Wall clock time and date at job start Tue Mar 31 2020 15:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 F 1.39911 * 109.46994 * 299.99601 * 16 14 12 18 18 F 1.39895 * 109.47577 * 59.99705 * 16 14 12 19 19 O 1.42903 * 109.47132 * 180.02562 * 16 14 12 20 20 C 1.35666 * 116.99609 * 179.97438 * 19 16 14 21 21 C 1.39075 * 119.88769 * 359.72485 * 20 19 16 22 22 C 1.37126 * 120.11264 * 179.72004 * 21 20 19 23 23 C 1.40041 * 119.88217 * 0.57704 * 22 21 20 24 24 C 1.46859 * 120.11234 * 179.67918 * 23 22 21 25 25 O 1.21290 * 119.99906 * 180.02562 * 24 23 22 26 26 C 1.40041 * 119.77231 * 359.69399 * 23 22 21 27 27 C 1.37120 * 119.88251 * 0.02562 * 26 23 22 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 1.07998 * 119.94189 * 0.02562 * 21 20 19 36 36 H 1.07997 * 120.05430 * 180.27293 * 22 21 20 37 37 H 1.08003 * 120.00058 * 0.02562 * 24 23 22 38 38 H 1.07991 * 120.05617 * 179.97438 * 26 23 22 39 39 H 1.08000 * 119.93996 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 9 2.2080 -1.1860 4.0753 18 9 4.0734 -1.8448 2.9326 19 8 4.0892 0.1526 4.0918 20 6 4.6211 -0.3333 5.2414 21 6 4.3778 -1.6506 5.6151 22 6 4.9178 -2.1482 6.7731 23 6 5.7056 -1.3238 7.5861 24 6 6.2807 -1.8494 8.8310 25 8 6.9623 -1.1334 9.5338 26 6 5.9429 0.0036 7.2080 27 6 5.4029 0.4896 6.0451 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 3.7665 -2.2842 4.9896 36 1 4.7319 -3.1726 7.0602 37 1 6.0967 -2.8734 9.1207 38 1 6.5493 0.6435 7.8317 39 1 5.5849 1.5133 5.7529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731631172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:37 Heat of formation + Delta-G solvation = -182.016372 kcal Electronic energy + Delta-G solvation = -28068.344314 eV Core-core repulsion = 23612.554485 eV Total energy + Delta-G solvation = -4455.789829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.97103 -48.85755 -41.45973 -40.99975 -40.04893 -38.31357 -37.46212 -34.95384 -32.48574 -32.01275 -31.54998 -28.84632 -27.81137 -27.32042 -25.53440 -24.40377 -23.32087 -22.12819 -21.19784 -20.49007 -19.69747 -19.07661 -18.45193 -18.18060 -17.78641 -17.47184 -16.67777 -16.66939 -16.49769 -15.88623 -15.80937 -15.59753 -15.41554 -15.32104 -15.21071 -15.07835 -14.83068 -14.59948 -14.40219 -14.30984 -14.22015 -13.63523 -13.54257 -13.09590 -13.03116 -13.00883 -12.79645 -12.71087 -12.24201 -12.18618 -12.14641 -11.31330 -11.24915 -10.80906 -10.56627 -10.28433 -9.73354 -9.68668 -8.19520 -6.36438 -0.50044 0.20117 0.55540 0.84080 1.39633 1.43898 1.45618 1.53067 1.77249 1.98821 2.39844 2.64642 2.73265 3.10071 3.27815 3.34898 3.53641 3.63774 3.98138 4.12872 4.19384 4.28248 4.51090 4.51259 4.63915 4.81258 4.82987 4.88087 4.91769 4.92675 5.03999 5.21121 5.26107 5.30032 5.37126 5.57174 5.78201 5.88543 6.02148 6.28606 6.50034 6.55652 6.75308 7.34214 8.85245 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.002726 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.023220 B =10267.219580 C =10312.884218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.261 3.739 3 H 0.020 0.980 4 C -0.545 4.545 5 H 0.065 0.935 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.966 3.034 9 H -0.284 1.284 10 H -0.278 1.278 11 H -0.261 1.261 12 N -0.563 5.563 13 C 0.058 3.942 14 C 0.489 3.511 15 O -0.536 6.536 16 C 0.451 3.549 17 F -0.164 7.164 18 F -0.167 7.167 19 O -0.305 6.305 20 C 0.110 3.890 21 C -0.219 4.219 22 C -0.009 4.009 23 C -0.228 4.228 24 C 0.399 3.601 25 O -0.507 6.507 26 C -0.030 4.030 27 C -0.158 4.158 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.267 0.733 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.143 0.857 36 H 0.187 0.813 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.542 -11.366 18.539 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.161 3.839 3 H 0.038 0.962 4 C -0.583 4.583 5 H 0.083 0.917 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.791 3.209 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.185 1.185 12 N -0.294 5.294 13 C -0.083 4.083 14 C 0.269 3.731 15 O -0.413 6.413 16 C 0.373 3.627 17 F -0.146 7.146 18 F -0.148 7.148 19 O -0.222 6.222 20 C 0.067 3.933 21 C -0.238 4.238 22 C -0.026 4.026 23 C -0.229 4.229 24 C 0.261 3.739 25 O -0.383 6.383 26 C -0.048 4.048 27 C -0.176 4.176 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.160 0.840 36 H 0.204 0.796 37 H 0.177 0.823 38 H 0.167 0.833 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.937 -10.131 18.564 21.718 hybrid contribution 0.051 -0.041 -1.298 1.300 sum 4.988 -10.172 17.266 20.651 Atomic orbital electron populations 1.21934 0.95870 1.00932 1.00714 1.18897 0.92485 0.92485 0.80055 0.96182 1.21459 1.32692 1.13523 0.90620 0.91674 1.25691 0.94858 0.95555 1.01902 1.69991 1.36758 1.23581 1.24825 0.85487 0.78386 0.79059 0.77985 1.20918 1.20347 1.18540 1.48327 1.45847 1.13902 1.21295 1.22284 1.03690 0.79485 1.02844 1.19831 0.81915 0.87330 0.84011 1.90760 1.57896 1.17251 1.75387 1.21470 0.77090 0.77859 0.86277 1.93111 1.54888 1.89536 1.77032 1.93164 1.75257 1.55086 1.91293 1.86668 1.63004 1.38755 1.33778 1.19829 0.94167 0.94569 0.84742 1.21660 1.06402 0.93784 1.01948 1.21486 0.90078 1.01121 0.89960 1.21323 1.05192 0.95440 1.00973 1.24601 0.73859 0.94419 0.81027 1.90544 1.32272 1.63204 1.52301 1.21320 0.94523 0.95523 0.93400 1.20484 1.00571 1.01098 0.95450 0.95530 0.90591 0.92613 0.92361 0.90964 0.89287 0.88621 0.83981 0.79555 0.82251 0.83282 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.15 8.95 71.98 0.64 -5.50 16 2 C 0.26 12.96 2.64 44.24 0.12 13.08 16 3 H 0.02 1.19 6.90 -2.38 -0.02 1.17 16 4 C -0.54 -28.24 8.37 25.60 0.21 -28.02 16 5 H 0.07 3.26 7.65 -2.91 -0.02 3.24 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -50.38 11.32 21.45 0.24 -50.13 16 8 Si 0.97 41.33 29.54 68.60 2.03 43.36 16 9 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 12 N -0.56 -23.28 2.75 -826.81 -2.28 -25.56 16 13 C 0.06 1.79 8.84 127.77 1.13 2.92 16 14 C 0.49 20.63 7.24 87.66 0.63 21.26 16 15 O -0.54 -27.07 15.83 16.01 0.25 -26.82 16 16 C 0.45 14.87 1.43 71.24 0.10 14.97 16 17 F -0.16 -4.60 13.21 44.97 0.59 -4.01 16 18 F -0.17 -4.95 14.35 44.97 0.65 -4.30 16 19 O -0.31 -10.38 9.59 -70.79 -0.68 -11.06 16 20 C 0.11 2.96 6.50 22.67 0.15 3.11 16 21 C -0.22 -4.53 8.21 22.21 0.18 -4.35 16 22 C -0.01 -0.11 9.77 22.45 0.22 0.10 16 23 C -0.23 -3.44 5.87 -20.15 -0.12 -3.56 16 24 C 0.40 4.68 11.44 70.08 0.80 5.49 16 25 O -0.51 -10.59 17.16 -3.06 -0.05 -10.65 16 26 C -0.03 -0.57 9.57 22.44 0.21 -0.35 16 27 C -0.16 -3.68 9.95 22.21 0.22 -3.46 16 28 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 3.83 6.07 -2.39 -0.01 3.81 16 30 H 0.05 2.23 6.66 -2.39 -0.02 2.22 16 31 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.21 5.29 -2.38 -0.01 2.20 16 34 H 0.10 2.79 6.43 -2.39 -0.02 2.78 16 35 H 0.14 2.84 5.07 -2.91 -0.01 2.82 16 36 H 0.19 0.65 8.06 -2.91 -0.02 0.63 16 37 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 38 H 0.15 2.60 7.64 -2.92 -0.02 2.58 16 39 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -69.88 339.58 6.82 -63.06 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.11 Total: 8.89 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 4.96 Total: 17.21 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.03 Total: -75.69 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.48 Total: -48.52 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 1.24 Total: -8.31 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -69.88 6.82 -63.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731631172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.953 kcal (2) G-P(sol) polarization free energy of solvation -69.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds