Wall clock time and date at job start Tue Mar 31 2020 15:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50696 * 109.47344 * 64.99877 * 4 2 1 6 6 O 1.20823 * 120.00003 * 359.97438 * 5 4 2 7 7 O 1.34229 * 119.99898 * 179.97438 * 5 4 2 8 8 C 1.45204 * 116.99739 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.46906 * 180.02562 * 8 7 5 10 10 O 1.21288 * 120.00324 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99793 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99832 * 180.02562 * 11 9 8 13 13 H 1.08002 * 119.99701 * 0.02562 * 12 11 9 14 14 C 1.38948 * 119.99797 * 180.02562 * 12 11 9 15 15 N 1.31416 * 120.00002 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00155 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47452 * 89.99502 * 16 14 12 18 18 H 1.48498 * 109.47192 * 209.99985 * 16 14 12 19 19 H 1.48508 * 109.47120 * 329.99427 * 16 14 12 20 20 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 21 21 C 1.38231 * 119.98703 * 59.72569 * 20 2 1 22 22 C 1.38184 * 120.05162 * 179.76580 * 21 20 2 23 23 C 1.38491 * 120.02363 * 0.50944 * 22 21 20 24 24 F 1.35098 * 120.01387 * 179.76918 * 23 22 21 25 25 C 1.38402 * 119.97459 * 359.74471 * 23 22 21 26 26 C 1.38436 * 119.95057 * 0.02562 * 25 23 22 27 27 F 1.35095 * 120.01742 * 180.02562 * 26 25 23 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 1.09008 * 109.46873 * 184.99985 * 4 2 1 32 32 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 33 33 H 1.08994 * 109.47321 * 300.00605 * 8 7 5 34 34 H 1.09003 * 109.46919 * 60.00214 * 8 7 5 35 35 H 0.97000 * 119.99997 * 0.02562 * 11 9 8 36 36 H 0.96993 * 119.99886 * 180.02562 * 15 14 12 37 37 H 1.08003 * 119.97290 * 0.02562 * 21 20 2 38 38 H 1.07996 * 119.98809 * 180.25200 * 22 21 20 39 39 H 1.07995 * 120.02320 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0132 1.0831 -2.3637 7 8 1.9838 -0.3896 -3.6952 8 6 1.5656 0.4109 -4.8322 9 6 2.0358 -0.2421 -6.1063 10 8 2.6614 -1.2803 -6.0607 11 7 1.7604 0.3269 -7.2966 12 6 2.1877 -0.2675 -8.4559 13 1 2.7447 -1.1919 -8.4151 14 6 1.9042 0.3194 -9.6830 15 7 2.3142 -0.2501 -10.7941 16 14 0.9414 1.9186 -9.7533 17 1 1.8829 3.0659 -9.7022 18 1 0.1631 1.9727 -11.0168 19 1 0.0127 1.9885 -8.5965 20 6 2.0323 -0.7104 1.2305 21 6 1.6936 -2.0322 1.4518 22 6 2.1574 -2.6863 2.5772 23 6 2.9537 -2.0150 3.4900 24 9 3.4033 -2.6534 4.5925 25 6 3.2893 -0.6901 3.2721 26 6 2.8279 -0.0372 2.1419 27 9 3.1550 1.2559 1.9276 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 3.1263 -0.7995 -1.2057 32 1 1.6053 -1.7197 -1.2952 33 1 0.4784 0.4868 -4.8430 34 1 1.9986 1.4081 -4.7533 35 1 1.2598 1.1569 -7.3331 36 1 2.1166 0.1598 -11.6507 37 1 1.0693 -2.5552 0.7425 38 1 1.8955 -3.7201 2.7470 39 1 3.9105 -0.1660 3.9832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751863212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:36 Heat of formation + Delta-G solvation = -209.910021 kcal Electronic energy + Delta-G solvation = -26373.794197 eV Core-core repulsion = 21916.794809 eV Total energy + Delta-G solvation = -4456.999388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.07125 -50.00895 -41.78324 -40.39582 -39.99034 -37.74229 -36.10959 -35.99922 -33.86520 -31.82692 -31.12000 -30.13503 -28.82154 -26.40685 -24.99548 -24.04253 -22.59518 -21.53361 -20.99655 -20.50581 -19.36254 -18.88725 -18.30092 -17.81794 -17.77193 -17.29440 -17.01452 -16.80429 -16.71991 -16.35121 -16.15621 -16.03677 -15.51226 -15.35500 -15.07663 -14.84379 -14.67653 -14.29901 -14.21128 -14.01841 -13.76138 -13.54486 -13.14201 -12.99379 -12.94866 -12.66077 -12.46052 -12.26050 -12.20120 -12.00384 -11.84659 -11.76381 -11.58650 -11.40587 -10.60053 -10.34165 -10.07602 -9.64694 -8.46119 -6.09233 -0.11089 0.00461 1.14772 1.29503 1.33637 1.39638 1.46983 1.76254 2.20063 2.33677 2.81010 2.85481 3.08282 3.35114 3.45749 3.51709 3.73789 3.83396 3.90651 4.01356 4.03938 4.14255 4.15924 4.19354 4.38493 4.60339 4.65219 4.79878 4.85168 4.91537 4.98970 5.04485 5.09399 5.28386 5.32074 5.44498 5.53002 5.75376 5.85473 6.46820 6.68097 6.78073 7.25886 7.77900 8.70446 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029375 B = 0.002029 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.977202 B =13793.796959 C =14193.889484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.035 4.035 3 H 0.077 0.923 4 C -0.103 4.103 5 C 0.461 3.539 6 O -0.525 6.525 7 O -0.347 6.347 8 C 0.068 3.932 9 C 0.448 3.552 10 O -0.609 6.609 11 N -0.577 5.577 12 C -0.333 4.333 13 H 0.061 0.939 14 C -0.009 4.009 15 N -0.925 5.925 16 Si 0.961 3.039 17 H -0.256 1.256 18 H -0.272 1.272 19 H -0.231 1.231 20 C -0.120 4.120 21 C -0.050 4.050 22 C -0.151 4.151 23 C 0.114 3.886 24 F -0.139 7.139 25 C -0.194 4.194 26 C 0.117 3.883 27 F -0.140 7.140 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.393 0.607 36 H 0.282 0.718 37 H 0.173 0.827 38 H 0.167 0.833 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 1.309 29.883 30.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.053 4.053 3 H 0.096 0.904 4 C -0.140 4.140 5 C 0.306 3.694 6 O -0.414 6.414 7 O -0.263 6.263 8 C -0.009 4.009 9 C 0.235 3.765 10 O -0.493 6.493 11 N -0.219 5.219 12 C -0.462 4.462 13 H 0.079 0.921 14 C -0.209 4.209 15 N -0.565 5.565 16 Si 0.781 3.219 17 H -0.180 1.180 18 H -0.197 1.197 19 H -0.154 1.154 20 C -0.121 4.121 21 C -0.068 4.068 22 C -0.170 4.170 23 C 0.095 3.905 24 F -0.117 7.117 25 C -0.214 4.214 26 C 0.098 3.902 27 F -0.118 7.118 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.156 0.844 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.229 0.771 36 H 0.092 0.908 37 H 0.190 0.810 38 H 0.185 0.815 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.855 0.945 29.724 30.133 hybrid contribution 0.056 1.102 -0.522 1.220 sum -4.799 2.047 29.203 29.665 Atomic orbital electron populations 1.21982 0.92397 1.03458 1.02826 1.19782 0.97699 0.98898 0.88942 0.90428 1.21622 1.05264 1.00773 0.86321 1.24356 0.75779 0.84404 0.84911 1.90628 1.38298 1.25314 1.87168 1.86573 1.72219 1.52336 1.15150 1.22563 1.02317 0.94470 0.81575 1.20243 0.84480 0.86707 0.85080 1.90578 1.44938 1.26454 1.87365 1.41834 1.51101 1.24228 1.04727 1.19003 1.34945 1.08541 0.83668 0.92096 1.26098 0.98281 1.02909 0.93590 1.69782 1.46243 1.41729 0.98741 0.85416 0.79173 0.77248 0.80077 1.18023 1.19682 1.15420 1.19892 0.99787 0.95855 0.96608 1.21099 0.97074 0.91920 0.96669 1.21516 0.98686 1.02643 0.94119 1.17505 0.97664 0.90329 0.85000 1.91525 1.87540 1.81558 1.51114 1.21119 1.05719 0.94955 0.99576 1.17326 0.98424 0.78974 0.95516 1.91505 1.90995 1.34678 1.94665 0.90295 0.92012 0.92053 0.86239 0.84444 0.86548 0.86817 0.77113 0.90832 0.80979 0.81518 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.74 71.98 0.63 -1.55 16 2 C -0.03 -0.54 2.19 -11.54 -0.03 -0.57 16 3 H 0.08 1.52 6.94 -2.39 -0.02 1.51 16 4 C -0.10 -1.67 5.03 29.85 0.15 -1.52 16 5 C 0.46 11.60 7.68 71.23 0.55 12.14 16 6 O -0.52 -14.65 13.72 21.97 0.30 -14.35 16 7 O -0.35 -11.19 9.76 -45.05 -0.44 -11.63 16 8 C 0.07 2.20 5.94 71.23 0.42 2.63 16 9 C 0.45 20.34 7.86 87.65 0.69 21.03 16 10 O -0.61 -34.06 16.08 15.74 0.25 -33.81 16 11 N -0.58 -26.81 5.09 -306.98 -1.56 -28.37 16 12 C -0.33 -19.11 10.16 84.04 0.85 -18.25 16 13 H 0.06 4.16 7.39 -2.91 -0.02 4.13 16 14 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 15 N -0.93 -54.41 13.96 21.66 0.30 -54.10 16 16 Si 0.96 37.62 27.74 68.60 1.90 39.53 16 17 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 18 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 19 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 20 C -0.12 -1.61 4.79 -19.81 -0.09 -1.71 16 21 C -0.05 -0.44 8.76 22.26 0.19 -0.25 16 22 C -0.15 -1.40 10.02 22.32 0.22 -1.18 16 23 C 0.11 1.50 7.30 22.37 0.16 1.66 16 24 F -0.14 -2.09 17.27 44.97 0.78 -1.31 16 25 C -0.19 -2.73 10.01 22.36 0.22 -2.51 16 26 C 0.12 1.87 7.24 22.37 0.16 2.03 16 27 F -0.14 -2.72 16.19 44.97 0.73 -2.00 16 28 H 0.08 0.79 7.37 -2.39 -0.02 0.77 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.18 5.96 -2.39 -0.01 1.17 16 31 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.14 1.52 7.58 -2.39 -0.02 1.50 16 33 H 0.12 3.15 8.13 -2.39 -0.02 3.13 16 34 H 0.11 3.14 8.13 -2.39 -0.02 3.12 16 35 H 0.39 14.95 5.76 -92.71 -0.53 14.41 16 36 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.17 0.62 7.16 -2.91 -0.02 0.60 16 38 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 39 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -77.26 346.88 7.39 -69.87 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.52 Total: 24.23 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 4.61 Total: 11.95 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.26 Total: -82.48 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: 0.11 Total: -59.79 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 1.50 Total: -3.31 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 1.90 Total: 39.53 kcal Total: -77.26 7.39 -69.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751863212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.042 kcal (2) G-P(sol) polarization free energy of solvation -77.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds