Wall clock time and date at job start Tue Mar 31 2020 14:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 F 1.39910 * 109.47123 * 299.99224 * 16 14 13 18 18 F 1.39895 * 109.47604 * 59.99337 * 16 14 13 19 19 O 1.42905 * 109.46823 * 179.97438 * 16 14 13 20 20 C 1.35668 * 116.99710 * 179.97438 * 19 16 14 21 21 C 1.39072 * 119.88538 * 359.72130 * 20 19 16 22 22 C 1.37123 * 120.11397 * 179.72596 * 21 20 19 23 23 C 1.40038 * 119.88281 * 0.56907 * 22 21 20 24 24 C 1.46855 * 120.11336 * 179.68061 * 23 22 21 25 25 O 1.21289 * 120.00088 * 0.02573 * 24 23 22 26 26 C 1.40045 * 119.77070 * 359.70682 * 23 22 21 27 27 C 1.37118 * 119.88078 * 359.97438 * 26 23 22 28 28 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 29 29 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 30 30 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 32 32 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 33 33 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 35 35 H 1.08004 * 119.94409 * 0.02562 * 21 20 19 36 36 H 1.07999 * 120.05809 * 180.27678 * 22 21 20 37 37 H 1.08007 * 119.99551 * 180.02562 * 24 23 22 38 38 H 1.07999 * 120.05711 * 179.97438 * 26 23 22 39 39 H 1.07999 * 119.94067 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 9 0.0769 2.4089 3.6996 18 9 0.9241 4.3850 2.9272 19 8 -1.2885 3.8583 2.5298 20 6 -1.8025 4.5000 3.6090 21 6 -1.0450 4.6209 4.7690 22 6 -1.5577 5.2735 5.8606 23 6 -2.8510 5.8082 5.8099 24 6 -3.4078 6.5019 6.9784 25 8 -2.7471 6.6129 7.9895 26 6 -3.6117 5.6786 4.6413 27 6 -3.0871 5.0300 3.5531 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8770 0.4827 -2.1133 34 1 2.2720 2.1230 1.9979 35 1 -0.0493 4.2044 4.8086 36 1 -0.9670 5.3707 6.7595 37 1 -4.4056 6.9132 6.9374 38 1 -4.6098 6.0889 4.5973 39 1 -3.6728 4.9299 2.6512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762721593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:43 Heat of formation + Delta-G solvation = -191.623121 kcal Electronic energy + Delta-G solvation = -27938.935545 eV Core-core repulsion = 23482.729136 eV Total energy + Delta-G solvation = -4456.206408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.90500 -48.87619 -41.48269 -41.12402 -40.04005 -38.29767 -37.36431 -34.58901 -33.53838 -32.38674 -31.91859 -29.92994 -28.48174 -25.54081 -24.86741 -24.26120 -22.82971 -22.12517 -21.74992 -20.67660 -20.14449 -19.71192 -18.72749 -18.09089 -17.64371 -17.35156 -17.04161 -16.79508 -16.50205 -15.98740 -15.85988 -15.54357 -15.47183 -15.37755 -15.21585 -15.11403 -15.09044 -14.89208 -14.39630 -14.25986 -14.22172 -13.90209 -13.76828 -13.66418 -13.04473 -13.02845 -12.83814 -12.46904 -12.15293 -11.90545 -11.57207 -11.35135 -11.25021 -10.91586 -10.80945 -10.27120 -10.18257 -9.68273 -8.40834 -6.49294 -0.49332 0.20668 0.52402 0.80199 1.28562 1.36921 1.40441 1.45309 1.75180 2.04326 2.24209 2.65424 2.94035 2.95948 3.24277 3.35031 3.51136 3.63534 4.02382 4.15486 4.16327 4.24716 4.33404 4.35793 4.48574 4.70051 4.84374 4.89762 4.92664 5.01881 5.07092 5.09710 5.14902 5.19793 5.34384 5.37335 5.44268 5.78773 5.93096 6.31029 6.51048 6.51873 6.69189 7.17404 8.73979 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.031612 B = 0.002800 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.517745 B = 9999.152441 C =10421.206517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.250 3.750 4 H 0.040 0.960 5 C -0.541 4.541 6 H 0.058 0.942 7 C 0.033 3.967 8 N -0.930 5.930 9 Si 0.934 3.066 10 H -0.257 1.257 11 H -0.252 1.252 12 H -0.294 1.294 13 N -0.667 5.667 14 C 0.505 3.495 15 O -0.507 6.507 16 C 0.440 3.560 17 F -0.171 7.171 18 F -0.174 7.174 19 O -0.296 6.296 20 C 0.111 3.889 21 C -0.224 4.224 22 C -0.034 4.034 23 C -0.229 4.229 24 C 0.397 3.603 25 O -0.511 6.511 26 C -0.008 4.008 27 C -0.150 4.150 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.272 0.728 34 H 0.413 0.587 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.166 0.834 38 H 0.197 0.803 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.524 7.710 12.091 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.179 4.179 3 C 0.147 3.853 4 H 0.057 0.943 5 C -0.579 4.579 6 H 0.076 0.924 7 C -0.168 4.168 8 N -0.568 5.568 9 Si 0.761 3.239 10 H -0.182 1.182 11 H -0.177 1.177 12 H -0.221 1.221 13 N -0.317 5.317 14 C 0.283 3.717 15 O -0.382 6.382 16 C 0.362 3.638 17 F -0.152 7.152 18 F -0.155 7.155 19 O -0.212 6.212 20 C 0.067 3.933 21 C -0.242 4.242 22 C -0.052 4.052 23 C -0.230 4.230 24 C 0.259 3.741 25 O -0.387 6.387 26 C -0.026 4.026 27 C -0.168 4.168 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.249 0.751 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.182 0.818 38 H 0.215 0.785 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.608 7.650 11.686 24.896 hybrid contribution 1.228 -0.525 -0.230 1.355 sum -19.380 7.125 11.456 23.614 Atomic orbital electron populations 1.21824 0.95011 1.01369 1.01544 1.22265 0.95990 0.97739 1.01942 1.19123 0.94062 0.90103 0.82054 0.94250 1.21159 0.89708 1.39517 1.07470 0.92368 1.25545 0.95793 0.95624 0.99808 1.69967 1.10414 1.45565 1.30868 0.86062 0.79526 0.80165 0.78156 1.18215 1.17659 1.22099 1.45993 1.13530 1.53598 1.18611 1.19464 0.84216 0.81121 0.86941 1.90789 1.51144 1.58049 1.38182 1.21734 0.78768 0.77903 0.85359 1.93174 1.95865 1.65966 1.60236 1.93176 1.69048 1.58962 1.94358 1.86640 1.27333 1.69155 1.38076 1.19852 0.95077 0.93143 0.85208 1.21475 1.01744 1.06733 0.94268 1.21229 0.95243 0.91687 0.97051 1.21353 0.96021 1.06505 0.99155 1.24689 0.92980 0.73538 0.82858 1.90551 1.63970 1.50088 1.34095 1.21612 1.00668 0.91734 0.88571 1.20735 0.91951 1.01599 1.02549 0.93403 0.93586 0.91548 0.92828 0.90797 0.91865 0.75068 0.85420 0.84636 0.81835 0.78548 0.82179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 8.52 71.98 0.61 -4.35 16 2 C -0.14 -5.64 5.11 30.60 0.16 -5.49 16 3 C 0.25 11.05 1.83 44.24 0.08 11.13 16 4 H 0.04 1.90 6.63 -2.39 -0.02 1.89 16 5 C -0.54 -28.15 9.31 25.60 0.24 -27.91 16 6 H 0.06 3.26 7.98 -2.91 -0.02 3.23 16 7 C 0.03 1.78 5.45 84.65 0.46 2.24 16 8 N -0.93 -54.15 13.96 21.45 0.30 -53.85 16 9 Si 0.93 42.14 24.41 68.60 1.67 43.82 16 10 H -0.26 -10.83 6.83 99.48 0.68 -10.15 16 11 H -0.25 -11.02 6.53 99.48 0.65 -10.37 16 12 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 13 N -0.67 -25.16 5.02 -446.10 -2.24 -27.40 16 14 C 0.50 18.31 5.91 87.66 0.52 18.82 16 15 O -0.51 -20.64 13.64 16.03 0.22 -20.42 16 16 C 0.44 13.62 2.05 71.24 0.15 13.76 16 17 F -0.17 -4.90 15.26 44.97 0.69 -4.21 16 18 F -0.17 -5.26 15.29 44.97 0.69 -4.58 16 19 O -0.30 -8.86 9.59 -70.80 -0.68 -9.53 16 20 C 0.11 2.71 6.50 22.67 0.15 2.86 16 21 C -0.22 -5.36 8.20 22.21 0.18 -5.17 16 22 C -0.03 -0.69 9.57 22.44 0.21 -0.47 16 23 C -0.23 -3.29 5.87 -20.15 -0.12 -3.41 16 24 C 0.40 4.50 11.44 70.08 0.80 5.30 16 25 O -0.51 -10.93 17.16 -3.06 -0.05 -10.99 16 26 C -0.01 -0.08 9.77 22.44 0.22 0.14 16 27 C -0.15 -2.49 9.95 22.21 0.22 -2.26 16 28 H 0.05 1.68 5.65 -2.39 -0.01 1.67 16 29 H 0.04 1.71 7.85 -2.39 -0.02 1.69 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 2.23 3.22 -2.38 -0.01 2.22 16 32 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 33 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.41 14.03 8.54 -92.71 -0.79 13.24 16 35 H 0.13 3.25 5.07 -2.91 -0.01 3.23 16 36 H 0.14 2.75 7.64 -2.91 -0.02 2.73 16 37 H 0.17 -0.01 8.06 -2.91 -0.02 -0.03 16 38 H 0.20 -0.12 8.06 -2.91 -0.02 -0.15 16 39 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -69.15 335.59 4.72 -64.42 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.25 Total: 17.56 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 3.88 Total: 5.18 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.94 Total: -81.25 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.51 Total: -40.94 kcal Atomic # 9 Polarization: -10.16 SS G_CDS: 1.37 Total: -8.79 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.67 Total: 43.82 kcal Total: -69.15 4.72 -64.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762721593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.202 kcal (2) G-P(sol) polarization free energy of solvation -69.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds