Wall clock time and date at job start Tue Mar 31 2020 15:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46496 * 120.00223 * 270.00023 * 3 2 1 5 5 C 1.50697 * 109.47335 * 270.00056 * 4 3 2 6 6 H 1.07998 * 119.99876 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00362 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00086 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99901 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46965 * 90.00243 * 9 7 5 11 11 H 1.48501 * 109.47201 * 210.00295 * 9 7 5 12 12 H 1.48504 * 109.46922 * 330.00560 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 F 1.39900 * 109.47515 * 59.99807 * 15 13 3 17 17 F 1.39897 * 109.47274 * 299.99712 * 15 13 3 18 18 O 1.42905 * 109.47264 * 179.97438 * 15 13 3 19 19 C 1.35651 * 117.00043 * 179.97438 * 18 15 13 20 20 C 1.39087 * 119.88940 * 359.72889 * 19 18 15 21 21 C 1.37117 * 120.11837 * 179.71941 * 20 19 18 22 22 C 1.40038 * 119.87860 * 0.57369 * 21 20 19 23 23 C 1.46863 * 120.11121 * 179.68011 * 22 21 20 24 24 O 1.21291 * 120.00253 * 180.02562 * 23 22 21 25 25 C 1.40038 * 119.77736 * 359.70142 * 22 21 20 26 26 C 1.37120 * 119.88081 * 359.97438 * 25 22 21 27 27 H 1.09001 * 109.47274 * 60.00246 * 1 2 3 28 28 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47494 * 300.00272 * 1 2 3 30 30 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 31 31 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 32 32 H 1.09002 * 109.47248 * 29.99793 * 4 3 2 33 33 H 1.09004 * 109.47206 * 149.99350 * 4 3 2 34 34 H 0.97003 * 119.99677 * 179.97438 * 8 7 5 35 35 H 1.08001 * 119.93864 * 359.97438 * 20 19 18 36 36 H 1.07999 * 120.06055 * 180.26911 * 21 20 19 37 37 H 1.07995 * 119.99929 * 0.02562 * 23 22 21 38 38 H 1.08004 * 120.05943 * 179.97438 * 25 22 21 39 39 H 1.07995 * 119.94082 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 5.3917 2.1840 -3.2568 9 14 3.0133 3.4360 -3.9286 10 1 3.1161 4.8561 -3.5067 11 1 3.4069 3.3137 -5.3553 12 1 1.6137 2.9694 -3.7595 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 9 2.8014 0.1670 2.5463 17 9 0.6473 0.9280 2.5466 18 8 2.3022 2.1812 3.5585 19 6 2.1293 1.6924 4.8120 20 6 1.6636 0.3941 4.9915 21 6 1.4926 -0.1067 6.2565 22 6 1.7762 0.6955 7.3687 23 6 1.5881 0.1666 8.7258 24 8 1.8339 0.8634 9.6877 25 6 2.2393 2.0039 7.1825 26 6 2.4133 2.4929 5.9133 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 5.7178 2.5745 -4.0827 35 1 1.4403 -0.2219 4.1331 36 1 1.1351 -1.1164 6.3948 37 1 1.2309 -0.8427 8.8673 38 1 2.4591 2.6268 8.0371 39 1 2.7700 3.5019 5.7686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749305559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:02 Heat of formation + Delta-G solvation = -162.247439 kcal Electronic energy + Delta-G solvation = -28225.980926 eV Core-core repulsion = 23771.048343 eV Total energy + Delta-G solvation = -4454.932583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.77683 -47.67062 -40.53665 -39.51332 -39.14479 -37.38305 -35.84258 -32.86156 -31.69073 -30.99574 -30.61023 -28.92292 -26.88422 -24.66402 -23.58771 -23.24411 -22.57822 -21.34048 -19.87944 -19.38563 -18.48689 -17.69618 -17.35409 -17.05047 -16.79713 -16.08998 -15.73663 -15.21631 -15.05337 -14.80413 -14.67494 -14.51787 -14.41668 -14.23688 -14.07396 -13.95419 -13.74329 -13.62640 -13.39896 -12.94414 -12.78251 -12.61446 -12.41677 -12.16651 -12.00370 -11.64126 -11.36267 -11.08269 -10.88664 -10.65397 -10.33007 -10.14723 -9.81634 -9.61334 -9.50801 -8.81183 -8.72193 -8.18255 -6.21398 -4.23190 0.27714 0.97462 1.80998 2.07506 2.40632 3.03763 3.20009 3.25037 3.27375 3.32189 3.40786 3.91702 4.00312 4.27486 4.31419 4.44570 4.53747 4.73085 4.88800 5.05616 5.08739 5.10814 5.17509 5.35632 5.56017 5.56867 5.67919 5.81930 5.85000 5.96596 5.97746 6.14872 6.30296 6.38316 6.63879 6.67157 6.85874 7.08783 7.39659 7.62526 8.08490 8.35508 8.80724 9.35862 10.91384 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026779 B = 0.002977 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.356187 B = 9402.354137 C = 9837.841980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 N -0.560 5.560 4 C 0.217 3.783 5 C -0.540 4.540 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.890 5.890 9 Si 0.875 3.125 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.265 1.265 13 C 0.505 3.495 14 O -0.475 6.475 15 C 0.430 3.570 16 F -0.174 7.174 17 F -0.175 7.175 18 O -0.282 6.282 19 C 0.148 3.852 20 C -0.211 4.211 21 C -0.026 4.026 22 C -0.229 4.229 23 C 0.388 3.612 24 O -0.467 6.467 25 C -0.022 4.022 26 C -0.148 4.148 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.267 0.733 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.105 0.895 38 H 0.144 0.856 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.603 -7.527 16.323 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.039 4.039 3 N -0.292 5.292 4 C 0.098 3.902 5 C -0.578 4.578 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.528 5.528 9 Si 0.701 3.299 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.189 1.189 13 C 0.283 3.717 14 O -0.348 6.348 15 C 0.353 3.647 16 F -0.155 7.155 17 F -0.157 7.157 18 O -0.197 6.197 19 C 0.103 3.897 20 C -0.230 4.230 21 C -0.044 4.044 22 C -0.230 4.230 23 C 0.247 3.753 24 O -0.340 6.340 25 C -0.041 4.041 26 C -0.166 4.166 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.121 0.879 38 H 0.161 0.839 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.054 -6.336 16.577 20.908 hybrid contribution -0.525 -0.036 -0.843 0.994 sum -11.580 -6.372 15.734 20.549 Atomic orbital electron populations 1.22423 0.95588 1.02475 1.03292 1.21898 0.94524 0.82694 1.04745 1.47956 1.61523 1.14017 1.05709 1.19920 0.98281 0.93490 0.78498 1.21238 0.94887 1.33900 1.07751 0.90383 1.24826 0.95040 0.95610 0.97191 1.69882 1.15039 1.44360 1.23503 0.86873 0.81349 0.81655 0.79981 1.19689 1.20811 1.18945 1.19156 0.82237 0.87407 0.82904 1.90814 1.43144 1.16167 1.84627 1.22426 0.73695 0.78017 0.90594 1.93110 1.73304 1.52715 1.96366 1.93081 1.34684 1.91553 1.96376 1.86714 1.81122 1.39795 1.12080 1.19456 0.93562 0.92870 0.83774 1.21493 1.06455 0.95104 0.99914 1.21043 0.93518 0.99139 0.90695 1.20917 1.09344 0.96472 0.96299 1.23906 0.72752 0.92194 0.86445 1.90534 1.38658 1.61510 1.43335 1.21140 0.92196 0.94219 0.96509 1.20386 1.05400 1.01265 0.89571 0.91918 0.91434 0.91570 0.88303 0.90609 0.93932 0.93952 0.92280 0.84153 0.84225 0.87895 0.83862 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 10.00 37.16 0.37 -1.83 16 2 C 0.08 1.28 5.70 -4.05 -0.02 1.26 16 3 N -0.56 -11.04 2.46 -175.07 -0.43 -11.47 16 4 C 0.22 4.97 4.23 -5.20 -0.02 4.95 16 5 C -0.54 -14.77 9.94 -34.44 -0.34 -15.11 16 6 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.89 -26.51 13.96 55.43 0.77 -25.73 16 9 Si 0.88 20.46 27.47 -169.99 -4.67 15.80 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 13 C 0.51 10.22 7.23 -10.98 -0.08 10.14 16 14 O -0.48 -11.33 16.08 -14.35 -0.23 -11.56 16 15 C 0.43 7.02 1.43 36.01 0.05 7.07 16 16 F -0.17 -2.68 13.25 2.25 0.03 -2.65 16 17 F -0.18 -2.43 11.82 2.25 0.03 -2.41 16 18 O -0.28 -4.64 9.59 -38.56 -0.37 -5.01 16 19 C 0.15 1.99 6.50 -38.95 -0.25 1.73 16 20 C -0.21 -2.37 8.21 -39.67 -0.33 -2.69 16 21 C -0.03 -0.22 9.77 -39.31 -0.38 -0.60 16 22 C -0.23 -2.06 5.87 -105.06 -0.62 -2.68 16 23 C 0.39 3.02 11.44 34.22 0.39 3.41 16 24 O -0.47 -5.41 17.16 5.55 0.10 -5.32 16 25 C -0.02 -0.23 9.57 -39.31 -0.38 -0.60 16 26 C -0.15 -1.70 9.95 -39.67 -0.39 -2.10 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.82 5.57 -51.93 -0.29 0.53 16 30 H 0.10 1.50 8.07 -51.93 -0.42 1.08 16 31 H 0.08 1.05 5.29 -51.93 -0.27 0.77 16 32 H 0.04 0.91 7.13 -51.93 -0.37 0.54 16 33 H 0.04 1.02 6.85 -51.93 -0.36 0.67 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.14 1.54 5.07 -52.49 -0.27 1.27 16 36 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.10 0.38 8.06 -52.49 -0.42 -0.04 16 38 H 0.14 1.29 7.64 -52.48 -0.40 0.89 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 340.25 15.07 5.13 5.13 Total: -1.00 -33.24 340.25 -5.83 -39.07 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -4.08 Total: -0.85 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.10 Total: 5.00 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.34 Total: -37.21 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.51 Total: -21.88 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.06 Total: -5.06 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.24 -5.83 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749305559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.181 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds