Wall clock time and date at job start Tue Mar 31 2020 15:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36433 * 126.32230 * 2 1 4 4 O 1.35272 * 125.01981 * 359.97438 * 3 2 1 5 5 N 1.30718 * 109.96565 * 180.24534 * 3 2 1 6 6 C 1.35986 * 109.53976 * 359.62968 * 5 3 2 7 7 C 1.39342 * 133.40004 * 180.08435 * 6 5 3 8 8 C 1.39215 * 119.51550 * 180.30758 * 7 6 5 9 9 C 1.47646 * 119.91963 * 179.97438 * 8 7 6 10 10 O 1.21610 * 119.99966 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00186 * 179.97438 * 9 8 7 12 12 C 1.40533 * 120.00067 * 180.02562 * 11 9 8 13 13 C 1.40667 * 126.08489 * 359.69403 * 12 11 9 14 14 N 1.30911 * 108.38746 * 179.81324 * 13 12 11 15 15 N 1.40068 * 108.41035 * 0.44506 * 14 13 12 16 16 C 1.37312 * 126.06477 * 179.71613 * 15 14 13 17 17 H 1.08006 * 119.99652 * 174.12536 * 16 15 14 18 18 C 1.38993 * 120.00432 * 354.12653 * 16 15 14 19 19 N 1.31290 * 119.99593 * 5.93174 * 18 16 15 20 20 Si 1.86795 * 119.99971 * 185.93775 * 18 16 15 21 21 H 1.48499 * 109.47414 * 94.97809 * 20 18 16 22 22 H 1.48504 * 109.46915 * 214.97603 * 20 18 16 23 23 H 1.48504 * 109.47261 * 334.97434 * 20 18 16 24 24 C 1.35699 * 126.08974 * 180.02562 * 12 11 9 25 25 C 1.40084 * 120.16745 * 359.97438 * 8 7 6 26 26 C 1.36521 * 120.43295 * 0.04163 * 25 8 7 27 27 C 1.38135 * 126.31634 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46781 * 89.97861 * 1 2 3 29 29 H 1.09000 * 109.47242 * 209.97117 * 1 2 3 30 30 H 1.08992 * 109.46833 * 329.97673 * 1 2 3 31 31 H 0.96702 * 114.00286 * 89.99282 * 4 3 2 32 32 H 1.08003 * 120.24229 * 0.32580 * 7 6 5 33 33 H 0.96998 * 120.00317 * 0.02562 * 11 9 8 34 34 H 1.08000 * 125.80386 * 359.97438 * 13 12 11 35 35 H 0.97002 * 119.99694 * 180.02562 * 19 18 16 36 36 H 1.08002 * 126.24166 * 359.97438 * 24 12 11 37 37 H 1.07994 * 119.78400 * 180.02562 * 25 8 7 38 38 H 1.08001 * 119.91185 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2732 1.0992 0.0000 4 8 1.8404 2.3809 -0.0005 5 7 3.5275 0.7311 -0.0053 6 6 3.6030 -0.6266 -0.0007 7 6 4.6670 -1.5263 -0.0015 8 6 4.4085 -2.8943 -0.0021 9 6 5.5292 -3.8555 -0.0036 10 8 6.6764 -3.4520 -0.0037 11 7 5.2809 -5.1802 -0.0036 12 6 6.3476 -6.0951 -0.0045 13 6 7.7166 -5.7716 -0.0113 14 7 8.4042 -6.8855 -0.0058 15 7 7.5056 -7.9600 -0.0055 16 6 7.8385 -9.2922 -0.0060 17 1 7.0667 -10.0417 0.0900 18 6 9.1686 -9.6762 -0.1300 19 7 10.1167 -8.7681 -0.1294 20 14 9.6069 -11.4842 -0.2975 21 1 9.7418 -11.8298 -1.7354 22 1 10.8924 -11.7483 0.3977 23 1 8.5353 -12.3120 0.3122 24 6 6.2404 -7.4478 -0.0051 25 6 3.0878 -3.3611 -0.0014 26 6 2.0435 -2.4817 -0.0009 27 6 2.2831 -1.1130 -0.0005 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5142 31 1 1.7142 2.7538 0.8828 32 1 5.6848 -1.1651 -0.0014 33 1 4.3659 -5.5021 -0.0031 34 1 8.1300 -4.7739 -0.0173 35 1 11.0449 -9.0360 -0.2163 36 1 5.3217 -8.0155 -0.0047 37 1 2.8944 -4.4236 -0.0014 38 1 1.0285 -2.8509 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747434487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:54 Heat of formation + Delta-G solvation = 102.138180 kcal Electronic energy + Delta-G solvation = -25704.838056 eV Core-core repulsion = 21744.352031 eV Total energy + Delta-G solvation = -3960.486025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.50348 -39.99440 -38.97180 -38.08098 -36.41830 -34.71558 -34.21227 -33.13510 -30.84578 -30.22732 -29.43620 -27.79306 -27.31295 -24.99887 -23.66214 -22.99989 -21.22878 -21.01515 -20.46057 -19.44656 -18.94679 -18.02334 -17.44921 -17.16656 -16.85616 -15.83330 -15.41730 -15.36941 -14.97326 -14.54601 -14.45068 -14.32175 -13.99532 -13.61202 -13.55226 -13.31710 -13.10847 -13.07867 -12.81368 -12.50294 -11.66657 -11.64120 -11.59755 -11.38551 -11.24981 -10.91061 -10.74690 -10.51174 -10.27308 -10.12693 -9.24206 -9.14128 -8.77277 -8.58761 -8.39231 -8.02261 -6.66125 -6.53866 -4.20004 0.62620 0.87651 1.84744 2.25864 2.91263 3.06202 3.06912 3.12095 3.22828 3.59435 3.61608 3.89119 3.95803 4.07460 4.19199 4.51073 4.57558 4.65985 4.73858 4.89558 4.95554 5.01439 5.03704 5.09714 5.17032 5.43833 5.79317 5.97742 6.13188 6.18220 6.26013 6.28032 6.41863 6.56270 6.93846 6.99544 7.09334 7.15827 7.26959 7.44048 7.88860 8.21017 8.30949 8.66053 8.88203 9.40889 9.70128 10.42399 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.045245 B = 0.002078 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.699057 B =13471.122123 C =14067.583960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.496 5.496 3 C 0.443 3.557 4 O -0.441 6.441 5 N -0.476 5.476 6 C 0.048 3.952 7 C 0.003 3.997 8 C -0.125 4.125 9 C 0.544 3.456 10 O -0.531 6.531 11 N -0.616 5.616 12 C -0.059 4.059 13 C -0.031 4.031 14 N -0.261 5.261 15 N -0.143 5.143 16 C -0.323 4.323 17 H 0.116 0.884 18 C 0.046 3.954 19 N -0.769 5.769 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.083 4.083 25 C -0.069 4.069 26 C -0.115 4.115 27 C 0.070 3.930 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.408 0.592 32 H 0.149 0.851 33 H 0.396 0.604 34 H 0.177 0.823 35 H 0.275 0.725 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.436 13.745 1.833 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.199 5.199 3 C 0.140 3.860 4 O -0.242 6.242 5 N -0.206 5.206 6 C -0.069 4.069 7 C -0.017 4.017 8 C -0.131 4.131 9 C 0.330 3.670 10 O -0.409 6.409 11 N -0.259 5.259 12 C -0.165 4.165 13 C -0.206 4.206 14 N -0.092 5.092 15 N 0.090 4.910 16 C -0.456 4.456 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.395 5.395 20 Si 0.758 3.242 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.234 4.234 25 C -0.089 4.089 26 C -0.135 4.135 27 C -0.039 4.039 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.266 0.734 32 H 0.166 0.834 33 H 0.230 0.770 34 H 0.194 0.806 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.154 0.846 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.638 14.145 1.224 24.232 hybrid contribution -2.234 -0.819 0.393 2.412 sum -21.872 13.325 1.617 25.662 Atomic orbital electron populations 1.21973 0.75931 1.04581 1.03851 1.45553 1.07485 1.05246 1.61587 1.20355 0.84027 0.81208 1.00368 1.84824 1.86408 1.18545 1.34463 1.70717 1.15366 1.11530 1.22953 1.18619 0.92097 0.89161 1.07070 1.20399 0.98519 0.89791 0.93026 1.19720 0.93376 0.93343 1.06663 1.17828 0.88301 0.81834 0.78992 1.90689 1.21679 1.78294 1.50234 1.42370 1.08136 1.04465 1.70898 1.17249 0.87806 0.87641 1.23783 1.24154 0.90039 0.98785 1.07652 1.78258 1.14153 0.91126 1.25665 1.44547 1.01840 1.05503 1.39159 1.19865 0.94369 0.78444 1.52893 0.86623 1.25647 0.95363 1.00573 0.95541 1.70224 1.00652 1.33580 1.35061 0.85818 0.78775 0.80638 0.78940 1.19662 1.20129 1.18807 1.21251 0.90050 0.92127 1.19971 1.20797 0.90971 0.99667 0.97481 1.19511 0.99910 0.88195 1.05932 1.18778 0.90732 0.88906 1.05486 0.90466 0.89390 0.89495 0.73399 0.83359 0.77016 0.80590 0.91467 0.83677 0.84552 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.31 11.11 59.85 0.66 0.98 16 2 N -0.50 -4.37 3.22 -123.31 -0.40 -4.76 16 3 C 0.44 4.61 8.98 -88.91 -0.80 3.82 16 4 O -0.44 -3.13 13.51 -17.51 -0.24 -3.36 16 5 N -0.48 -6.58 11.31 -12.26 -0.14 -6.72 16 6 C 0.05 0.66 7.21 -84.70 -0.61 0.05 16 7 C 0.00 0.05 9.64 -38.81 -0.37 -0.33 16 8 C -0.13 -1.78 5.87 -105.00 -0.62 -2.39 16 9 C 0.54 9.90 7.73 -12.42 -0.10 9.80 16 10 O -0.53 -11.75 13.47 5.27 0.07 -11.68 16 11 N -0.62 -11.00 5.41 -10.90 -0.06 -11.05 16 12 C -0.06 -1.37 6.90 -83.86 -0.58 -1.95 16 13 C -0.03 -0.82 10.85 -17.03 -0.18 -1.00 16 14 N -0.26 -7.66 10.42 30.80 0.32 -7.34 16 15 N -0.14 -3.93 3.74 -11.41 -0.04 -3.98 16 16 C -0.32 -8.56 10.24 -14.82 -0.15 -8.71 16 17 H 0.12 2.73 7.84 -52.48 -0.41 2.31 16 18 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 19 N -0.77 -21.62 11.84 55.50 0.66 -20.96 16 20 Si 0.93 18.97 29.56 -169.99 -5.02 13.95 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 25 C -0.07 -0.72 9.47 -39.51 -0.37 -1.10 16 26 C -0.11 -1.05 9.96 -39.94 -0.40 -1.45 16 27 C 0.07 0.77 6.87 -83.84 -0.58 0.20 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.17 8.12 -51.93 -0.42 -0.25 16 31 H 0.41 0.62 9.06 45.56 0.41 1.04 16 32 H 0.15 2.29 7.63 -52.48 -0.40 1.89 16 33 H 0.40 5.28 6.82 -40.82 -0.28 5.01 16 34 H 0.18 4.67 5.91 -52.49 -0.31 4.36 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 37 H 0.14 1.07 6.36 -52.49 -0.33 0.73 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -37.98 338.08 -6.70 -44.69 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -2.57 Total: 9.25 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -4.38 Total: -3.12 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.34 Total: -54.81 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.17 Total: -15.05 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.98 -6.70 -44.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747434487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.825 kcal (2) G-P(sol) polarization free energy of solvation -37.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds