Wall clock time and date at job start Tue Mar 31 2020 15:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36433 * 126.32230 * 2 1 4 4 O 1.35272 * 125.01981 * 359.97438 * 3 2 1 5 5 N 1.30718 * 109.96565 * 180.24534 * 3 2 1 6 6 C 1.35986 * 109.53976 * 359.62968 * 5 3 2 7 7 C 1.39342 * 133.40004 * 180.08435 * 6 5 3 8 8 C 1.39215 * 119.51550 * 180.30758 * 7 6 5 9 9 C 1.47646 * 119.91963 * 179.97438 * 8 7 6 10 10 O 1.21610 * 119.99966 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00186 * 179.97438 * 9 8 7 12 12 C 1.40533 * 120.00067 * 180.02562 * 11 9 8 13 13 C 1.40667 * 126.08489 * 359.69403 * 12 11 9 14 14 N 1.30911 * 108.38746 * 179.81324 * 13 12 11 15 15 N 1.40068 * 108.41035 * 0.44506 * 14 13 12 16 16 C 1.37312 * 126.06477 * 179.71613 * 15 14 13 17 17 H 1.08006 * 119.99652 * 174.12536 * 16 15 14 18 18 C 1.38993 * 120.00432 * 354.12653 * 16 15 14 19 19 N 1.31290 * 119.99593 * 5.93174 * 18 16 15 20 20 Si 1.86795 * 119.99971 * 185.93775 * 18 16 15 21 21 H 1.48499 * 109.47414 * 94.97809 * 20 18 16 22 22 H 1.48504 * 109.46915 * 214.97603 * 20 18 16 23 23 H 1.48504 * 109.47261 * 334.97434 * 20 18 16 24 24 C 1.35699 * 126.08974 * 180.02562 * 12 11 9 25 25 C 1.40084 * 120.16745 * 359.97438 * 8 7 6 26 26 C 1.36521 * 120.43295 * 0.04163 * 25 8 7 27 27 C 1.38135 * 126.31634 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46781 * 89.97861 * 1 2 3 29 29 H 1.09000 * 109.47242 * 209.97117 * 1 2 3 30 30 H 1.08992 * 109.46833 * 329.97673 * 1 2 3 31 31 H 0.96702 * 114.00286 * 89.99282 * 4 3 2 32 32 H 1.08003 * 120.24229 * 0.32580 * 7 6 5 33 33 H 0.96998 * 120.00317 * 0.02562 * 11 9 8 34 34 H 1.08000 * 125.80386 * 359.97438 * 13 12 11 35 35 H 0.97002 * 119.99694 * 180.02562 * 19 18 16 36 36 H 1.08002 * 126.24166 * 359.97438 * 24 12 11 37 37 H 1.07994 * 119.78400 * 180.02562 * 25 8 7 38 38 H 1.08001 * 119.91185 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2732 1.0992 0.0000 4 8 1.8404 2.3809 -0.0005 5 7 3.5275 0.7311 -0.0053 6 6 3.6030 -0.6266 -0.0007 7 6 4.6670 -1.5263 -0.0015 8 6 4.4085 -2.8943 -0.0021 9 6 5.5292 -3.8555 -0.0036 10 8 6.6764 -3.4520 -0.0037 11 7 5.2809 -5.1802 -0.0036 12 6 6.3476 -6.0951 -0.0045 13 6 7.7166 -5.7716 -0.0113 14 7 8.4042 -6.8855 -0.0058 15 7 7.5056 -7.9600 -0.0055 16 6 7.8385 -9.2922 -0.0060 17 1 7.0667 -10.0417 0.0900 18 6 9.1686 -9.6762 -0.1300 19 7 10.1167 -8.7681 -0.1294 20 14 9.6069 -11.4842 -0.2975 21 1 9.7418 -11.8298 -1.7354 22 1 10.8924 -11.7483 0.3977 23 1 8.5353 -12.3120 0.3122 24 6 6.2404 -7.4478 -0.0051 25 6 3.0878 -3.3611 -0.0014 26 6 2.0435 -2.4817 -0.0009 27 6 2.2831 -1.1130 -0.0005 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5142 31 1 1.7142 2.7538 0.8828 32 1 5.6848 -1.1651 -0.0014 33 1 4.3659 -5.5021 -0.0031 34 1 8.1300 -4.7739 -0.0173 35 1 11.0449 -9.0360 -0.2163 36 1 5.3217 -8.0155 -0.0047 37 1 2.8944 -4.4236 -0.0014 38 1 1.0285 -2.8509 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747434487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:53 Heat of formation + Delta-G solvation = 70.729209 kcal Electronic energy + Delta-G solvation = -25706.200051 eV Core-core repulsion = 21744.352031 eV Total energy + Delta-G solvation = -3961.848020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.30756 -41.72251 -40.46618 -38.96481 -37.31461 -35.98092 -35.39856 -34.94090 -32.27848 -31.67890 -30.58205 -29.27156 -28.03039 -26.80554 -24.84241 -23.84747 -22.87219 -22.04401 -21.82079 -21.20423 -19.67296 -19.44613 -18.73222 -18.21609 -17.68883 -17.37676 -16.92673 -16.65975 -16.13397 -15.92834 -15.57029 -15.27164 -15.06007 -15.04430 -14.97704 -14.76637 -14.12165 -13.96949 -13.47994 -13.46939 -13.35476 -13.26078 -12.95072 -12.77550 -12.45168 -12.43072 -12.04633 -11.83770 -11.49192 -11.12238 -11.00861 -10.84433 -10.74181 -10.07354 -9.47902 -9.25937 -8.48702 -8.44621 -6.21372 -0.28201 -0.05256 1.19182 1.29031 1.41866 1.49034 1.60268 1.67075 1.93281 2.02895 2.25308 2.48057 2.64413 2.90503 2.95231 3.11627 3.31023 3.73727 3.84590 3.92415 4.14071 4.21378 4.36361 4.43287 4.49033 4.60455 4.66621 4.71653 4.97299 5.04066 5.08778 5.20360 5.27591 5.30250 5.33160 5.47899 5.61075 5.69127 5.99153 6.34049 6.55057 6.62152 6.75272 6.76977 7.38525 7.50616 7.70904 8.54975 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.045245 B = 0.002078 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.699057 B =13471.122123 C =14067.583960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.486 5.486 3 C 0.456 3.544 4 O -0.440 6.440 5 N -0.531 5.531 6 C 0.022 3.978 7 C -0.021 4.021 8 C -0.134 4.134 9 C 0.543 3.457 10 O -0.580 6.580 11 N -0.604 5.604 12 C -0.044 4.044 13 C -0.061 4.061 14 N -0.312 5.312 15 N -0.169 5.169 16 C -0.353 4.353 17 H 0.144 0.856 18 C -0.009 4.009 19 N -0.826 5.826 20 Si 1.020 2.980 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.240 1.240 24 C -0.075 4.075 25 C -0.065 4.065 26 C -0.091 4.091 27 C 0.073 3.927 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.433 0.567 32 H 0.118 0.882 33 H 0.421 0.579 34 H 0.164 0.836 35 H 0.276 0.724 36 H 0.194 0.806 37 H 0.170 0.830 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.769 12.493 1.972 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.188 5.188 3 C 0.152 3.848 4 O -0.245 6.245 5 N -0.262 5.262 6 C -0.096 4.096 7 C -0.041 4.041 8 C -0.139 4.139 9 C 0.333 3.667 10 O -0.461 6.461 11 N -0.249 5.249 12 C -0.151 4.151 13 C -0.237 4.237 14 N -0.144 5.144 15 N 0.062 4.938 16 C -0.483 4.483 17 H 0.161 0.839 18 C -0.220 4.220 19 N -0.454 5.454 20 Si 0.839 3.161 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.163 1.163 24 C -0.225 4.225 25 C -0.086 4.086 26 C -0.111 4.111 27 C -0.037 4.037 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.296 0.704 32 H 0.136 0.864 33 H 0.260 0.740 34 H 0.181 0.819 35 H 0.085 0.915 36 H 0.211 0.789 37 H 0.188 0.812 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -25.088 12.929 1.387 28.258 hybrid contribution -0.799 -0.110 0.365 0.886 sum -25.887 12.819 1.751 28.941 Atomic orbital electron populations 1.22434 0.72580 1.06997 1.05223 1.45794 1.09173 1.03832 1.59975 1.20425 0.83660 0.82514 0.98220 1.84794 1.85954 1.17026 1.36719 1.70620 1.17948 1.12025 1.25655 1.18652 0.93268 0.89430 1.08217 1.20230 0.97885 0.90765 0.95255 1.19364 0.93690 0.91791 1.09105 1.18549 0.88801 0.82293 0.77097 1.90670 1.24232 1.79122 1.52030 1.42210 1.08177 1.03654 1.70877 1.17310 0.87765 0.88585 1.21396 1.24172 0.92226 0.97954 1.09305 1.78156 1.16332 0.92434 1.27487 1.44858 1.02826 1.05643 1.40439 1.20641 0.95688 0.78706 1.53312 0.83893 1.26921 0.94922 1.05933 0.94259 1.70416 1.01155 1.36572 1.37266 0.84565 0.78696 0.73927 0.78923 1.19262 1.20367 1.16289 1.22032 0.90459 0.92379 1.17632 1.21068 0.89089 1.01629 0.96764 1.19960 1.01683 0.86768 1.02719 1.19033 0.89855 0.90278 1.04576 0.89522 0.87067 0.87208 0.70428 0.86375 0.73977 0.81882 0.91477 0.78879 0.81246 0.80489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.20 11.11 127.77 1.42 1.62 16 2 N -0.49 -6.94 3.22 -654.91 -2.11 -9.04 16 3 C 0.46 8.70 8.98 179.75 1.61 10.32 16 4 O -0.44 -5.21 13.51 -85.56 -1.16 -6.36 16 5 N -0.53 -14.90 11.31 -306.54 -3.47 -18.37 16 6 C 0.02 0.60 7.21 39.36 0.28 0.89 16 7 C -0.02 -0.64 9.64 22.77 0.22 -0.42 16 8 C -0.13 -3.80 5.87 -20.11 -0.12 -3.91 16 9 C 0.54 20.33 7.73 86.73 0.67 21.00 16 10 O -0.58 -27.63 13.47 -4.06 -0.05 -27.69 16 11 N -0.60 -20.99 5.41 -306.67 -1.66 -22.65 16 12 C -0.04 -2.06 6.90 37.75 0.26 -1.80 16 13 C -0.06 -3.45 10.85 85.42 0.93 -2.53 16 14 N -0.31 -19.25 10.42 -56.45 -0.59 -19.83 16 15 N -0.17 -9.41 3.74 -190.00 -0.71 -10.12 16 16 C -0.35 -18.64 10.24 84.02 0.86 -17.78 16 17 H 0.14 6.47 7.84 -2.91 -0.02 6.44 16 18 C -0.01 -0.47 5.50 84.95 0.47 0.00 16 19 N -0.83 -48.49 11.84 21.66 0.26 -48.24 16 20 Si 1.02 38.79 29.56 68.60 2.03 40.82 16 21 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 23 H -0.24 -8.11 7.11 99.48 0.71 -7.41 16 24 C -0.07 -3.41 11.49 83.38 0.96 -2.45 16 25 C -0.07 -1.15 9.47 22.32 0.21 -0.94 16 26 C -0.09 -1.25 9.96 22.04 0.22 -1.03 16 27 C 0.07 1.42 6.87 38.91 0.27 1.68 16 28 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.11 -0.13 8.12 -2.39 -0.02 -0.15 16 31 H 0.43 0.15 9.06 -74.06 -0.67 -0.52 16 32 H 0.12 4.22 7.63 -2.91 -0.02 4.20 16 33 H 0.42 9.93 6.82 -92.71 -0.63 9.30 16 34 H 0.16 9.44 5.91 -2.91 -0.02 9.42 16 35 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.19 6.68 8.06 -2.91 -0.02 6.66 16 37 H 0.17 1.78 6.36 -2.91 -0.02 1.76 16 38 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -91.96 338.08 0.66 -91.30 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.14 Total: 25.54 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 8.26 Total: 4.64 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -8.28 Total: -128.26 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -1.21 Total: -34.05 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -91.96 0.66 -91.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747434487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.031 kcal (2) G-P(sol) polarization free energy of solvation -91.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds