Wall clock time and date at job start Tue Mar 31 2020 15:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 O 1.20824 * 120.00141 * 0.02562 * 5 4 2 7 7 O 1.34226 * 119.99900 * 180.02562 * 5 4 2 8 8 C 1.45203 * 116.99798 * 179.97438 * 7 5 4 9 9 C 1.50710 * 109.46747 * 179.97438 * 8 7 5 10 10 O 1.21285 * 119.99966 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99577 * 179.97438 * 9 8 7 12 12 C 1.37096 * 119.99669 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00381 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99653 * 180.02562 * 12 11 9 15 15 N 1.31411 * 119.99943 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00294 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47062 * 90.00120 * 16 14 12 18 18 H 1.48497 * 109.47344 * 210.00183 * 16 14 12 19 19 H 1.48502 * 109.47165 * 330.00316 * 16 14 12 20 20 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 21 21 C 1.38232 * 119.98826 * 300.00602 * 20 2 1 22 22 C 1.38191 * 120.04687 * 179.97438 * 21 20 2 23 23 C 1.38497 * 120.02641 * 359.97176 * 22 21 20 24 24 F 1.35098 * 120.00963 * 179.97438 * 23 22 21 25 25 C 1.38389 * 119.97532 * 0.02562 * 23 22 21 26 26 C 1.38440 * 119.95130 * 359.76297 * 25 23 22 27 27 F 1.35103 * 120.01611 * 180.23341 * 26 25 23 28 28 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 29 29 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 31 31 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 32 32 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 33 33 H 1.08993 * 109.47391 * 299.99599 * 8 7 5 34 34 H 1.09000 * 109.47246 * 59.99772 * 8 7 5 35 35 H 0.96997 * 120.00193 * 0.02562 * 11 9 8 36 36 H 0.96997 * 120.00200 * 180.02562 * 15 14 12 37 37 H 1.07996 * 119.97848 * 359.97438 * 21 20 2 38 38 H 1.08005 * 119.98622 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.02709 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0133 1.0831 2.3637 7 8 1.9838 -0.3895 3.6951 8 6 1.5667 0.4116 4.8321 9 6 2.0368 -0.2416 6.1063 10 8 2.6614 -1.2802 6.0606 11 7 1.7631 0.3285 7.2965 12 6 2.1912 -0.2654 8.4556 13 1 2.7474 -1.1903 8.4151 14 6 1.9085 0.3221 9.6827 15 7 2.3192 -0.2469 10.7937 16 14 0.9459 1.9214 9.7529 17 1 -0.5059 1.6218 9.8423 18 1 1.3651 2.6994 10.9463 19 1 1.2131 2.7143 8.5261 20 6 2.0324 -0.7105 -1.2304 21 6 1.6982 -2.0339 -1.4488 22 6 2.1577 -2.6865 -2.5770 23 6 2.9532 -2.0149 -3.4903 24 9 3.4027 -2.6534 -4.5928 25 6 3.2884 -0.6900 -3.2727 26 6 2.8239 -0.0359 -2.1444 27 9 3.1464 1.2589 -1.9330 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2057 33 1 2.0005 1.4084 4.7529 34 1 0.4795 0.4883 4.8432 35 1 1.2632 1.1590 7.3330 36 1 2.1216 0.1630 11.6503 37 1 1.0775 -2.5583 -0.7374 38 1 1.8956 -3.7204 -2.7469 39 1 3.9090 -0.1656 -3.9841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751863213.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:39 Heat of formation + Delta-G solvation = -189.839542 kcal Electronic energy + Delta-G solvation = -26372.600918 eV Core-core repulsion = 21916.471851 eV Total energy + Delta-G solvation = -4456.129067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.43452 -49.40194 -40.68560 -39.57353 -38.38083 -36.57176 -35.23959 -34.07856 -31.81814 -31.30497 -30.27362 -29.06102 -27.78966 -24.68371 -24.24338 -23.43932 -21.68295 -20.18807 -19.65346 -18.73660 -18.60188 -17.95706 -17.53106 -16.65064 -16.44900 -16.29021 -16.26725 -15.93177 -15.70870 -15.32434 -14.95569 -14.83016 -14.79366 -14.39594 -13.92258 -13.68005 -13.55960 -13.13789 -12.94846 -12.80103 -12.44948 -12.31887 -12.23551 -12.16612 -12.04328 -11.56484 -11.49903 -11.27142 -11.17623 -10.66487 -10.54287 -10.37480 -10.06297 -9.69134 -9.55133 -9.07557 -8.68320 -8.30784 -6.40542 -3.93521 0.44819 0.52319 2.19377 2.55922 2.88468 2.97597 3.02170 3.11071 3.40054 3.53982 3.92601 4.02151 4.05924 4.06330 4.34061 4.45279 4.49692 4.62163 4.72939 4.90599 5.08037 5.09687 5.21940 5.28442 5.35420 5.36524 5.39512 5.45191 5.52924 5.54623 5.61653 5.65510 5.69320 5.93529 6.03052 6.27946 6.53417 7.43378 7.76941 7.99550 8.46425 8.82352 9.28503 9.64136 10.71709 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029371 B = 0.002029 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.081547 B =13793.903691 C =14195.814555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 H 0.097 0.903 4 C -0.107 4.107 5 C 0.460 3.540 6 O -0.511 6.511 7 O -0.324 6.324 8 C 0.058 3.942 9 C 0.447 3.553 10 O -0.557 6.557 11 N -0.580 5.580 12 C -0.308 4.308 13 H 0.122 0.878 14 C 0.045 3.955 15 N -0.875 5.875 16 Si 0.879 3.121 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.268 1.268 20 C -0.119 4.119 21 C -0.055 4.055 22 C -0.160 4.160 23 C 0.126 3.874 24 F -0.132 7.132 25 C -0.191 4.191 26 C 0.136 3.864 27 F -0.126 7.126 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.373 0.627 36 H 0.276 0.724 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 0.223 -28.221 28.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.060 4.060 3 H 0.115 0.885 4 C -0.145 4.145 5 C 0.303 3.697 6 O -0.400 6.400 7 O -0.239 6.239 8 C -0.020 4.020 9 C 0.232 3.768 10 O -0.439 6.439 11 N -0.220 5.220 12 C -0.437 4.437 13 H 0.140 0.860 14 C -0.159 4.159 15 N -0.514 5.514 16 Si 0.705 3.295 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.194 1.194 20 C -0.120 4.120 21 C -0.073 4.073 22 C -0.178 4.178 23 C 0.106 3.894 24 F -0.111 7.111 25 C -0.210 4.210 26 C 0.116 3.884 27 F -0.105 7.105 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.206 0.794 36 H 0.086 0.914 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.986 -0.155 -28.028 28.187 hybrid contribution -0.574 1.566 0.078 1.670 sum -3.560 1.412 -27.951 28.212 Atomic orbital electron populations 1.22013 0.92775 1.02321 1.03782 1.19902 0.97469 0.99825 0.88770 0.88495 1.21450 1.04468 1.00123 0.88413 1.23611 0.76457 0.84312 0.85271 1.90629 1.37600 1.24545 1.87253 1.86563 1.71461 1.51631 1.14229 1.22748 1.00788 0.94436 0.84003 1.19210 0.86398 0.87637 0.83564 1.90603 1.43027 1.24023 1.86264 1.42042 1.50872 1.23413 1.05635 1.19422 1.33857 1.09245 0.81129 0.86009 1.25044 0.97623 0.98306 0.94959 1.69612 1.44678 1.39386 0.97704 0.86675 0.80864 0.83263 0.78676 1.19402 1.19941 1.19360 1.19939 0.99726 0.95167 0.97205 1.20824 0.97418 0.92737 0.96354 1.21240 1.00031 1.01720 0.94850 1.17316 0.97041 0.90272 0.84745 1.91540 1.87342 1.81499 1.50689 1.21025 1.05667 0.94640 0.99693 1.17136 0.97362 0.79178 0.94678 1.91544 1.90811 1.33560 1.94558 0.92257 0.92463 0.89949 0.87124 0.87197 0.89415 0.89403 0.79390 0.91377 0.83563 0.83787 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.75 37.16 0.33 -0.95 16 2 C -0.04 -0.36 2.19 -91.77 -0.20 -0.56 16 3 H 0.10 0.99 6.94 -51.93 -0.36 0.63 16 4 C -0.11 -1.00 5.03 -27.88 -0.14 -1.14 16 5 C 0.46 6.25 7.68 36.01 0.28 6.53 16 6 O -0.51 -7.64 13.72 -18.75 -0.26 -7.90 16 7 O -0.32 -5.49 9.75 -45.89 -0.45 -5.94 16 8 C 0.06 1.00 5.94 36.01 0.21 1.22 16 9 C 0.45 10.19 7.86 -10.98 -0.09 10.10 16 10 O -0.56 -15.13 16.08 -14.11 -0.23 -15.35 16 11 N -0.58 -13.60 5.09 -10.96 -0.06 -13.66 16 12 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 13 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 14 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 15 N -0.87 -24.98 13.96 55.50 0.77 -24.20 16 16 Si 0.88 18.89 27.74 -169.99 -4.71 14.17 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 20 C -0.12 -0.92 4.79 -104.54 -0.50 -1.42 16 21 C -0.06 -0.34 8.76 -39.60 -0.35 -0.68 16 22 C -0.16 -0.97 10.03 -39.50 -0.40 -1.37 16 23 C 0.13 0.93 7.30 -39.43 -0.29 0.64 16 24 F -0.13 -1.08 17.27 2.25 0.04 -1.04 16 25 C -0.19 -1.43 10.01 -39.45 -0.39 -1.82 16 26 C 0.14 1.15 7.25 -39.43 -0.29 0.86 16 27 F -0.13 -1.23 16.19 2.25 0.04 -1.20 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.38 7.39 -51.93 -0.38 0.00 16 30 H 0.08 0.87 5.96 -51.93 -0.31 0.56 16 31 H 0.11 0.81 7.57 -51.93 -0.39 0.42 16 32 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.36 8.13 -51.93 -0.42 0.93 16 34 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 35 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 36 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.15 0.60 7.16 -52.49 -0.38 0.23 16 38 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 39 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -33.26 346.89 -5.85 -39.11 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.15 Total: 6.99 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.07 Total: 3.80 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.72 Total: -37.86 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.93 Total: -29.20 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.08 Total: -2.24 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.17 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.26 -5.85 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751863213.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.734 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds