Wall clock time and date at job start Tue Mar 31 2020 15:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 O 1.20824 * 120.00141 * 0.02562 * 5 4 2 7 7 O 1.34226 * 119.99900 * 180.02562 * 5 4 2 8 8 C 1.45203 * 116.99798 * 179.97438 * 7 5 4 9 9 C 1.50710 * 109.46747 * 179.97438 * 8 7 5 10 10 O 1.21285 * 119.99966 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99577 * 179.97438 * 9 8 7 12 12 C 1.37096 * 119.99669 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00381 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99653 * 180.02562 * 12 11 9 15 15 N 1.31411 * 119.99943 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00294 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47062 * 90.00120 * 16 14 12 18 18 H 1.48497 * 109.47344 * 210.00183 * 16 14 12 19 19 H 1.48502 * 109.47165 * 330.00316 * 16 14 12 20 20 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 21 21 C 1.38232 * 119.98826 * 300.00602 * 20 2 1 22 22 C 1.38191 * 120.04687 * 179.97438 * 21 20 2 23 23 C 1.38497 * 120.02641 * 359.97176 * 22 21 20 24 24 F 1.35098 * 120.00963 * 179.97438 * 23 22 21 25 25 C 1.38389 * 119.97532 * 0.02562 * 23 22 21 26 26 C 1.38440 * 119.95130 * 359.76297 * 25 23 22 27 27 F 1.35103 * 120.01611 * 180.23341 * 26 25 23 28 28 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 29 29 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 31 31 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 32 32 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 33 33 H 1.08993 * 109.47391 * 299.99599 * 8 7 5 34 34 H 1.09000 * 109.47246 * 59.99772 * 8 7 5 35 35 H 0.96997 * 120.00193 * 0.02562 * 11 9 8 36 36 H 0.96997 * 120.00200 * 180.02562 * 15 14 12 37 37 H 1.07996 * 119.97848 * 359.97438 * 21 20 2 38 38 H 1.08005 * 119.98622 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.02709 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0133 1.0831 2.3637 7 8 1.9838 -0.3895 3.6951 8 6 1.5667 0.4116 4.8321 9 6 2.0368 -0.2416 6.1063 10 8 2.6614 -1.2802 6.0606 11 7 1.7631 0.3285 7.2965 12 6 2.1912 -0.2654 8.4556 13 1 2.7474 -1.1903 8.4151 14 6 1.9085 0.3221 9.6827 15 7 2.3192 -0.2469 10.7937 16 14 0.9459 1.9214 9.7529 17 1 -0.5059 1.6218 9.8423 18 1 1.3651 2.6994 10.9463 19 1 1.2131 2.7143 8.5261 20 6 2.0324 -0.7105 -1.2304 21 6 1.6982 -2.0339 -1.4488 22 6 2.1577 -2.6865 -2.5770 23 6 2.9532 -2.0149 -3.4903 24 9 3.4027 -2.6534 -4.5928 25 6 3.2884 -0.6900 -3.2727 26 6 2.8239 -0.0359 -2.1444 27 9 3.1464 1.2589 -1.9330 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2057 33 1 2.0005 1.4084 4.7529 34 1 0.4795 0.4883 4.8432 35 1 1.2632 1.1590 7.3330 36 1 2.1216 0.1630 11.6503 37 1 1.0775 -2.5583 -0.7374 38 1 1.8956 -3.7204 -2.7469 39 1 3.9090 -0.1656 -3.9841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751863213.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:39 Heat of formation + Delta-G solvation = -209.909429 kcal Electronic energy + Delta-G solvation = -26373.471213 eV Core-core repulsion = 21916.471851 eV Total energy + Delta-G solvation = -4456.999362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.06949 -50.00887 -41.78330 -40.39574 -39.99016 -37.74240 -36.11038 -35.99946 -33.86579 -31.82627 -31.11930 -30.13485 -28.82115 -26.40667 -24.99407 -24.04417 -22.59491 -21.53378 -20.99656 -20.50600 -19.36283 -18.88692 -18.30076 -17.81806 -17.77138 -17.29402 -17.01458 -16.80420 -16.71922 -16.35101 -16.15713 -16.03689 -15.51118 -15.35243 -15.08459 -14.83838 -14.67437 -14.30153 -14.21091 -14.02183 -13.76028 -13.54286 -13.14322 -12.99138 -12.94950 -12.66006 -12.46224 -12.25932 -12.20103 -12.00784 -11.84767 -11.76219 -11.58642 -11.40510 -10.60037 -10.34168 -10.07610 -9.64667 -8.46116 -6.09209 -0.11081 0.00453 1.14766 1.29724 1.33459 1.39653 1.47004 1.76281 2.20060 2.33666 2.80968 2.85456 3.08307 3.35090 3.45754 3.51689 3.73763 3.83380 3.90661 4.01360 4.03961 4.14221 4.15949 4.19346 4.38471 4.60368 4.65255 4.79884 4.85176 4.91547 4.98974 5.04450 5.09390 5.28383 5.32077 5.44488 5.53003 5.75370 5.85488 6.46823 6.68098 6.78094 7.25910 7.77918 8.70449 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029371 B = 0.002029 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.081547 B =13793.903691 C =14195.814555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.035 4.035 3 H 0.077 0.923 4 C -0.103 4.103 5 C 0.461 3.539 6 O -0.525 6.525 7 O -0.347 6.347 8 C 0.068 3.932 9 C 0.448 3.552 10 O -0.609 6.609 11 N -0.577 5.577 12 C -0.333 4.333 13 H 0.061 0.939 14 C -0.009 4.009 15 N -0.925 5.925 16 Si 0.961 3.039 17 H -0.254 1.254 18 H -0.273 1.273 19 H -0.232 1.232 20 C -0.120 4.120 21 C -0.050 4.050 22 C -0.151 4.151 23 C 0.114 3.886 24 F -0.139 7.139 25 C -0.194 4.194 26 C 0.117 3.883 27 F -0.140 7.140 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.393 0.607 36 H 0.282 0.718 37 H 0.173 0.827 38 H 0.167 0.833 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.111 1.316 -29.873 30.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.053 4.053 3 H 0.096 0.904 4 C -0.140 4.140 5 C 0.305 3.695 6 O -0.414 6.414 7 O -0.263 6.263 8 C -0.009 4.009 9 C 0.235 3.765 10 O -0.493 6.493 11 N -0.219 5.219 12 C -0.462 4.462 13 H 0.079 0.921 14 C -0.209 4.209 15 N -0.565 5.565 16 Si 0.781 3.219 17 H -0.178 1.178 18 H -0.197 1.197 19 H -0.155 1.155 20 C -0.121 4.121 21 C -0.068 4.068 22 C -0.170 4.170 23 C 0.095 3.905 24 F -0.117 7.117 25 C -0.214 4.214 26 C 0.098 3.902 27 F -0.118 7.118 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.229 0.771 36 H 0.092 0.908 37 H 0.190 0.810 38 H 0.185 0.815 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.827 0.954 -29.715 30.120 hybrid contribution 0.059 1.105 0.520 1.223 sum -4.769 2.059 -29.195 29.654 Atomic orbital electron populations 1.21985 0.92392 1.03459 1.02824 1.19781 0.97703 0.98895 0.88945 0.90435 1.21624 1.05262 1.00776 0.86318 1.24358 0.75777 0.84406 0.84912 1.90629 1.38300 1.25314 1.87168 1.86572 1.72256 1.52294 1.15153 1.22565 1.02380 0.94402 0.81578 1.20245 0.84473 0.86722 0.85075 1.90577 1.44955 1.26447 1.87355 1.41831 1.51230 1.24085 1.04738 1.19000 1.35104 1.08412 0.83653 0.92099 1.26099 0.98262 1.02926 0.93591 1.69780 1.46130 1.41842 0.98739 0.85415 0.79132 0.77193 0.80165 1.17835 1.19746 1.15544 1.19893 0.99853 0.95816 0.96575 1.21100 0.97068 0.91923 0.96672 1.21521 0.98722 1.02655 0.94065 1.17503 0.97656 0.90340 0.85001 1.91526 1.87536 1.81556 1.51121 1.21116 1.05688 0.94942 0.99619 1.17330 0.98460 0.78908 0.95551 1.91508 1.91101 1.34524 1.94715 0.92013 0.90293 0.92051 0.84433 0.86243 0.86915 0.86455 0.77113 0.90830 0.80977 0.81514 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.75 71.98 0.63 -1.55 16 2 C -0.03 -0.54 2.19 -11.54 -0.03 -0.57 16 3 H 0.08 1.52 6.94 -2.39 -0.02 1.51 16 4 C -0.10 -1.67 5.03 29.85 0.15 -1.52 16 5 C 0.46 11.60 7.68 71.24 0.55 12.14 16 6 O -0.52 -14.66 13.72 21.97 0.30 -14.36 16 7 O -0.35 -11.19 9.75 -45.03 -0.44 -11.63 16 8 C 0.07 2.21 5.94 71.24 0.42 2.63 16 9 C 0.45 20.34 7.86 87.66 0.69 21.03 16 10 O -0.61 -34.06 16.08 15.75 0.25 -33.81 16 11 N -0.58 -26.81 5.09 -306.98 -1.56 -28.37 16 12 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 13 H 0.06 4.15 7.39 -2.91 -0.02 4.13 16 14 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 15 N -0.93 -54.40 13.96 21.66 0.30 -54.10 16 16 Si 0.96 37.62 27.74 68.60 1.90 39.53 16 17 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 18 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.23 -7.67 6.52 99.48 0.65 -7.03 16 20 C -0.12 -1.61 4.79 -19.81 -0.09 -1.71 16 21 C -0.05 -0.44 8.76 22.26 0.19 -0.25 16 22 C -0.15 -1.40 10.03 22.32 0.22 -1.17 16 23 C 0.11 1.50 7.30 22.37 0.16 1.66 16 24 F -0.14 -2.09 17.27 44.97 0.78 -1.31 16 25 C -0.19 -2.74 10.01 22.35 0.22 -2.51 16 26 C 0.12 1.87 7.25 22.37 0.16 2.03 16 27 F -0.14 -2.73 16.19 44.97 0.73 -2.00 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.08 0.79 7.39 -2.39 -0.02 0.77 16 30 H 0.06 1.18 5.96 -2.39 -0.01 1.17 16 31 H 0.14 1.52 7.57 -2.39 -0.02 1.50 16 32 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 3.14 8.13 -2.39 -0.02 3.12 16 34 H 0.12 3.16 8.13 -2.39 -0.02 3.14 16 35 H 0.39 14.95 5.76 -92.71 -0.53 14.42 16 36 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.17 0.62 7.16 -2.91 -0.02 0.60 16 38 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 39 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -77.26 346.89 7.39 -69.87 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.52 Total: 24.24 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 4.61 Total: 11.94 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -1.26 Total: -82.47 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: 0.12 Total: -59.80 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 1.50 Total: -3.31 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 1.90 Total: 39.53 kcal Total: -77.26 7.39 -69.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751863213.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.039 kcal (2) G-P(sol) polarization free energy of solvation -77.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds