Wall clock time and date at job start Tue Mar 31 2020 15:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46496 * 120.00223 * 270.00023 * 3 2 1 5 5 C 1.50697 * 109.47335 * 270.00056 * 4 3 2 6 6 H 1.07998 * 119.99876 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00362 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00086 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99901 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46965 * 90.00243 * 9 7 5 11 11 H 1.48501 * 109.47201 * 210.00295 * 9 7 5 12 12 H 1.48504 * 109.46922 * 330.00560 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 F 1.39900 * 109.47515 * 59.99807 * 15 13 3 17 17 F 1.39897 * 109.47274 * 299.99712 * 15 13 3 18 18 O 1.42905 * 109.47264 * 179.97438 * 15 13 3 19 19 C 1.35651 * 117.00043 * 179.97438 * 18 15 13 20 20 C 1.39087 * 119.88940 * 359.72889 * 19 18 15 21 21 C 1.37117 * 120.11837 * 179.71941 * 20 19 18 22 22 C 1.40038 * 119.87860 * 0.57369 * 21 20 19 23 23 C 1.46863 * 120.11121 * 179.68011 * 22 21 20 24 24 O 1.21291 * 120.00253 * 180.02562 * 23 22 21 25 25 C 1.40038 * 119.77736 * 359.70142 * 22 21 20 26 26 C 1.37120 * 119.88081 * 359.97438 * 25 22 21 27 27 H 1.09001 * 109.47274 * 60.00246 * 1 2 3 28 28 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47494 * 300.00272 * 1 2 3 30 30 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 31 31 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 32 32 H 1.09002 * 109.47248 * 29.99793 * 4 3 2 33 33 H 1.09004 * 109.47206 * 149.99350 * 4 3 2 34 34 H 0.97003 * 119.99677 * 179.97438 * 8 7 5 35 35 H 1.08001 * 119.93864 * 359.97438 * 20 19 18 36 36 H 1.07999 * 120.06055 * 180.26911 * 21 20 19 37 37 H 1.07995 * 119.99929 * 0.02562 * 23 22 21 38 38 H 1.08004 * 120.05943 * 179.97438 * 25 22 21 39 39 H 1.07995 * 119.94082 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 5.3917 2.1840 -3.2568 9 14 3.0133 3.4360 -3.9286 10 1 3.1161 4.8561 -3.5067 11 1 3.4069 3.3137 -5.3553 12 1 1.6137 2.9694 -3.7595 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 9 2.8014 0.1670 2.5463 17 9 0.6473 0.9280 2.5466 18 8 2.3022 2.1812 3.5585 19 6 2.1293 1.6924 4.8120 20 6 1.6636 0.3941 4.9915 21 6 1.4926 -0.1067 6.2565 22 6 1.7762 0.6955 7.3687 23 6 1.5881 0.1666 8.7258 24 8 1.8339 0.8634 9.6877 25 6 2.2393 2.0039 7.1825 26 6 2.4133 2.4929 5.9133 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 5.7178 2.5745 -4.0827 35 1 1.4403 -0.2219 4.1331 36 1 1.1351 -1.1164 6.3948 37 1 1.2309 -0.8427 8.8673 38 1 2.4591 2.6268 8.0371 39 1 2.7700 3.5019 5.7686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749305559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:01 Heat of formation + Delta-G solvation = -183.312215 kcal Electronic energy + Delta-G solvation = -28226.894363 eV Core-core repulsion = 23771.048343 eV Total energy + Delta-G solvation = -4455.846021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.02308 -48.90170 -41.46856 -41.01786 -40.05880 -38.31878 -37.39012 -34.90919 -32.48950 -32.10027 -31.85392 -30.49881 -28.34208 -25.67211 -24.66607 -24.58838 -23.88742 -22.20857 -21.25438 -20.52253 -19.76831 -19.20857 -18.97165 -18.22012 -17.79329 -17.48255 -16.70040 -16.57840 -16.52024 -16.03840 -15.78788 -15.60479 -15.44659 -15.32670 -15.22210 -15.13052 -14.97214 -14.82246 -14.54708 -14.43524 -14.07791 -13.95273 -13.63130 -13.58735 -13.25362 -13.03875 -12.61380 -12.47568 -12.16764 -12.10795 -11.99585 -11.78197 -11.31627 -10.85996 -10.81193 -10.28884 -9.84376 -9.69302 -8.36673 -6.44669 -0.50494 0.19694 0.52088 0.82926 1.34545 1.38568 1.39282 1.46249 1.75040 1.95125 2.29482 2.62342 2.64218 2.98112 3.25380 3.34587 3.52741 3.63198 3.90387 3.97423 4.18870 4.23903 4.27461 4.46857 4.50901 4.62278 4.72130 4.81569 4.85260 4.91312 4.91601 5.03443 5.20762 5.25013 5.32130 5.34817 5.36573 5.77475 6.03538 6.14326 6.49856 6.55925 6.59948 7.19173 8.79872 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026779 B = 0.002977 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.356187 B = 9402.354137 C = 9837.841980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.075 3.925 3 N -0.564 5.564 4 C 0.224 3.776 5 C -0.546 4.546 6 H 0.031 0.969 7 C 0.016 3.984 8 N -0.941 5.941 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.275 1.275 12 H -0.231 1.231 13 C 0.493 3.507 14 O -0.525 6.525 15 C 0.450 3.550 16 F -0.169 7.169 17 F -0.158 7.158 18 O -0.306 6.306 19 C 0.110 3.890 20 C -0.219 4.219 21 C -0.009 4.009 22 C -0.228 4.228 23 C 0.399 3.601 24 O -0.507 6.507 25 C -0.030 4.030 26 C -0.158 4.158 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.270 0.730 35 H 0.143 0.857 36 H 0.188 0.812 37 H 0.162 0.838 38 H 0.149 0.851 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.538 -9.552 17.318 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.046 4.046 3 N -0.295 5.295 4 C 0.103 3.897 5 C -0.584 4.584 6 H 0.050 0.950 7 C -0.183 4.183 8 N -0.580 5.580 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.154 1.154 13 C 0.273 3.727 14 O -0.401 6.401 15 C 0.372 3.628 16 F -0.150 7.150 17 F -0.139 7.139 18 O -0.223 6.223 19 C 0.067 3.933 20 C -0.237 4.237 21 C -0.026 4.026 22 C -0.229 4.229 23 C 0.261 3.739 24 O -0.383 6.383 25 C -0.048 4.048 26 C -0.176 4.176 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.161 0.839 36 H 0.205 0.795 37 H 0.178 0.822 38 H 0.167 0.833 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.028 -8.426 17.596 24.029 hybrid contribution 0.453 0.498 -1.007 1.212 sum -13.574 -7.928 16.588 22.854 Atomic orbital electron populations 1.22369 0.92684 1.04642 1.03135 1.22245 0.96837 0.80150 1.05357 1.48065 1.61018 1.15582 1.04804 1.19653 0.95909 0.93518 0.80613 1.21445 0.96678 1.33009 1.07272 0.95044 1.25827 0.96724 0.96966 0.98783 1.70039 1.17444 1.46096 1.24450 0.85752 0.80679 0.79011 0.77792 1.20079 1.20061 1.15359 1.19771 0.81310 0.87208 0.84400 1.90773 1.45158 1.18330 1.85851 1.21443 0.74540 0.77669 0.89123 1.93118 1.73386 1.52209 1.96308 1.93114 1.33211 1.91291 1.96274 1.86662 1.81992 1.40317 1.13287 1.19826 0.96284 0.94581 0.82635 1.21660 1.06539 0.94111 1.01427 1.21488 0.91430 1.00794 0.88910 1.21326 1.07901 0.95866 0.97813 1.24606 0.70974 0.93615 0.84716 1.90546 1.40518 1.62960 1.44301 1.21321 0.92250 0.95359 0.95859 1.20482 1.05883 1.01362 0.89920 0.92091 0.88064 0.91678 0.88447 0.89348 0.91181 0.95072 0.92056 0.83906 0.79496 0.82217 0.83307 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 10.00 71.98 0.72 -2.96 16 2 C 0.08 2.18 5.70 86.38 0.49 2.67 16 3 N -0.56 -22.30 2.46 -826.18 -2.03 -24.33 16 4 C 0.22 10.24 4.23 85.63 0.36 10.60 16 5 C -0.55 -30.85 9.94 25.60 0.25 -30.60 16 6 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 7 C 0.02 0.91 5.47 84.65 0.46 1.37 16 8 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 9 Si 0.95 42.09 27.47 68.60 1.88 43.97 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.23 -8.94 6.54 99.48 0.65 -8.29 16 13 C 0.49 20.48 7.23 87.66 0.63 21.11 16 14 O -0.53 -26.25 16.08 16.01 0.26 -26.00 16 15 C 0.45 14.73 1.43 71.24 0.10 14.83 16 16 F -0.17 -5.16 13.25 44.97 0.60 -4.57 16 17 F -0.16 -4.16 11.82 44.97 0.53 -3.63 16 18 O -0.31 -10.41 9.59 -70.63 -0.68 -11.09 16 19 C 0.11 2.96 6.50 22.68 0.15 3.11 16 20 C -0.22 -4.49 8.21 22.21 0.18 -4.31 16 21 C -0.01 -0.11 9.77 22.44 0.22 0.11 16 22 C -0.23 -3.45 5.87 -20.15 -0.12 -3.57 16 23 C 0.40 4.70 11.44 70.08 0.80 5.50 16 24 O -0.51 -10.64 17.16 -3.06 -0.05 -10.69 16 25 C -0.03 -0.58 9.57 22.44 0.21 -0.36 16 26 C -0.16 -3.72 9.95 22.21 0.22 -3.50 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 1.43 5.57 -2.39 -0.01 1.42 16 30 H 0.10 2.85 8.07 -2.39 -0.02 2.83 16 31 H 0.09 2.32 5.29 -2.39 -0.01 2.30 16 32 H 0.07 2.84 7.13 -2.39 -0.02 2.82 16 33 H 0.03 1.51 6.85 -2.38 -0.02 1.49 16 34 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.14 2.80 5.07 -2.91 -0.01 2.79 16 36 H 0.19 0.62 8.06 -2.91 -0.02 0.59 16 37 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 38 H 0.15 2.63 7.64 -2.91 -0.02 2.61 16 39 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -77.90 340.25 6.55 -71.35 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.05 Total: 8.60 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 4.69 Total: 14.02 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -1.73 Total: -81.97 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -0.47 Total: -47.77 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 1.13 Total: -8.19 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.88 Total: 43.97 kcal Total: -77.90 6.55 -71.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749305559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.967 kcal (2) G-P(sol) polarization free energy of solvation -77.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds