Wall clock time and date at job start Tue Mar 31 2020 14:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46845 * 2 1 4 4 C 1.52993 * 109.47192 * 179.97438 * 3 2 1 5 5 S 1.81401 * 109.47330 * 180.02562 * 4 3 2 6 6 C 1.81393 * 103.00320 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47292 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99814 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00087 * 179.97438 * 7 6 5 10 10 C 1.40093 * 120.00112 * 185.61151 * 9 7 6 11 11 C 1.38712 * 120.07411 * 34.07260 * 10 9 7 12 12 C 1.38188 * 120.02011 * 179.97438 * 11 10 9 13 13 C 1.38549 * 120.17548 * 0.02562 * 12 11 10 14 14 F 1.35096 * 119.92178 * 179.97438 * 13 12 11 15 15 C 1.38343 * 120.15584 * 0.02562 * 13 12 11 16 16 C 1.38735 * 119.97575 * 359.97438 * 15 13 12 17 17 O 1.35777 * 120.08743 * 180.29716 * 16 15 13 18 18 C 1.34800 * 117.00080 * 354.19171 * 17 16 15 19 19 H 1.08007 * 119.99887 * 354.52311 * 18 17 16 20 20 C 1.38630 * 120.00177 * 174.51703 * 18 17 16 21 21 N 1.31568 * 120.00297 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00299 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47160 * 90.00103 * 22 20 18 24 24 H 1.48497 * 109.47720 * 210.00149 * 22 20 18 25 25 H 1.48500 * 109.47146 * 330.00665 * 22 20 18 26 26 H 1.08997 * 109.47020 * 60.00283 * 1 2 3 27 27 H 1.09005 * 109.46257 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46744 * 299.99247 * 1 2 3 29 29 H 1.09001 * 109.47231 * 240.00806 * 2 1 3 30 30 H 1.09000 * 109.47530 * 119.99708 * 2 1 3 31 31 H 1.09007 * 109.46948 * 60.00241 * 3 2 1 32 32 H 1.09003 * 109.47259 * 300.00365 * 3 2 1 33 33 H 1.09001 * 109.46989 * 60.00742 * 4 3 2 34 34 H 1.08994 * 109.47504 * 300.00585 * 4 3 2 35 35 H 1.09007 * 109.47097 * 60.00127 * 6 5 4 36 36 H 1.08997 * 109.47472 * 300.00500 * 6 5 4 37 37 H 0.97001 * 120.00245 * 5.61242 * 9 7 6 38 38 H 1.07997 * 119.98691 * 359.97298 * 11 10 9 39 39 H 1.07996 * 119.90792 * 180.02562 * 12 11 10 40 40 H 1.08001 * 120.01082 * 180.02562 * 15 13 12 41 41 H 0.97003 * 120.00251 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 16 4.1745 3.1529 0.0014 6 6 5.9769 2.9486 0.0013 7 6 6.6361 4.3038 0.0013 8 8 5.9567 5.3087 0.0018 9 7 7.9805 4.3993 0.0017 10 6 8.5937 5.6533 0.1204 11 6 8.0084 6.6426 0.8967 12 6 8.6144 7.8790 1.0134 13 6 9.8068 8.1349 0.3559 14 9 10.3947 9.3456 0.4731 15 6 10.3964 7.1538 -0.4212 16 6 9.7935 5.9103 -0.5427 17 8 10.3732 4.9438 -1.2999 18 6 11.4689 5.2925 -2.0035 19 1 11.7955 6.3219 -2.0193 20 6 12.1765 4.3299 -2.7068 21 7 11.7784 3.0760 -2.6879 22 14 13.6952 4.8130 -3.6812 23 1 14.8954 4.7046 -2.8133 24 1 13.8443 3.9060 -4.8476 25 1 13.5535 6.2124 -4.1573 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8901 32 1 1.6766 1.9564 -0.8900 33 1 3.9336 0.9288 -0.8892 34 1 3.9330 0.9289 0.8907 35 1 6.2801 2.3975 -0.8890 36 1 6.2801 2.3967 0.8910 37 1 8.5236 3.5997 -0.0801 38 1 7.0787 6.4465 1.4101 39 1 8.1574 8.6478 1.6186 40 1 11.3262 7.3557 -0.9323 41 1 12.2733 2.4025 -3.1803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760784131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:25 Heat of formation + Delta-G solvation = -113.426634 kcal Electronic energy + Delta-G solvation = -24252.133380 eV Core-core repulsion = 20365.531001 eV Total energy + Delta-G solvation = -3886.602378 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.86176 -41.66112 -40.21790 -38.06073 -36.52808 -35.64468 -34.33520 -31.90986 -31.11380 -30.97312 -29.28655 -27.40529 -24.93804 -24.21630 -23.34493 -22.07343 -21.53152 -20.18140 -19.60505 -18.45975 -18.28867 -17.22626 -17.07964 -16.96712 -16.68822 -16.57337 -16.31089 -15.97335 -15.50931 -15.47682 -15.21393 -15.03852 -14.86593 -14.55310 -14.21985 -14.08662 -13.86775 -13.62584 -13.44342 -13.31012 -13.04783 -12.62393 -12.39365 -12.36091 -12.16222 -12.13242 -11.76024 -11.69609 -11.48118 -11.30787 -11.00488 -10.87657 -10.83984 -9.60911 -8.84080 -8.66906 -8.53696 -6.19373 0.11317 0.41203 0.43657 1.36561 1.42782 1.46066 1.51367 1.58613 2.07108 2.14148 2.62267 3.02806 3.13014 3.41406 3.54561 3.85589 3.90946 3.94854 4.02577 4.14237 4.21885 4.24401 4.32027 4.37370 4.58784 4.60533 4.69891 4.86898 4.87348 4.95033 4.99050 5.07393 5.18953 5.25670 5.26466 5.30796 5.35479 5.47053 5.47645 5.90530 5.97619 6.36213 6.91088 7.01601 7.58554 8.66886 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.002727 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.858562 B =10264.079071 C =12383.224552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.101 4.101 4 C -0.090 4.090 5 S -0.244 6.244 6 C -0.111 4.111 7 C 0.525 3.475 8 O -0.545 6.545 9 N -0.647 5.647 10 C 0.061 3.939 11 C -0.049 4.049 12 C -0.204 4.204 13 C 0.126 3.874 14 F -0.144 7.144 15 C -0.264 4.264 16 C 0.133 3.867 17 O -0.200 6.200 18 C -0.416 4.416 19 H 0.098 0.902 20 C -0.007 4.007 21 N -0.904 5.904 22 Si 1.010 2.990 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.259 1.259 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.142 0.858 37 H 0.420 0.580 38 H 0.148 0.852 39 H 0.159 0.841 40 H 0.137 0.863 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.716 -6.121 6.461 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.139 4.139 4 C -0.238 4.238 5 S -0.017 6.017 6 C -0.262 4.262 7 C 0.313 3.687 8 O -0.423 6.423 9 N -0.292 5.292 10 C -0.034 4.034 11 C -0.069 4.069 12 C -0.224 4.224 13 C 0.106 3.894 14 F -0.122 7.122 15 C -0.285 4.285 16 C 0.080 3.920 17 O -0.105 6.105 18 C -0.492 4.492 19 H 0.115 0.885 20 C -0.207 4.207 21 N -0.540 5.540 22 Si 0.830 3.170 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.183 1.183 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.146 0.854 36 H 0.160 0.840 37 H 0.257 0.743 38 H 0.166 0.834 39 H 0.176 0.824 40 H 0.154 0.846 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.758 -4.917 6.342 16.799 hybrid contribution 2.107 -0.950 -0.662 2.404 sum -12.652 -5.867 5.681 15.058 Atomic orbital electron populations 1.21780 0.95217 1.02200 1.01935 1.21503 0.96314 0.94824 1.02821 1.21326 0.91239 0.98446 1.02935 1.23602 1.00114 0.93892 1.06161 1.87667 1.01979 1.13821 1.98283 1.23385 0.95989 0.97189 1.09612 1.20321 0.81520 0.91370 0.75510 1.90709 1.63314 1.38767 1.49514 1.43124 1.06420 1.08054 1.71613 1.17076 0.93706 0.89108 1.03530 1.20686 0.99315 0.91450 0.95468 1.20855 0.95980 0.99187 1.06340 1.17453 0.93147 0.80147 0.98683 1.91432 1.83914 1.42185 1.94703 1.20957 1.04780 0.94202 1.08576 1.19168 0.92884 0.88952 0.91038 1.83899 1.40804 1.33571 1.52271 1.21720 1.03854 0.96387 1.27193 0.88456 1.26359 1.01722 0.94477 0.98171 1.70102 1.40673 1.01892 1.41330 0.84692 0.76053 0.78803 0.77440 1.18764 1.19451 1.18339 0.92852 0.91833 0.92633 0.91406 0.91072 0.91368 0.91766 0.89139 0.88531 0.85428 0.84008 0.74268 0.83423 0.82379 0.84557 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.27 5.93 30.60 0.18 -1.09 16 3 C -0.10 -1.47 5.22 30.59 0.16 -1.31 16 4 C -0.09 -1.42 5.94 71.98 0.43 -1.00 16 5 S -0.24 -6.08 20.87 -56.49 -1.18 -7.26 16 6 C -0.11 -2.61 6.43 71.24 0.46 -2.15 16 7 C 0.53 17.27 7.58 87.66 0.66 17.94 16 8 O -0.55 -21.38 13.62 -3.08 -0.04 -21.42 16 9 N -0.65 -22.95 5.20 -303.03 -1.57 -24.52 16 10 C 0.06 2.47 6.28 38.23 0.24 2.71 16 11 C -0.05 -1.79 8.65 22.37 0.19 -1.59 16 12 C -0.20 -7.02 10.02 22.33 0.22 -6.80 16 13 C 0.13 4.82 7.29 22.37 0.16 4.98 16 14 F -0.14 -5.21 17.26 44.97 0.78 -4.43 16 15 C -0.26 -11.52 9.11 22.41 0.20 -11.31 16 16 C 0.13 6.18 6.66 22.69 0.15 6.34 16 17 O -0.20 -10.67 9.30 -22.74 -0.21 -10.89 16 18 C -0.42 -22.35 9.44 67.91 0.64 -21.71 16 19 H 0.10 4.94 5.30 -2.91 -0.02 4.93 16 20 C -0.01 -0.38 5.49 84.83 0.47 0.08 16 21 N -0.90 -49.94 13.67 21.61 0.30 -49.64 16 22 Si 1.01 40.28 29.55 68.60 2.03 42.30 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.42 14.12 8.55 -92.71 -0.79 13.33 16 38 H 0.15 5.10 6.48 -2.91 -0.02 5.08 16 39 H 0.16 4.39 8.06 -2.91 -0.02 4.36 16 40 H 0.14 6.03 5.71 -2.91 -0.02 6.01 16 41 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -65.45 366.74 5.25 -60.20 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.27 Total: 31.47 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.89 Total: -15.81 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -1.28 Total: -74.17 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.25 Total: -32.31 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.78 Total: -4.43 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: -6.08 SS G_CDS: -1.18 Total: -7.26 kcal Total: -65.45 5.25 -60.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760784131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.229 kcal (2) G-P(sol) polarization free energy of solvation -65.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds