Wall clock time and date at job start Tue Mar 31 2020 14:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46845 * 2 1 4 4 C 1.52993 * 109.47192 * 179.97438 * 3 2 1 5 5 S 1.81401 * 109.47330 * 180.02562 * 4 3 2 6 6 C 1.81393 * 103.00320 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47292 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99814 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00087 * 179.97438 * 7 6 5 10 10 C 1.40093 * 120.00112 * 185.61151 * 9 7 6 11 11 C 1.38712 * 120.07411 * 34.07260 * 10 9 7 12 12 C 1.38188 * 120.02011 * 179.97438 * 11 10 9 13 13 C 1.38549 * 120.17548 * 0.02562 * 12 11 10 14 14 F 1.35096 * 119.92178 * 179.97438 * 13 12 11 15 15 C 1.38343 * 120.15584 * 0.02562 * 13 12 11 16 16 C 1.38735 * 119.97575 * 359.97438 * 15 13 12 17 17 O 1.35777 * 120.08743 * 180.29716 * 16 15 13 18 18 C 1.34800 * 117.00080 * 354.19171 * 17 16 15 19 19 H 1.08007 * 119.99887 * 354.52311 * 18 17 16 20 20 C 1.38630 * 120.00177 * 174.51703 * 18 17 16 21 21 N 1.31568 * 120.00297 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00299 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47160 * 90.00103 * 22 20 18 24 24 H 1.48497 * 109.47720 * 210.00149 * 22 20 18 25 25 H 1.48500 * 109.47146 * 330.00665 * 22 20 18 26 26 H 1.08997 * 109.47020 * 60.00283 * 1 2 3 27 27 H 1.09005 * 109.46257 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46744 * 299.99247 * 1 2 3 29 29 H 1.09001 * 109.47231 * 240.00806 * 2 1 3 30 30 H 1.09000 * 109.47530 * 119.99708 * 2 1 3 31 31 H 1.09007 * 109.46948 * 60.00241 * 3 2 1 32 32 H 1.09003 * 109.47259 * 300.00365 * 3 2 1 33 33 H 1.09001 * 109.46989 * 60.00742 * 4 3 2 34 34 H 1.08994 * 109.47504 * 300.00585 * 4 3 2 35 35 H 1.09007 * 109.47097 * 60.00127 * 6 5 4 36 36 H 1.08997 * 109.47472 * 300.00500 * 6 5 4 37 37 H 0.97001 * 120.00245 * 5.61242 * 9 7 6 38 38 H 1.07997 * 119.98691 * 359.97298 * 11 10 9 39 39 H 1.07996 * 119.90792 * 180.02562 * 12 11 10 40 40 H 1.08001 * 120.01082 * 180.02562 * 15 13 12 41 41 H 0.97003 * 120.00251 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 16 4.1745 3.1529 0.0014 6 6 5.9769 2.9486 0.0013 7 6 6.6361 4.3038 0.0013 8 8 5.9567 5.3087 0.0018 9 7 7.9805 4.3993 0.0017 10 6 8.5937 5.6533 0.1204 11 6 8.0084 6.6426 0.8967 12 6 8.6144 7.8790 1.0134 13 6 9.8068 8.1349 0.3559 14 9 10.3947 9.3456 0.4731 15 6 10.3964 7.1538 -0.4212 16 6 9.7935 5.9103 -0.5427 17 8 10.3732 4.9438 -1.2999 18 6 11.4689 5.2925 -2.0035 19 1 11.7955 6.3219 -2.0193 20 6 12.1765 4.3299 -2.7068 21 7 11.7784 3.0760 -2.6879 22 14 13.6952 4.8130 -3.6812 23 1 14.8954 4.7046 -2.8133 24 1 13.8443 3.9060 -4.8476 25 1 13.5535 6.2124 -4.1573 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8901 32 1 1.6766 1.9564 -0.8900 33 1 3.9336 0.9288 -0.8892 34 1 3.9330 0.9289 0.8907 35 1 6.2801 2.3975 -0.8890 36 1 6.2801 2.3967 0.8910 37 1 8.5236 3.5997 -0.0801 38 1 7.0787 6.4465 1.4101 39 1 8.1574 8.6478 1.6186 40 1 11.3262 7.3557 -0.9323 41 1 12.2733 2.4025 -3.1803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760784131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:26 Heat of formation + Delta-G solvation = -97.504193 kcal Electronic energy + Delta-G solvation = -24251.442931 eV Core-core repulsion = 20365.531001 eV Total energy + Delta-G solvation = -3885.911929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.29514 -40.12846 -38.60585 -36.38790 -35.93532 -34.15285 -32.46275 -30.71888 -30.37314 -29.40024 -27.79906 -25.55360 -24.28400 -22.64753 -21.77883 -21.39510 -20.14594 -18.40224 -17.99051 -16.99996 -16.83864 -16.07398 -15.98669 -15.64922 -15.29175 -15.01997 -14.98699 -14.50728 -14.32940 -13.92316 -13.89099 -13.76194 -13.62965 -13.44286 -13.22095 -12.76866 -12.68954 -12.30994 -12.17605 -11.79639 -11.68783 -11.56662 -11.42481 -11.10703 -11.01763 -10.92914 -10.76723 -10.57210 -9.98172 -9.89403 -9.82862 -9.48737 -9.00980 -7.95405 -7.68867 -7.18286 -6.65624 -4.23190 1.36942 1.73103 2.06583 2.46630 2.82137 3.03644 3.05092 3.09659 3.42652 3.81171 4.27276 4.47539 4.56100 4.75894 4.79422 4.83788 4.90666 4.91839 4.96938 5.05925 5.19569 5.20284 5.30381 5.44918 5.46770 5.52942 5.61536 5.70118 5.78621 5.89621 5.96435 5.99454 6.14806 6.45871 6.69513 6.85931 6.87001 6.97220 7.12744 7.56781 7.75253 7.80239 8.40369 8.80558 9.40648 10.51476 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.002727 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.858562 B =10264.079071 C =12383.224552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.102 4.102 4 C -0.108 4.108 5 S -0.184 6.184 6 C -0.126 4.126 7 C 0.526 3.474 8 O -0.514 6.514 9 N -0.645 5.645 10 C 0.059 3.941 11 C -0.047 4.047 12 C -0.228 4.228 13 C 0.132 3.868 14 F -0.150 7.150 15 C -0.258 4.258 16 C 0.160 3.840 17 O -0.168 6.168 18 C -0.392 4.392 19 H 0.095 0.905 20 C 0.043 3.957 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.266 1.266 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.416 0.584 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.059 -5.886 5.732 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.256 4.256 5 S 0.042 5.958 6 C -0.277 4.277 7 C 0.311 3.689 8 O -0.390 6.390 9 N -0.291 5.291 10 C -0.035 4.035 11 C -0.068 4.068 12 C -0.248 4.248 13 C 0.112 3.888 14 F -0.129 7.129 15 C -0.279 4.279 16 C 0.104 3.896 17 O -0.070 6.070 18 C -0.467 4.467 19 H 0.112 0.888 20 C -0.162 4.162 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.190 1.190 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.252 0.748 38 H 0.153 0.847 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.078 -4.697 5.586 15.857 hybrid contribution 2.117 -1.129 -0.593 2.472 sum -11.961 -5.826 4.993 14.210 Atomic orbital electron populations 1.21769 0.95535 1.01675 1.02048 1.21528 0.96064 0.96064 1.02247 1.21320 0.91839 0.97441 1.03519 1.23553 0.99894 0.97265 1.04936 1.87450 1.01030 1.09192 1.98081 1.23460 0.96948 0.99813 1.07449 1.19631 0.82278 0.89942 0.77026 1.90732 1.62834 1.37162 1.48275 1.43019 1.05782 1.08723 1.71529 1.16798 0.94437 0.87767 1.04481 1.20470 0.99027 0.91535 0.95744 1.20453 0.97339 0.98889 1.08127 1.17453 0.92606 0.80192 0.98514 1.91415 1.83926 1.42797 1.94768 1.20873 1.04787 0.93909 1.08297 1.18808 0.91847 0.88752 0.90236 1.83926 1.40068 1.32468 1.50572 1.21351 1.03322 0.95827 1.26250 0.88794 1.25289 0.98904 0.94598 0.97386 1.70001 1.38903 1.00812 1.39625 0.85675 0.79892 0.78923 0.78839 1.19690 1.20120 1.19002 0.92575 0.92676 0.92616 0.91803 0.91856 0.90955 0.90894 0.90060 0.90162 0.86892 0.87083 0.74773 0.84660 0.85806 0.83877 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.78 5.93 -26.73 -0.16 -0.94 16 3 C -0.10 -0.82 5.22 -26.73 -0.14 -0.96 16 4 C -0.11 -0.97 5.94 37.15 0.22 -0.75 16 5 S -0.18 -2.39 20.87 -107.50 -2.24 -4.63 16 6 C -0.13 -1.57 6.43 36.01 0.23 -1.34 16 7 C 0.53 8.85 7.58 -10.99 -0.08 8.77 16 8 O -0.51 -10.22 13.62 5.54 0.08 -10.15 16 9 N -0.65 -11.51 5.20 -9.71 -0.05 -11.56 16 10 C 0.06 1.21 6.28 -83.45 -0.52 0.69 16 11 C -0.05 -0.90 8.65 -39.42 -0.34 -1.24 16 12 C -0.23 -4.20 10.02 -39.49 -0.40 -4.59 16 13 C 0.13 2.62 7.29 -39.43 -0.29 2.33 16 14 F -0.15 -2.85 17.26 2.25 0.04 -2.82 16 15 C -0.26 -5.57 9.11 -39.36 -0.36 -5.93 16 16 C 0.16 3.64 6.66 -38.94 -0.26 3.38 16 17 O -0.17 -4.31 9.30 0.05 0.00 -4.31 16 18 C -0.39 -10.21 9.44 30.88 0.29 -9.92 16 19 H 0.09 2.31 5.30 -52.48 -0.28 2.03 16 20 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 21 N -0.86 -23.13 13.67 55.48 0.76 -22.37 16 22 Si 0.94 19.49 29.55 -169.99 -5.02 14.47 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.11 1.27 8.14 -51.92 -0.42 0.85 16 36 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.42 6.94 8.55 -40.82 -0.35 6.59 16 38 H 0.14 2.46 6.48 -52.49 -0.34 2.12 16 39 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 40 H 0.14 3.09 5.71 -52.49 -0.30 2.79 16 41 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -29.71 366.74 -7.92 -37.64 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.47 Total: 8.27 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.53 Total: -10.06 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.71 Total: -33.93 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.46 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.24 Total: -4.63 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.71 -7.92 -37.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760784131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.869 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds