 1 2.3159 -1.9579 3.4588 39 1 4.2267 -2.1737 6.6000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729285657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:21 Heat of formation + Delta-G solvation = -192.141635 kcal Electronic energy + Delta-G solvation = -27454.052889 eV Core-core repulsion = 22997.823996 eV Total energy + Delta-G solvation = -4456.228893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.14160 -50.03684 -42.06387 -40.70414 -39.59452 -37.73653 -36.73991 -34.94064 -33.50856 -32.49859 -31.22890 -29.63102 -27.70670 -26.53360 -25.77614 -24.50023 -23.72286 -22.28420 -20.50946 -19.78887 -18.85760 -18.72460 -18.53918 -18.02230 -17.86405 -17.54997 -17.24593 -16.84083 -16.72413 -16.48862 -16.38039 -15.87122 -15.49507 -15.34050 -14.88220 -14.78718 -14.43651 -14.24713 -14.11037 -13.77025 -13.74938 -13.55142 -13.35997 -13.16136 -13.02693 -12.85103 -12.73878 -12.64517 -12.54134 -12.24484 -12.03552 -11.82690 -11.74243 -10.67702 -10.66577 -10.57187 -9.83544 -9.55333 -8.26031 -6.40706 -0.82029 -0.22848 1.02253 1.15486 1.34954 1.37879 1.47810 1.57368 2.20294 2.23684 2.39046 2.83436 2.89674 3.04006 3.25388 3.34052 3.47010 3.66915 3.74848 3.78180 3.89732 4.29864 4.33781 4.47090 4.57235 4.60743 4.66322 4.73541 4.79763 4.83857 4.87739 4.92191 5.05833 5.08526 5.18687 5.48144 5.50504 5.75096 6.00922 6.32463 6.56149 6.67791 7.16302 7.32776 8.81319 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.003026 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.560377 B = 9251.637373 C = 9924.070482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 H 0.117 0.883 4 O -0.335 6.335 5 C 0.506 3.494 6 O -0.510 6.510 7 C -0.154 4.154 8 C -0.076 4.076 9 C 0.074 3.926 10 F -0.134 7.134 11 C -0.063 4.063 12 C -0.118 4.118 13 C 0.144 3.856 14 F -0.122 7.122 15 C 0.500 3.500 16 O -0.577 6.577 17 N -0.598 5.598 18 C 0.067 3.933 19 C 0.261 3.739 20 C -0.549 4.549 21 H 0.051 0.949 22 C 0.011 3.989 23 N -0.925 5.925 24 Si 0.967 3.033 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.276 1.276 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.149 0.851 32 H 0.196 0.804 33 H 0.197 0.803 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.035 0.965 38 H 0.002 0.998 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.511 4.850 -25.244 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.134 0.866 4 O -0.251 6.251 5 C 0.352 3.648 6 O -0.400 6.400 7 C -0.156 4.156 8 C -0.095 4.095 9 C 0.054 3.946 10 F -0.113 7.113 11 C -0.081 4.081 12 C -0.136 4.136 13 C 0.124 3.876 14 F -0.100 7.100 15 C 0.287 3.713 16 O -0.457 6.457 17 N -0.330 5.330 18 C -0.074 4.074 19 C 0.140 3.860 20 C -0.587 4.587 21 H 0.069 0.931 22 C -0.189 4.189 23 N -0.565 5.565 24 Si 0.791 3.209 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.201 1.201 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.167 0.833 32 H 0.213 0.787 33 H 0.214 0.786 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.053 0.947 38 H 0.020 0.980 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.267 4.569 -25.052 26.005 hybrid contribution 0.852 0.021 1.109 1.399 sum -4.415 4.590 -23.943 24.776 Atomic orbital electron populations 1.22305 0.88928 1.04610 1.06042 1.22627 0.98064 0.96743 0.80443 0.86570 1.86637 1.77028 1.41589 1.19811 1.21221 0.74493 0.84986 0.84146 1.90859 1.48777 1.15924 1.84468 1.18906 1.10847 0.94526 0.91325 1.21382 0.95797 0.93171 0.99132 1.17657 1.03224 0.78615 0.95068 1.91563 1.91995 1.30739 1.96957 1.21722 0.95352 0.92595 0.98437 1.21385 0.99649 0.95289 0.97246 1.18004 0.98109 0.77706 0.93805 1.91597 1.91168 1.30419 1.96863 1.20566 0.80184 0.85439 0.85108 1.90664 1.42224 1.26064 1.86732 1.48049 1.54049 1.25334 1.05592 1.22214 0.96594 0.84489 1.04132 1.18856 0.93858 0.91826 0.81484 1.21693 1.02279 1.23201 1.11560 0.93077 1.25821 1.02337 0.94884 0.95832 1.70037 1.39895 1.28890 1.17638 0.85430 0.78789 0.78422 0.78263 1.18616 1.20415 1.20121 0.89387 0.91150 0.87073 0.83306 0.78699 0.78621 0.89535 0.90580 0.89506 0.94730 0.97987 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.28 71.98 0.67 -3.25 16 2 C 0.08 2.62 2.17 29.85 0.06 2.69 16 3 H 0.12 3.63 6.15 -2.39 -0.01 3.62 16 4 O -0.33 -11.56 8.67 -50.03 -0.43 -12.00 16 5 C 0.51 15.66 7.87 70.28 0.55 16.21 16 6 O -0.51 -17.01 14.60 19.89 0.29 -16.72 16 7 C -0.15 -3.76 5.88 -20.07 -0.12 -3.88 16 8 C -0.08 -1.68 9.59 22.58 0.22 -1.46 16 9 C 0.07 1.23 7.29 22.33 0.16 1.40 16 10 F -0.13 -2.53 17.26 44.97 0.78 -1.76 16 11 C -0.06 -0.57 10.01 22.36 0.22 -0.35 16 12 C -0.12 -1.18 10.01 22.27 0.22 -0.96 16 13 C 0.14 2.81 7.28 22.68 0.17 2.97 16 14 F -0.12 -2.88 15.55 44.97 0.70 -2.18 16 15 C 0.50 21.92 7.10 87.66 0.62 22.54 16 16 O -0.58 -31.35 16.09 15.73 0.25 -31.10 16 17 N -0.60 -25.55 2.86 -851.11 -2.43 -27.99 16 18 C 0.07 1.97 8.92 127.77 1.14 3.11 16 19 C 0.26 14.02 5.16 85.63 0.44 14.47 16 20 C -0.55 -31.91 9.39 25.60 0.24 -31.67 16 21 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 22 C 0.01 0.62 5.46 84.65 0.46 1.08 16 23 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 24 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.11 2.20 5.12 -2.39 -0.01 2.18 16 31 H 0.15 3.73 7.61 -2.91 -0.02 3.71 16 32 H 0.20 0.24 8.06 -2.91 -0.02 0.22 16 33 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.09 1.95 7.02 -2.39 -0.02 1.93 16 35 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 36 H 0.09 2.06 6.08 -2.39 -0.01 2.05 16 37 H 0.03 1.85 8.07 -2.39 -0.02 1.83 16 38 H 0.00 0.12 7.42 -2.39 -0.02 0.11 16 39 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -80.39 348.64 7.63 -72.76 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.11 Total: 4.35 kcal Atomic # 6 Polarization: 17.83 SS G_CDS: 5.07 Total: 22.89 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -2.15 Total: -83.48 kcal Atomic # 8 Polarization: -59.93 SS G_CDS: 0.11 Total: -59.82 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 1.48 Total: -3.94 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -80.39 7.63 -72.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729285657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.386 kcal (2) G-P(sol) polarization free energy of solvation -80.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds