Wall clock time and date at job start Tue Mar 31 2020 15:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 F 1.39911 * 109.46994 * 299.99601 * 16 14 12 18 18 F 1.39895 * 109.47577 * 59.99705 * 16 14 12 19 19 O 1.42903 * 109.47132 * 180.02562 * 16 14 12 20 20 C 1.35666 * 116.99609 * 179.97438 * 19 16 14 21 21 C 1.39075 * 119.88769 * 359.72485 * 20 19 16 22 22 C 1.37126 * 120.11264 * 179.72004 * 21 20 19 23 23 C 1.40041 * 119.88217 * 0.57704 * 22 21 20 24 24 C 1.46859 * 120.11234 * 179.67918 * 23 22 21 25 25 O 1.21290 * 119.99906 * 180.02562 * 24 23 22 26 26 C 1.40041 * 119.77231 * 359.69399 * 23 22 21 27 27 C 1.37120 * 119.88251 * 0.02562 * 26 23 22 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 1.07998 * 119.94189 * 0.02562 * 21 20 19 36 36 H 1.07997 * 120.05430 * 180.27293 * 22 21 20 37 37 H 1.08003 * 120.00058 * 0.02562 * 24 23 22 38 38 H 1.07991 * 120.05617 * 179.97438 * 26 23 22 39 39 H 1.08000 * 119.93996 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 9 2.2080 -1.1860 4.0753 18 9 4.0734 -1.8448 2.9326 19 8 4.0892 0.1526 4.0918 20 6 4.6211 -0.3333 5.2414 21 6 4.3778 -1.6506 5.6151 22 6 4.9178 -2.1482 6.7731 23 6 5.7056 -1.3238 7.5861 24 6 6.2807 -1.8494 8.8310 25 8 6.9623 -1.1334 9.5338 26 6 5.9429 0.0036 7.2080 27 6 5.4029 0.4896 6.0451 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 3.7665 -2.2842 4.9896 36 1 4.7319 -3.1726 7.0602 37 1 6.0967 -2.8734 9.1207 38 1 6.5493 0.6435 7.8317 39 1 5.5849 1.5133 5.7529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731631172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:38 Heat of formation + Delta-G solvation = -164.303572 kcal Electronic energy + Delta-G solvation = -28067.576229 eV Core-core repulsion = 23612.554485 eV Total energy + Delta-G solvation = -4455.021744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.69904 -47.60046 -40.52195 -39.46522 -39.10703 -37.35856 -35.75903 -33.07290 -31.68206 -30.98922 -29.88469 -27.51182 -26.38142 -25.37024 -24.60756 -23.48350 -21.96020 -21.15508 -19.74957 -19.25431 -18.41245 -17.62458 -17.34232 -16.82789 -16.43098 -16.01035 -15.74575 -15.16050 -15.03722 -14.73504 -14.65359 -14.52658 -14.34118 -14.22483 -14.04669 -13.87777 -13.68868 -13.39410 -13.11550 -12.81331 -12.68222 -12.58807 -12.15376 -11.73657 -11.67912 -11.34519 -11.21277 -10.96017 -10.90757 -10.44186 -10.31315 -10.14296 -9.63680 -9.50133 -9.38569 -8.80198 -8.58079 -8.03288 -6.21808 -4.31239 0.28411 0.98145 1.86139 2.08169 2.45270 3.08921 3.21198 3.26721 3.28102 3.37936 3.41497 3.92222 4.14056 4.28762 4.35540 4.45770 4.58916 4.74482 4.89540 5.06598 5.10113 5.18127 5.42244 5.57461 5.69006 5.82758 5.82967 5.97078 6.10231 6.16175 6.51438 6.59527 6.68227 6.80532 7.01302 7.09108 7.14214 7.52460 7.76538 7.90060 8.10907 8.23080 8.71524 9.35536 10.83719 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.002726 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.023220 B =10267.219580 C =10312.884218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.259 3.741 3 H 0.069 0.931 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.559 5.559 13 C 0.063 3.937 14 C 0.500 3.500 15 O -0.489 6.489 16 C 0.429 3.571 17 F -0.178 7.178 18 F -0.176 7.176 19 O -0.282 6.282 20 C 0.148 3.852 21 C -0.211 4.211 22 C -0.026 4.026 23 C -0.230 4.230 24 C 0.388 3.612 25 O -0.467 6.467 26 C -0.023 4.023 27 C -0.148 4.148 28 H 0.016 0.984 29 H 0.100 0.900 30 H 0.035 0.965 31 H 0.267 0.733 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.105 0.895 38 H 0.143 0.857 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.268 -8.027 16.951 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.160 3.840 3 H 0.086 0.914 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.210 1.210 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.291 5.291 13 C -0.080 4.080 14 C 0.278 3.722 15 O -0.363 6.363 16 C 0.352 3.648 17 F -0.159 7.159 18 F -0.157 7.157 19 O -0.198 6.198 20 C 0.104 3.896 21 C -0.230 4.230 22 C -0.044 4.044 23 C -0.231 4.231 24 C 0.247 3.753 25 O -0.341 6.341 26 C -0.041 4.041 27 C -0.167 4.167 28 H 0.035 0.965 29 H 0.118 0.882 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.121 0.879 38 H 0.161 0.839 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.672 -6.740 16.950 18.829 hybrid contribution 0.091 -1.077 -0.920 1.420 sum 4.764 -7.817 16.029 18.459 Atomic orbital electron populations 1.22134 0.97253 0.99921 1.01436 1.19252 0.91483 0.94546 0.78692 0.91353 1.21202 1.32648 1.13448 0.89847 0.91927 1.24886 0.94715 0.94923 0.99047 1.69854 1.35809 1.22366 1.24267 0.86469 0.79329 0.79545 0.81585 1.21045 1.20090 1.20090 1.48356 1.46113 1.12335 1.22258 1.22014 1.03112 0.82125 1.00759 1.19253 0.82481 0.87563 0.82896 1.90794 1.56397 1.15145 1.73926 1.22511 0.76594 0.78114 0.87582 1.93089 1.55429 1.89796 1.77628 1.93147 1.75484 1.55801 1.91279 1.86719 1.62423 1.38326 1.32296 1.19465 0.92257 0.92900 0.85017 1.21501 1.05936 0.94795 1.00746 1.21047 0.92170 0.99332 0.91844 1.20914 1.05910 0.96001 1.00256 1.23905 0.75790 0.92890 0.82698 1.90533 1.30430 1.61762 1.51345 1.21136 0.94614 0.94361 0.93962 1.20384 1.00340 1.01012 0.94941 0.96529 0.88182 0.94632 0.92338 0.91848 0.92062 0.89371 0.84150 0.84237 0.87902 0.83880 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.95 37.16 0.33 -3.00 16 2 C 0.26 6.25 2.64 -69.09 -0.18 6.07 16 3 H 0.07 1.90 6.90 -51.92 -0.36 1.54 16 4 C -0.53 -13.69 8.37 -34.44 -0.29 -13.98 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -23.89 11.32 55.43 0.63 -23.26 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.20 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.56 -11.49 2.75 -175.27 -0.48 -11.97 16 13 C 0.06 1.02 8.84 59.85 0.53 1.55 16 14 C 0.50 10.29 7.24 -10.98 -0.08 10.21 16 15 O -0.49 -11.68 15.83 -14.35 -0.23 -11.91 16 16 C 0.43 7.14 1.43 36.01 0.05 7.19 16 17 F -0.18 -2.62 13.21 2.25 0.03 -2.59 16 18 F -0.18 -2.71 14.35 2.25 0.03 -2.68 16 19 O -0.28 -4.68 9.59 -38.61 -0.37 -5.05 16 20 C 0.15 2.01 6.50 -38.96 -0.25 1.76 16 21 C -0.21 -2.41 8.21 -39.67 -0.33 -2.74 16 22 C -0.03 -0.22 9.77 -39.31 -0.38 -0.60 16 23 C -0.23 -2.09 5.87 -105.06 -0.62 -2.70 16 24 C 0.39 3.05 11.44 34.22 0.39 3.44 16 25 O -0.47 -5.43 17.16 5.55 0.10 -5.33 16 26 C -0.02 -0.23 9.57 -39.31 -0.38 -0.60 16 27 C -0.15 -1.71 9.95 -39.67 -0.39 -2.11 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 30 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 31 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.84 5.29 -51.93 -0.27 0.56 16 34 H 0.09 1.38 6.43 -51.93 -0.33 1.05 16 35 H 0.14 1.59 5.07 -52.49 -0.27 1.32 16 36 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.10 0.39 8.06 -52.48 -0.42 -0.04 16 38 H 0.14 1.29 7.64 -52.49 -0.40 0.88 16 39 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -30.51 339.58 -5.83 -36.34 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -3.94 Total: -0.01 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.69 Total: 6.15 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.14 Total: -35.23 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.50 Total: -22.29 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.06 Total: -5.27 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.51 -5.83 -36.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731631172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.965 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds