Wall clock time and date at job start Tue Mar 31 2020 14:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 F 1.39910 * 109.47123 * 299.99224 * 16 14 13 18 18 F 1.39895 * 109.47604 * 59.99337 * 16 14 13 19 19 O 1.42905 * 109.46823 * 179.97438 * 16 14 13 20 20 C 1.35668 * 116.99710 * 179.97438 * 19 16 14 21 21 C 1.39072 * 119.88538 * 359.72130 * 20 19 16 22 22 C 1.37123 * 120.11397 * 179.72596 * 21 20 19 23 23 C 1.40038 * 119.88281 * 0.56907 * 22 21 20 24 24 C 1.46855 * 120.11336 * 179.68061 * 23 22 21 25 25 O 1.21289 * 120.00088 * 0.02573 * 24 23 22 26 26 C 1.40045 * 119.77070 * 359.70682 * 23 22 21 27 27 C 1.37118 * 119.88078 * 359.97438 * 26 23 22 28 28 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 29 29 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 30 30 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 32 32 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 33 33 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 35 35 H 1.08004 * 119.94409 * 0.02562 * 21 20 19 36 36 H 1.07999 * 120.05809 * 180.27678 * 22 21 20 37 37 H 1.08007 * 119.99551 * 180.02562 * 24 23 22 38 38 H 1.07999 * 120.05711 * 179.97438 * 26 23 22 39 39 H 1.07999 * 119.94067 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 9 0.0769 2.4089 3.6996 18 9 0.9241 4.3850 2.9272 19 8 -1.2885 3.8583 2.5298 20 6 -1.8025 4.5000 3.6090 21 6 -1.0450 4.6209 4.7690 22 6 -1.5577 5.2735 5.8606 23 6 -2.8510 5.8082 5.8099 24 6 -3.4078 6.5019 6.9784 25 8 -2.7471 6.6129 7.9895 26 6 -3.6117 5.6786 4.6413 27 6 -3.0871 5.0300 3.5531 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8770 0.4827 -2.1133 34 1 2.2720 2.1230 1.9979 35 1 -0.0493 4.2044 4.8086 36 1 -0.9670 5.3707 6.7595 37 1 -4.4056 6.9132 6.9374 38 1 -4.6098 6.0889 4.5973 39 1 -3.6728 4.9299 2.6512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762721593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:44 Heat of formation + Delta-G solvation = -171.287632 kcal Electronic energy + Delta-G solvation = -27938.053732 eV Core-core repulsion = 23482.729136 eV Total energy + Delta-G solvation = -4455.324595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.69939 -47.67179 -40.58165 -39.69677 -39.18409 -37.41263 -35.71169 -32.71475 -31.86030 -31.64952 -31.08550 -28.33082 -27.05651 -24.71262 -23.66518 -22.80376 -21.54629 -21.29838 -20.16318 -19.54293 -18.80894 -18.49771 -17.53775 -16.69385 -16.42407 -16.16206 -15.84843 -15.48173 -15.17344 -14.82350 -14.70832 -14.56725 -14.44883 -14.23225 -14.18042 -13.94230 -13.82203 -13.53011 -13.27910 -13.17124 -12.72197 -12.58747 -12.20730 -12.17048 -11.99536 -11.40252 -11.27545 -11.12689 -10.79741 -10.18108 -10.09833 -9.99328 -9.56705 -9.54830 -9.44876 -8.95422 -8.85684 -8.50192 -6.34187 -4.39445 0.23823 0.93817 1.74229 2.03956 2.28496 2.96287 3.13463 3.26510 3.28135 3.31068 3.36849 3.88594 4.18433 4.26332 4.33986 4.47475 4.48224 4.75265 4.84110 4.97912 4.98045 5.10985 5.55389 5.66479 5.76502 5.80039 5.84845 5.92198 5.95604 6.07683 6.40691 6.47780 6.56042 6.60785 6.70529 6.82582 7.03131 7.06541 7.23057 7.66394 8.14597 8.22455 8.63610 9.23174 10.77347 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.031612 B = 0.002800 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.517745 B = 9999.152441 C =10421.206517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.244 3.756 4 H 0.057 0.943 5 C -0.543 4.543 6 H 0.084 0.916 7 C 0.083 3.917 8 N -0.885 5.885 9 Si 0.881 3.119 10 H -0.273 1.273 11 H -0.259 1.259 12 H -0.291 1.291 13 N -0.666 5.666 14 C 0.503 3.497 15 O -0.484 6.484 16 C 0.427 3.573 17 F -0.177 7.177 18 F -0.175 7.175 19 O -0.283 6.283 20 C 0.147 3.853 21 C -0.210 4.210 22 C -0.017 4.017 23 C -0.228 4.228 24 C 0.387 3.613 25 O -0.465 6.465 26 C -0.031 4.031 27 C -0.148 4.148 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.270 0.730 34 H 0.404 0.596 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.144 0.856 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.961 7.263 11.508 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.142 3.858 4 H 0.075 0.925 5 C -0.580 4.580 6 H 0.102 0.898 7 C -0.122 4.122 8 N -0.521 5.521 9 Si 0.710 3.290 10 H -0.200 1.200 11 H -0.184 1.184 12 H -0.219 1.219 13 N -0.316 5.316 14 C 0.279 3.721 15 O -0.358 6.358 16 C 0.349 3.651 17 F -0.159 7.159 18 F -0.157 7.157 19 O -0.198 6.198 20 C 0.102 3.898 21 C -0.228 4.228 22 C -0.036 4.036 23 C -0.230 4.230 24 C 0.246 3.754 25 O -0.339 6.339 26 C -0.050 4.050 27 C -0.167 4.167 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.239 0.761 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.122 0.878 38 H 0.162 0.838 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.024 7.195 11.071 21.544 hybrid contribution 0.173 -0.507 -0.166 0.561 sum -16.850 6.688 10.905 21.156 Atomic orbital electron populations 1.21913 0.96812 0.99764 1.02063 1.22340 0.94441 0.99369 1.01893 1.19443 0.96475 0.88762 0.81148 0.92505 1.20940 0.87885 1.40790 1.08407 0.89786 1.24803 0.94923 0.94931 0.97563 1.69849 1.08675 1.43768 1.29811 0.86929 0.80938 0.80068 0.81026 1.19986 1.18370 1.21863 1.46198 1.12721 1.53382 1.19263 1.19215 0.84968 0.81755 0.86155 1.90810 1.50601 1.57400 1.36998 1.22443 0.78013 0.77896 0.86744 1.93161 1.95808 1.66117 1.60774 1.93172 1.68927 1.59077 1.94480 1.86686 1.28141 1.68342 1.36646 1.19439 0.93542 0.91242 0.85568 1.21541 1.01967 1.05700 0.93616 1.21109 0.93816 0.91068 0.97572 1.20935 0.96835 1.07427 0.97755 1.23916 0.91587 0.75245 0.84663 1.90542 1.62425 1.48396 1.32537 1.21090 0.99139 0.94053 0.90680 1.20336 0.93159 1.02160 1.01022 0.93343 0.92591 0.94252 0.92058 0.91701 0.91995 0.76085 0.84156 0.84238 0.87817 0.83810 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.52 37.16 0.32 -2.45 16 2 C -0.14 -2.93 5.11 -26.73 -0.14 -3.06 16 3 C 0.24 5.38 1.83 -69.08 -0.13 5.25 16 4 H 0.06 1.36 6.63 -51.93 -0.34 1.02 16 5 C -0.54 -13.83 9.31 -34.44 -0.32 -14.15 16 6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -25.16 13.96 55.43 0.77 -24.39 16 9 Si 0.88 20.49 24.41 -169.99 -4.15 16.34 16 10 H -0.27 -6.14 6.83 56.52 0.39 -5.76 16 11 H -0.26 -5.89 6.53 56.52 0.37 -5.52 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.67 -12.46 5.02 -54.93 -0.28 -12.74 16 14 C 0.50 9.11 5.91 -10.98 -0.06 9.04 16 15 O -0.48 -9.91 13.64 -14.35 -0.20 -10.10 16 16 C 0.43 6.56 2.05 36.01 0.07 6.63 16 17 F -0.18 -2.53 15.26 2.25 0.03 -2.49 16 18 F -0.18 -2.59 15.29 2.25 0.03 -2.56 16 19 O -0.28 -4.26 9.59 -38.62 -0.37 -4.63 16 20 C 0.15 1.85 6.50 -38.96 -0.25 1.60 16 21 C -0.21 -2.50 8.20 -39.68 -0.33 -2.82 16 22 C -0.02 -0.18 9.57 -39.31 -0.38 -0.56 16 23 C -0.23 -1.97 5.87 -105.06 -0.62 -2.59 16 24 C 0.39 2.90 11.44 34.22 0.39 3.29 16 25 O -0.47 -5.39 17.16 5.55 0.10 -5.30 16 26 C -0.03 -0.22 9.77 -39.31 -0.38 -0.61 16 27 C -0.15 -1.43 9.95 -39.68 -0.39 -1.82 16 28 H 0.05 0.89 5.65 -51.93 -0.29 0.59 16 29 H 0.05 1.09 7.85 -51.93 -0.41 0.68 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.33 3.22 -51.93 -0.17 1.16 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.40 6.74 8.54 -40.82 -0.35 6.39 16 35 H 0.14 1.70 5.07 -52.48 -0.27 1.44 16 36 H 0.14 1.37 7.64 -52.49 -0.40 0.97 16 37 H 0.11 0.33 8.06 -52.48 -0.42 -0.10 16 38 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -30.67 335.59 -5.25 -35.92 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -3.94 Total: 5.03 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.31 Total: -0.14 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.50 Total: -37.13 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.47 Total: -20.03 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.07 Total: -5.05 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.15 Total: 16.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.67 -5.25 -35.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762721593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.367 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds