Wall clock time and date at job start Tue Mar 31 2020 15:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50696 * 109.47344 * 64.99877 * 4 2 1 6 6 O 1.20823 * 120.00003 * 359.97438 * 5 4 2 7 7 O 1.34229 * 119.99898 * 179.97438 * 5 4 2 8 8 C 1.45204 * 116.99739 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.46906 * 180.02562 * 8 7 5 10 10 O 1.21288 * 120.00324 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99793 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99832 * 180.02562 * 11 9 8 13 13 H 1.08002 * 119.99701 * 0.02562 * 12 11 9 14 14 C 1.38948 * 119.99797 * 180.02562 * 12 11 9 15 15 N 1.31416 * 120.00002 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00155 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47452 * 89.99502 * 16 14 12 18 18 H 1.48498 * 109.47192 * 209.99985 * 16 14 12 19 19 H 1.48508 * 109.47120 * 329.99427 * 16 14 12 20 20 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 21 21 C 1.38231 * 119.98703 * 59.72569 * 20 2 1 22 22 C 1.38184 * 120.05162 * 179.76580 * 21 20 2 23 23 C 1.38491 * 120.02363 * 0.50944 * 22 21 20 24 24 F 1.35098 * 120.01387 * 179.76918 * 23 22 21 25 25 C 1.38402 * 119.97459 * 359.74471 * 23 22 21 26 26 C 1.38436 * 119.95057 * 0.02562 * 25 23 22 27 27 F 1.35095 * 120.01742 * 180.02562 * 26 25 23 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 1.09008 * 109.46873 * 184.99985 * 4 2 1 32 32 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 33 33 H 1.08994 * 109.47321 * 300.00605 * 8 7 5 34 34 H 1.09003 * 109.46919 * 60.00214 * 8 7 5 35 35 H 0.97000 * 119.99997 * 0.02562 * 11 9 8 36 36 H 0.96993 * 119.99886 * 180.02562 * 15 14 12 37 37 H 1.08003 * 119.97290 * 0.02562 * 21 20 2 38 38 H 1.07996 * 119.98809 * 180.25200 * 22 21 20 39 39 H 1.07995 * 120.02320 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0132 1.0831 -2.3637 7 8 1.9838 -0.3896 -3.6952 8 6 1.5656 0.4109 -4.8322 9 6 2.0358 -0.2421 -6.1063 10 8 2.6614 -1.2803 -6.0607 11 7 1.7604 0.3269 -7.2966 12 6 2.1877 -0.2675 -8.4559 13 1 2.7447 -1.1919 -8.4151 14 6 1.9042 0.3194 -9.6830 15 7 2.3142 -0.2501 -10.7941 16 14 0.9414 1.9186 -9.7533 17 1 1.8829 3.0659 -9.7022 18 1 0.1631 1.9727 -11.0168 19 1 0.0127 1.9885 -8.5965 20 6 2.0323 -0.7104 1.2305 21 6 1.6936 -2.0322 1.4518 22 6 2.1574 -2.6863 2.5772 23 6 2.9537 -2.0150 3.4900 24 9 3.4033 -2.6534 4.5925 25 6 3.2893 -0.6901 3.2721 26 6 2.8279 -0.0372 2.1419 27 9 3.1550 1.2559 1.9276 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 3.1263 -0.7995 -1.2057 32 1 1.6053 -1.7197 -1.2952 33 1 0.4784 0.4868 -4.8430 34 1 1.9986 1.4081 -4.7533 35 1 1.2598 1.1569 -7.3331 36 1 2.1166 0.1598 -11.6507 37 1 1.0693 -2.5552 0.7425 38 1 1.8955 -3.7201 2.7470 39 1 3.9105 -0.1660 3.9832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751863212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:37 Heat of formation + Delta-G solvation = -189.841365 kcal Electronic energy + Delta-G solvation = -26372.923955 eV Core-core repulsion = 21916.794809 eV Total energy + Delta-G solvation = -4456.129146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.43482 -49.40382 -40.68558 -39.57412 -38.38057 -36.57156 -35.23959 -34.07744 -31.81755 -31.30562 -30.27430 -29.06105 -27.79014 -24.68468 -24.24359 -23.43817 -21.68311 -20.18805 -19.65332 -18.73661 -18.60162 -17.95705 -17.53186 -16.65072 -16.45045 -16.28919 -16.26764 -15.93197 -15.70916 -15.32466 -14.95806 -14.83080 -14.78840 -14.39879 -13.92596 -13.67365 -13.55970 -13.13863 -12.96099 -12.78435 -12.45326 -12.32080 -12.23496 -12.16848 -12.03994 -11.56468 -11.50085 -11.27059 -11.17525 -10.66371 -10.54410 -10.37437 -10.06298 -9.69107 -9.55131 -9.07590 -8.68327 -8.30743 -6.40545 -3.93535 0.44803 0.52325 2.19379 2.55927 2.88486 2.97442 3.02293 3.11072 3.40061 3.53960 3.92618 4.02155 4.05928 4.06319 4.34091 4.45312 4.49709 4.62096 4.72975 4.90621 5.08066 5.09665 5.21922 5.28414 5.35428 5.36502 5.39541 5.45179 5.52894 5.54593 5.61700 5.65518 5.69346 5.93503 6.03081 6.27948 6.53407 7.43391 7.76941 7.99552 8.46419 8.82338 9.28492 9.64117 10.71713 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029375 B = 0.002029 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.977202 B =13793.796959 C =14193.889484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 H 0.097 0.903 4 C -0.107 4.107 5 C 0.460 3.540 6 O -0.511 6.511 7 O -0.324 6.324 8 C 0.058 3.942 9 C 0.447 3.553 10 O -0.557 6.557 11 N -0.580 5.580 12 C -0.308 4.308 13 H 0.122 0.878 14 C 0.045 3.955 15 N -0.875 5.875 16 Si 0.879 3.121 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.268 1.268 20 C -0.119 4.119 21 C -0.055 4.055 22 C -0.160 4.160 23 C 0.126 3.874 24 F -0.132 7.132 25 C -0.191 4.191 26 C 0.136 3.864 27 F -0.126 7.126 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.373 0.627 36 H 0.276 0.724 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.243 0.249 28.228 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.060 4.060 3 H 0.115 0.885 4 C -0.145 4.145 5 C 0.304 3.696 6 O -0.400 6.400 7 O -0.239 6.239 8 C -0.020 4.020 9 C 0.232 3.768 10 O -0.439 6.439 11 N -0.220 5.220 12 C -0.436 4.436 13 H 0.140 0.860 14 C -0.159 4.159 15 N -0.514 5.514 16 Si 0.705 3.295 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.194 1.194 20 C -0.120 4.120 21 C -0.073 4.073 22 C -0.178 4.178 23 C 0.106 3.894 24 F -0.111 7.111 25 C -0.210 4.210 26 C 0.117 3.883 27 F -0.105 7.105 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.206 0.794 36 H 0.086 0.914 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.952 -0.128 28.035 28.190 hybrid contribution -0.602 1.548 -0.079 1.663 sum -3.553 1.420 27.955 28.216 Atomic orbital electron populations 1.22011 0.92779 1.02320 1.03783 1.19902 0.97467 0.99825 0.88770 0.88493 1.21449 1.04469 1.00123 0.88413 1.23609 0.76457 0.84310 0.85271 1.90629 1.37598 1.24546 1.87254 1.86564 1.71426 1.51669 1.14225 1.22746 1.00776 0.94451 0.84000 1.19208 0.86414 0.87617 0.83570 1.90604 1.43017 1.24021 1.86277 1.42046 1.50715 1.23581 1.05627 1.19425 1.33662 1.09412 0.81149 0.86009 1.25044 0.97624 0.98311 0.94956 1.69614 1.44820 1.39243 0.97705 0.86674 0.80424 0.83687 0.78682 1.19400 1.19943 1.19366 1.19938 0.99662 0.95209 0.97234 1.20823 0.97414 0.92735 0.96361 1.21235 0.99991 1.01707 0.94907 1.17319 0.97050 0.90261 0.84744 1.91540 1.87347 1.81501 1.50682 1.21028 1.05697 0.94653 0.99651 1.17132 0.97331 0.79239 0.94646 1.91542 1.90703 1.33717 1.94508 0.92465 0.92262 0.89945 0.87195 0.87127 0.89412 0.89404 0.79390 0.91379 0.83565 0.83788 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.74 37.16 0.32 -0.95 16 2 C -0.04 -0.36 2.19 -91.77 -0.20 -0.56 16 3 H 0.10 0.99 6.94 -51.93 -0.36 0.63 16 4 C -0.11 -1.00 5.03 -27.88 -0.14 -1.14 16 5 C 0.46 6.26 7.68 36.00 0.28 6.53 16 6 O -0.51 -7.64 13.72 -18.75 -0.26 -7.90 16 7 O -0.32 -5.49 9.76 -45.90 -0.45 -5.94 16 8 C 0.06 1.01 5.94 36.00 0.21 1.22 16 9 C 0.45 10.19 7.86 -10.99 -0.09 10.10 16 10 O -0.56 -15.13 16.08 -14.11 -0.23 -15.36 16 11 N -0.58 -13.60 5.09 -10.96 -0.06 -13.66 16 12 C -0.31 -8.55 10.16 -14.93 -0.15 -8.71 16 13 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 14 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 15 N -0.87 -24.98 13.96 55.50 0.77 -24.21 16 16 Si 0.88 18.89 27.74 -169.99 -4.71 14.18 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.24 6.52 56.52 0.37 -4.88 16 20 C -0.12 -0.92 4.79 -104.55 -0.50 -1.42 16 21 C -0.06 -0.34 8.76 -39.60 -0.35 -0.68 16 22 C -0.16 -0.97 10.02 -39.51 -0.40 -1.37 16 23 C 0.13 0.93 7.30 -39.43 -0.29 0.64 16 24 F -0.13 -1.08 17.27 2.25 0.04 -1.04 16 25 C -0.19 -1.43 10.01 -39.45 -0.39 -1.82 16 26 C 0.14 1.15 7.24 -39.43 -0.29 0.86 16 27 F -0.13 -1.23 16.19 2.25 0.04 -1.20 16 28 H 0.06 0.38 7.37 -51.93 -0.38 0.00 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.87 5.96 -51.93 -0.31 0.56 16 31 H 0.11 0.94 8.14 -51.92 -0.42 0.51 16 32 H 0.11 0.81 7.58 -51.93 -0.39 0.42 16 33 H 0.09 1.34 8.13 -51.93 -0.42 0.91 16 34 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 35 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 36 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.15 0.60 7.16 -52.48 -0.38 0.23 16 38 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -33.26 346.88 -5.85 -39.10 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.15 Total: 6.99 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.07 Total: 3.80 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.72 Total: -37.86 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.93 Total: -29.20 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.08 Total: -2.24 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.26 -5.85 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751863212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.738 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds