Wall clock time and date at job start Tue Mar 31 2020 15:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 C 1.50699 * 109.46813 * 239.99586 * 2 1 3 5 5 O 1.20826 * 120.00019 * 240.00277 * 4 2 1 6 6 O 1.34230 * 120.00245 * 60.00930 * 4 2 1 7 7 C 1.45199 * 116.99967 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.46757 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00263 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99919 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99960 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.46958 * 180.02562 * 11 10 8 13 13 H 1.08008 * 120.00101 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00069 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00234 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00391 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46995 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47403 * 119.99872 * 16 14 12 19 19 H 1.48500 * 109.47455 * 240.00082 * 16 14 12 20 20 C 1.50698 * 109.46867 * 120.00001 * 2 1 3 21 21 C 1.38415 * 120.02708 * 239.99837 * 20 2 1 22 22 F 1.35099 * 120.00946 * 359.97438 * 21 20 2 23 23 C 1.38474 * 119.97981 * 179.97438 * 21 20 2 24 24 C 1.38210 * 120.02023 * 0.28104 * 23 21 20 25 25 C 1.38201 * 120.05118 * 359.44081 * 24 23 21 26 26 C 1.38420 * 120.02535 * 59.97344 * 20 2 1 27 27 F 1.35097 * 120.01373 * 0.02562 * 26 20 2 28 28 H 1.09001 * 109.46748 * 60.00121 * 1 2 3 29 29 H 1.08996 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47040 * 300.00672 * 1 2 3 31 31 H 1.08997 * 109.46964 * 299.99175 * 7 6 4 32 32 H 1.09004 * 109.47328 * 59.99922 * 7 6 4 33 33 H 0.97000 * 120.00198 * 0.02562 * 10 8 7 34 34 H 1.08997 * 109.47108 * 299.99994 * 11 10 8 35 35 H 1.08998 * 109.47216 * 59.99956 * 11 10 8 36 36 H 0.96997 * 120.00818 * 180.02562 * 15 14 12 37 37 H 1.08002 * 119.98641 * 179.97438 * 23 21 20 38 38 H 1.08000 * 119.96986 * 179.70463 * 24 23 21 39 39 H 1.08002 * 119.98829 * 180.25980 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7269 -1.6929 -1.1195 6 8 1.7082 -0.2519 -2.4496 7 6 2.2277 -0.9859 -3.5896 8 6 1.7628 -0.3294 -4.8639 9 8 1.0622 0.6594 -4.8161 10 7 2.1256 -0.8412 -6.0568 11 6 1.6732 -0.2033 -7.2957 12 6 2.2125 -0.9650 -8.4789 13 1 2.8309 -1.8368 -8.3236 14 6 1.9175 -0.5484 -9.7596 15 7 1.1650 0.5135 -9.9488 16 14 2.5866 -1.4921 -11.2263 17 1 3.4000 -2.6388 -10.7478 18 1 1.4570 -1.9948 -12.0487 19 1 3.4355 -0.5926 -12.0483 20 6 2.0323 -0.7104 1.2305 21 6 2.8281 -0.0383 2.1420 22 9 3.1554 1.2550 1.9286 23 6 3.2887 -0.6919 3.2726 24 6 2.9587 -2.0166 3.4881 25 6 2.1595 -2.6871 2.5816 26 6 1.6977 -2.0355 1.4503 27 9 0.9211 -2.6927 0.5615 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.3172 -0.9848 -3.5565 32 1 1.8642 -2.0130 -3.5568 33 1 2.6857 -1.6322 -6.0952 34 1 0.5837 -0.2055 -7.3286 35 1 2.0356 0.8242 -7.3287 36 1 0.9571 0.8065 -10.8498 37 1 3.9100 -0.1677 3.9836 38 1 3.3223 -2.5269 4.3677 39 1 1.8988 -3.7210 2.7531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763830598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:34 Heat of formation + Delta-G solvation = -189.720321 kcal Electronic energy + Delta-G solvation = -26965.136018 eV Core-core repulsion = 22509.012121 eV Total energy + Delta-G solvation = -4456.123897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.43877 -49.32357 -40.82048 -39.30508 -38.65204 -36.45498 -34.82999 -34.25521 -32.41718 -30.72439 -30.21292 -29.10109 -26.75671 -25.23907 -23.38038 -23.23060 -22.43711 -20.62211 -19.94665 -18.54397 -18.28168 -17.59601 -17.26362 -16.69266 -16.61286 -16.25714 -15.98540 -15.86245 -15.62609 -15.37470 -15.08349 -14.80952 -14.74581 -14.40708 -14.15303 -13.45239 -13.21163 -13.10067 -12.76605 -12.70550 -12.55171 -12.40151 -12.25856 -12.00726 -11.93347 -11.75803 -11.32050 -10.99602 -10.95026 -10.71320 -10.56529 -10.35312 -9.43035 -9.38931 -9.18279 -9.15127 -8.79459 -7.99750 -6.20331 -4.27688 0.46987 0.56448 2.05180 2.33239 2.95537 3.16775 3.22008 3.29221 3.32280 3.46366 3.81844 3.90496 3.99328 4.20829 4.32328 4.33179 4.66978 4.68356 4.72822 4.84032 5.10760 5.15837 5.22841 5.28634 5.33417 5.34766 5.41189 5.46388 5.53800 5.63178 5.70385 5.89206 6.26942 6.32430 7.21738 7.29792 7.45034 7.56376 7.63809 7.91139 8.49034 8.70425 8.95452 9.38759 10.89846 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.028577 B = 0.002155 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.570010 B =12992.369845 C =13265.220728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 H 0.127 0.873 4 C 0.467 3.533 5 O -0.502 6.502 6 O -0.323 6.323 7 C 0.048 3.952 8 C 0.500 3.500 9 O -0.534 6.534 10 N -0.706 5.706 11 C 0.251 3.749 12 C -0.544 4.544 13 H 0.065 0.935 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.151 4.151 21 C 0.141 3.859 22 F -0.127 7.127 23 C -0.167 4.167 24 C -0.057 4.057 25 C -0.167 4.167 26 C 0.163 3.837 27 F -0.121 7.121 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.393 0.607 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 -5.062 29.479 30.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.059 4.059 3 H 0.145 0.855 4 C 0.309 3.691 5 O -0.389 6.389 6 O -0.237 6.237 7 C -0.029 4.029 8 C 0.283 3.717 9 O -0.411 6.411 10 N -0.357 5.357 11 C 0.131 3.869 12 C -0.583 4.583 13 H 0.083 0.917 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.733 3.267 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.153 4.153 21 C 0.122 3.878 22 F -0.105 7.105 23 C -0.186 4.186 24 C -0.075 4.075 25 C -0.186 4.186 26 C 0.144 3.856 27 F -0.099 7.099 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.226 0.774 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.342 -4.487 29.270 29.705 hybrid contribution 0.728 -0.857 -1.187 1.634 sum 3.070 -5.344 28.084 28.752 Atomic orbital electron populations 1.21896 0.90086 1.04172 1.04487 1.19746 0.99297 1.00689 0.86186 0.85497 1.23357 0.77723 0.82957 0.85041 1.90674 1.35430 1.25522 1.87286 1.86538 1.68847 1.54515 1.13834 1.22898 1.00365 0.96224 0.83420 1.19869 0.82048 0.85284 0.84512 1.90709 1.37569 1.25671 1.87146 1.46368 1.51792 1.31306 1.06198 1.19185 0.95886 0.93741 0.78123 1.21243 1.33229 1.13259 0.90535 0.91716 1.24957 0.94865 0.95091 0.99125 1.69980 1.36186 1.23706 1.22309 0.86334 0.78736 0.79681 0.81997 1.19609 1.20756 1.20765 1.19376 1.03544 0.94357 0.98011 1.17134 0.96561 0.79152 0.94983 1.91536 1.90602 1.33721 1.94672 1.21173 1.03793 0.96012 0.97648 1.20880 0.94923 0.93135 0.98591 1.21225 1.01318 1.01803 0.94234 1.17113 0.91769 0.88972 0.87791 1.91532 1.71415 1.80264 1.66730 0.89525 0.91134 0.90663 0.88501 0.88440 0.77418 0.95234 0.95234 0.92417 0.83757 0.83743 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.91 37.16 0.33 -1.12 16 2 C -0.04 -0.45 2.89 -92.92 -0.27 -0.72 16 3 H 0.13 1.28 7.13 -51.93 -0.37 0.91 16 4 C 0.47 6.70 6.70 36.01 0.24 6.95 16 5 O -0.50 -7.92 14.31 -18.75 -0.27 -8.19 16 6 O -0.32 -5.24 9.66 -45.90 -0.44 -5.68 16 7 C 0.05 0.76 5.94 36.01 0.21 0.97 16 8 C 0.50 10.14 7.91 -10.98 -0.09 10.05 16 9 O -0.53 -13.10 16.50 -14.11 -0.23 -13.33 16 10 N -0.71 -14.74 5.55 -61.47 -0.34 -15.08 16 11 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 12 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 13 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.88 -25.88 13.29 55.43 0.74 -25.15 16 16 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 C -0.15 -1.58 4.41 -104.49 -0.46 -2.04 16 21 C 0.14 1.29 7.25 -39.43 -0.29 1.01 16 22 F -0.13 -1.24 16.19 2.25 0.04 -1.20 16 23 C -0.17 -1.11 10.03 -39.50 -0.40 -1.51 16 24 C -0.06 -0.32 10.04 -39.61 -0.40 -0.72 16 25 C -0.17 -1.23 10.02 -39.51 -0.40 -1.63 16 26 C 0.16 1.68 6.14 -39.43 -0.24 1.43 16 27 F -0.12 -1.45 13.81 2.25 0.03 -1.42 16 28 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16 29 H 0.07 0.71 6.31 -51.93 -0.33 0.39 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 32 H 0.10 1.35 8.13 -51.93 -0.42 0.92 16 33 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -34.14 351.21 -6.78 -40.91 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.37 Total: 2.19 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -2.19 Total: 5.94 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.40 Total: -40.23 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.94 Total: -27.20 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.07 Total: -2.62 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.14 -6.78 -40.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763830598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.806 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds