Wall clock time and date at job start Tue Mar 31 2020 14:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31513 * 119.99969 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47167 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47028 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47377 * 330.00144 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 F 1.39899 * 109.47143 * 300.00023 * 16 14 13 18 18 F 1.39900 * 109.47140 * 59.99791 * 16 14 13 19 19 O 1.42893 * 109.46977 * 179.97438 * 16 14 13 20 20 C 1.35663 * 116.99788 * 180.02562 * 19 16 14 21 21 C 1.39080 * 119.88378 * 359.72753 * 20 19 16 22 22 C 1.37123 * 120.11082 * 179.72191 * 21 20 19 23 23 C 1.40040 * 119.88540 * 0.57470 * 22 21 20 24 24 C 1.46865 * 120.11194 * 179.68118 * 23 22 21 25 25 O 1.21291 * 119.99253 * 180.02562 * 24 23 22 26 26 C 1.40031 * 119.77137 * 359.69797 * 23 22 21 27 27 C 1.37120 * 119.88397 * 0.02562 * 26 23 22 28 28 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 29 29 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 0.96999 * 119.99716 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 35 35 H 1.07991 * 119.94576 * 359.97438 * 21 20 19 36 36 H 1.08001 * 120.05586 * 180.26896 * 22 21 20 37 37 H 1.07996 * 119.99657 * 0.02562 * 24 23 22 38 38 H 1.08002 * 120.05902 * 179.97438 * 26 23 22 39 39 H 1.07999 * 119.94497 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3364 9 14 3.0963 0.1102 2.5707 10 1 2.8744 -1.3258 2.2647 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 9 0.9240 4.3851 -2.9271 18 9 0.0769 2.4091 -3.6995 19 8 -1.2889 3.8574 -2.5301 20 6 -1.8030 4.4990 -3.6093 21 6 -1.0408 4.6307 -4.7652 22 6 -1.5579 5.2732 -5.8606 23 6 -2.8513 5.8078 -5.8100 24 6 -3.4074 6.5032 -6.9780 25 8 -4.5277 6.9658 -6.9316 26 6 -3.6123 5.6774 -4.6418 27 6 -3.0880 5.0281 -3.5538 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.8769 0.4828 2.1133 34 1 2.2720 2.1231 -1.9978 35 1 -0.0416 4.2226 -4.8015 36 1 -0.9669 5.3712 -6.7593 37 1 -2.8189 6.6025 -7.8780 38 1 -4.6101 6.0883 -4.5975 39 1 -3.6739 4.9273 -2.6522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762721594.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:46 Heat of formation + Delta-G solvation = -191.098088 kcal Electronic energy + Delta-G solvation = -27913.872883 eV Core-core repulsion = 23457.689242 eV Total energy + Delta-G solvation = -4456.183641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.87885 -48.84149 -41.48324 -41.11632 -40.04500 -38.29647 -37.35771 -34.57972 -33.53195 -32.47474 -31.82009 -29.92653 -28.50132 -25.58495 -24.70090 -24.25308 -23.00087 -22.09419 -21.74594 -20.66979 -20.07833 -19.68817 -18.63666 -18.06567 -17.68794 -17.60525 -16.95621 -16.65620 -16.47299 -15.97151 -15.85549 -15.60104 -15.44700 -15.33636 -15.19466 -15.10242 -15.06659 -14.87471 -14.41193 -14.28849 -14.22988 -13.89220 -13.75949 -13.62569 -13.04171 -13.02931 -12.83688 -12.46847 -12.16414 -11.90324 -11.56276 -11.34144 -11.24092 -10.90814 -10.81511 -10.28374 -10.17143 -9.68578 -8.40146 -6.48110 -0.50178 0.20177 0.53386 0.81989 1.28636 1.37425 1.39186 1.45342 1.75631 2.05070 2.24607 2.64449 2.94927 2.97966 3.27028 3.34526 3.54008 3.63949 3.98239 4.16023 4.19206 4.25140 4.28617 4.34427 4.50971 4.70796 4.82614 4.90463 4.91847 5.02074 5.04115 5.09945 5.15969 5.21556 5.32330 5.38184 5.44734 5.77594 5.94635 6.32375 6.49126 6.53333 6.71827 7.18616 8.74521 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.033669 B = 0.002752 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.430752 B =10173.578973 C =10552.587739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.141 4.141 3 C 0.249 3.751 4 H 0.038 0.962 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.034 3.966 8 N -0.929 5.929 9 Si 0.932 3.068 10 H -0.257 1.257 11 H -0.294 1.294 12 H -0.255 1.255 13 N -0.665 5.665 14 C 0.502 3.498 15 O -0.510 6.510 16 C 0.443 3.557 17 F -0.170 7.170 18 F -0.168 7.168 19 O -0.300 6.300 20 C 0.113 3.887 21 C -0.221 4.221 22 C -0.011 4.011 23 C -0.228 4.228 24 C 0.398 3.602 25 O -0.507 6.507 26 C -0.030 4.030 27 C -0.155 4.155 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.272 0.728 34 H 0.414 0.586 35 H 0.141 0.859 36 H 0.184 0.816 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.853 6.455 -16.132 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.179 4.179 3 C 0.146 3.854 4 H 0.055 0.945 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.167 4.167 8 N -0.567 5.567 9 Si 0.759 3.241 10 H -0.182 1.182 11 H -0.222 1.222 12 H -0.179 1.179 13 N -0.316 5.316 14 C 0.281 3.719 15 O -0.385 6.385 16 C 0.365 3.635 17 F -0.152 7.152 18 F -0.149 7.149 19 O -0.217 6.217 20 C 0.069 3.931 21 C -0.240 4.240 22 C -0.029 4.029 23 C -0.229 4.229 24 C 0.260 3.740 25 O -0.383 6.383 26 C -0.048 4.048 27 C -0.173 4.173 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.251 0.749 35 H 0.158 0.842 36 H 0.201 0.799 37 H 0.175 0.825 38 H 0.167 0.833 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.882 6.581 -15.167 22.244 hybrid contribution 0.747 -0.456 0.556 1.037 sum -14.134 6.126 -14.611 21.232 Atomic orbital electron populations 1.21827 0.95148 1.01311 1.01490 1.22261 0.95855 0.97802 1.01980 1.19112 0.94110 0.90059 0.82107 0.94455 1.21153 0.89640 1.39416 1.07461 0.92111 1.25510 0.95744 0.95663 0.99741 1.69958 1.10329 1.45585 1.30845 0.86095 0.79509 0.80190 0.78298 1.18234 1.22167 1.17875 1.45964 1.13505 1.53543 1.18582 1.19529 0.84210 0.81148 0.87057 1.90799 1.51228 1.58097 1.38395 1.21640 0.78558 0.77947 0.85336 1.93180 1.68886 1.58806 1.94308 1.93177 1.95837 1.65864 1.60013 1.86641 1.27580 1.69199 1.38238 1.19768 0.94507 0.92889 0.85896 1.21658 1.01740 1.06589 0.93978 1.21468 0.93282 0.90001 0.98128 1.21303 0.96834 1.06661 0.98136 1.24589 0.86602 0.72093 0.90696 1.90544 1.22843 1.39988 1.84906 1.21329 0.99967 0.92730 0.90796 1.20483 0.92864 1.02266 1.01703 0.93351 0.91596 0.93788 0.90611 0.92918 0.91886 0.74910 0.84176 0.79889 0.82454 0.83261 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 8.51 71.98 0.61 -4.37 16 2 C -0.14 -5.58 5.11 30.60 0.16 -5.42 16 3 C 0.25 10.90 1.83 44.25 0.08 10.98 16 4 H 0.04 1.80 6.63 -2.39 -0.02 1.78 16 5 C -0.54 -27.62 9.31 25.60 0.24 -27.38 16 6 H 0.06 3.33 7.98 -2.91 -0.02 3.30 16 7 C 0.03 1.83 5.45 84.65 0.46 2.29 16 8 N -0.93 -53.52 13.96 21.45 0.30 -53.22 16 9 Si 0.93 41.99 24.41 68.60 1.67 43.67 16 10 H -0.26 -10.82 6.83 99.48 0.68 -10.14 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.25 -11.17 6.53 99.48 0.65 -10.53 16 13 N -0.67 -24.41 5.02 -446.09 -2.24 -26.65 16 14 C 0.50 17.88 5.91 87.66 0.52 18.40 16 15 O -0.51 -20.87 13.64 16.01 0.22 -20.65 16 16 C 0.44 13.03 2.05 71.24 0.15 13.18 16 17 F -0.17 -4.72 15.26 44.97 0.69 -4.03 16 18 F -0.17 -4.38 15.29 44.97 0.69 -3.69 16 19 O -0.30 -9.00 9.59 -70.76 -0.68 -9.68 16 20 C 0.11 2.77 6.50 22.67 0.15 2.92 16 21 C -0.22 -4.35 8.20 22.21 0.18 -4.17 16 22 C -0.01 -0.14 9.77 22.44 0.22 0.08 16 23 C -0.23 -3.28 5.87 -20.15 -0.12 -3.40 16 24 C 0.40 4.54 11.44 70.08 0.80 5.34 16 25 O -0.51 -10.34 17.16 -3.07 -0.05 -10.39 16 26 C -0.03 -0.54 9.57 22.44 0.21 -0.32 16 27 C -0.15 -3.26 9.95 22.21 0.22 -3.04 16 28 H 0.05 1.70 5.64 -2.39 -0.01 1.68 16 29 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.04 1.65 7.85 -2.39 -0.02 1.63 16 31 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.05 2.18 3.22 -2.39 -0.01 2.18 16 33 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.41 13.39 8.54 -92.71 -0.79 12.60 16 35 H 0.14 2.74 5.07 -2.92 -0.01 2.73 16 36 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 37 H 0.16 0.19 8.06 -2.91 -0.02 0.16 16 38 H 0.15 2.41 7.64 -2.91 -0.02 2.38 16 39 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -66.92 335.59 4.73 -62.20 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.25 Total: 17.37 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 3.88 Total: 5.08 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.94 Total: -79.87 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -0.51 Total: -40.72 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 1.37 Total: -7.72 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.67 Total: 43.67 kcal Total: -66.92 4.73 -62.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762721594.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.903 kcal (2) G-P(sol) polarization free energy of solvation -66.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds