Wall clock time and date at job start Tue Mar 31 2020 15:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 C 1.50699 * 109.46813 * 239.99586 * 2 1 3 5 5 O 1.20826 * 120.00019 * 240.00277 * 4 2 1 6 6 O 1.34230 * 120.00245 * 60.00930 * 4 2 1 7 7 C 1.45199 * 116.99967 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.46757 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00263 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99919 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99960 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.46958 * 180.02562 * 11 10 8 13 13 H 1.08008 * 120.00101 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00069 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00234 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00391 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46995 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47403 * 119.99872 * 16 14 12 19 19 H 1.48500 * 109.47455 * 240.00082 * 16 14 12 20 20 C 1.50698 * 109.46867 * 120.00001 * 2 1 3 21 21 C 1.38415 * 120.02708 * 239.99837 * 20 2 1 22 22 F 1.35099 * 120.00946 * 359.97438 * 21 20 2 23 23 C 1.38474 * 119.97981 * 179.97438 * 21 20 2 24 24 C 1.38210 * 120.02023 * 0.28104 * 23 21 20 25 25 C 1.38201 * 120.05118 * 359.44081 * 24 23 21 26 26 C 1.38420 * 120.02535 * 59.97344 * 20 2 1 27 27 F 1.35097 * 120.01373 * 0.02562 * 26 20 2 28 28 H 1.09001 * 109.46748 * 60.00121 * 1 2 3 29 29 H 1.08996 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47040 * 300.00672 * 1 2 3 31 31 H 1.08997 * 109.46964 * 299.99175 * 7 6 4 32 32 H 1.09004 * 109.47328 * 59.99922 * 7 6 4 33 33 H 0.97000 * 120.00198 * 0.02562 * 10 8 7 34 34 H 1.08997 * 109.47108 * 299.99994 * 11 10 8 35 35 H 1.08998 * 109.47216 * 59.99956 * 11 10 8 36 36 H 0.96997 * 120.00818 * 180.02562 * 15 14 12 37 37 H 1.08002 * 119.98641 * 179.97438 * 23 21 20 38 38 H 1.08000 * 119.96986 * 179.70463 * 24 23 21 39 39 H 1.08002 * 119.98829 * 180.25980 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7269 -1.6929 -1.1195 6 8 1.7082 -0.2519 -2.4496 7 6 2.2277 -0.9859 -3.5896 8 6 1.7628 -0.3294 -4.8639 9 8 1.0622 0.6594 -4.8161 10 7 2.1256 -0.8412 -6.0568 11 6 1.6732 -0.2033 -7.2957 12 6 2.2125 -0.9650 -8.4789 13 1 2.8309 -1.8368 -8.3236 14 6 1.9175 -0.5484 -9.7596 15 7 1.1650 0.5135 -9.9488 16 14 2.5866 -1.4921 -11.2263 17 1 3.4000 -2.6388 -10.7478 18 1 1.4570 -1.9948 -12.0487 19 1 3.4355 -0.5926 -12.0483 20 6 2.0323 -0.7104 1.2305 21 6 2.8281 -0.0383 2.1420 22 9 3.1554 1.2550 1.9286 23 6 3.2887 -0.6919 3.2726 24 6 2.9587 -2.0166 3.4881 25 6 2.1595 -2.6871 2.5816 26 6 1.6977 -2.0355 1.4503 27 9 0.9211 -2.6927 0.5615 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.3172 -0.9848 -3.5565 32 1 1.8642 -2.0130 -3.5568 33 1 2.6857 -1.6322 -6.0952 34 1 0.5837 -0.2055 -7.3286 35 1 2.0356 0.8242 -7.3287 36 1 0.9571 0.8065 -10.8498 37 1 3.9100 -0.1677 3.9836 38 1 3.3223 -2.5269 4.3677 39 1 1.8988 -3.7210 2.7531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763830598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:34 Heat of formation + Delta-G solvation = -210.979909 kcal Electronic energy + Delta-G solvation = -26966.057903 eV Core-core repulsion = 22509.012121 eV Total energy + Delta-G solvation = -4457.045782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.11330 -50.08608 -41.97711 -40.53918 -39.77496 -37.68344 -36.21310 -35.64404 -34.43950 -31.29946 -31.14822 -30.46256 -28.56448 -26.14207 -24.75716 -23.95790 -23.74861 -21.70214 -21.60116 -19.38529 -19.20790 -19.08563 -18.29991 -17.94299 -17.79695 -17.29009 -17.05812 -16.85609 -16.65388 -16.52643 -16.38524 -16.23626 -15.88616 -15.48723 -15.06175 -14.79011 -14.65144 -14.18205 -13.99497 -13.86777 -13.75866 -13.52375 -13.32058 -13.14506 -12.94257 -12.92005 -12.76875 -12.61671 -12.24021 -12.06439 -11.97338 -11.66450 -11.48624 -10.95818 -10.84753 -10.00312 -9.96407 -9.75487 -8.31159 -6.47820 -0.14165 -0.02760 0.93430 1.17599 1.43658 1.44013 1.50646 1.57839 2.27920 2.37409 2.54297 2.83433 3.04084 3.08020 3.34434 3.47027 3.61435 3.73323 3.83694 3.92903 3.98164 3.99504 4.11099 4.21866 4.61244 4.65810 4.76735 4.80975 4.97797 5.03592 5.05121 5.10010 5.15876 5.19615 5.19669 5.39170 5.60445 5.74917 5.80168 6.43730 6.60867 6.74340 7.17877 7.32343 8.81199 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.028577 B = 0.002155 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.570010 B =12992.369845 C =13265.220728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 H 0.133 0.867 4 C 0.467 3.533 5 O -0.516 6.516 6 O -0.342 6.342 7 C 0.059 3.941 8 C 0.501 3.499 9 O -0.582 6.582 10 N -0.698 5.698 11 C 0.266 3.734 12 C -0.556 4.556 13 H 0.086 0.914 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.986 3.014 17 H -0.253 1.253 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.169 4.169 21 C 0.124 3.876 22 F -0.136 7.136 23 C -0.159 4.159 24 C -0.043 4.043 25 C -0.165 4.165 26 C 0.134 3.866 27 F -0.139 7.139 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.412 0.588 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.269 0.731 37 H 0.171 0.829 38 H 0.186 0.814 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.537 -7.159 31.426 32.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.059 4.059 3 H 0.151 0.849 4 C 0.311 3.689 5 O -0.404 6.404 6 O -0.257 6.257 7 C -0.017 4.017 8 C 0.286 3.714 9 O -0.462 6.462 10 N -0.350 5.350 11 C 0.144 3.856 12 C -0.594 4.594 13 H 0.104 0.896 14 C -0.196 4.196 15 N -0.568 5.568 16 Si 0.809 3.191 17 H -0.177 1.177 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.171 4.171 21 C 0.104 3.896 22 F -0.114 7.114 23 C -0.177 4.177 24 C -0.061 4.061 25 C -0.183 4.183 26 C 0.114 3.886 27 F -0.118 7.118 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.249 0.751 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.078 0.922 37 H 0.189 0.811 38 H 0.203 0.797 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.153 -6.624 31.256 32.218 hybrid contribution 0.177 -0.187 -1.655 1.675 sum 4.329 -6.810 29.601 30.681 Atomic orbital electron populations 1.21869 0.89324 1.03931 1.04975 1.19846 0.99951 1.00762 0.85296 0.84886 1.23979 0.77203 0.82867 0.84894 1.90649 1.36195 1.26247 1.87320 1.86542 1.69407 1.55148 1.14621 1.22765 1.01651 0.96284 0.81050 1.20621 0.80656 0.84430 0.85664 1.90685 1.39631 1.27937 1.87950 1.46047 1.52051 1.31774 1.05097 1.18648 0.93612 0.92582 0.80773 1.21630 1.33282 1.13757 0.90707 0.89620 1.26063 0.94909 0.95954 1.02687 1.70135 1.37721 1.25684 1.23287 0.85092 0.78074 0.78465 0.77469 1.17665 1.20451 1.20468 1.19381 1.04874 0.94804 0.98012 1.17397 0.97194 0.79051 0.95941 1.91512 1.90738 1.34317 1.94847 1.21576 1.02906 0.96456 0.96807 1.21373 0.93147 0.92594 0.98993 1.21580 1.00712 1.02753 0.93282 1.17484 0.92947 0.89283 0.88852 1.91481 1.72123 1.80564 1.67589 0.90678 0.91704 0.88455 0.85886 0.85994 0.75129 0.98909 0.98907 0.92175 0.81102 0.79694 0.81859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.91 71.98 0.64 -2.22 16 2 C -0.04 -0.89 2.89 -12.29 -0.04 -0.93 16 3 H 0.13 2.75 7.13 -2.39 -0.02 2.73 16 4 C 0.47 13.41 6.70 71.24 0.48 13.89 16 5 O -0.52 -16.03 14.31 21.96 0.31 -15.72 16 6 O -0.34 -11.17 9.66 -45.07 -0.44 -11.61 16 7 C 0.06 1.82 5.94 71.24 0.42 2.24 16 8 C 0.50 20.66 7.91 87.66 0.69 21.35 16 9 O -0.58 -29.81 16.50 15.76 0.26 -29.55 16 10 N -0.70 -29.45 5.55 -466.78 -2.59 -32.04 16 11 C 0.27 14.53 5.43 85.63 0.46 14.99 16 12 C -0.56 -29.98 9.28 25.60 0.24 -29.75 16 13 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 14 C 0.00 0.20 5.46 84.65 0.46 0.66 16 15 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 16 Si 0.99 42.16 29.54 68.60 2.03 44.18 16 17 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 20 C -0.17 -3.42 4.41 -19.78 -0.09 -3.50 16 21 C 0.12 2.09 7.25 22.37 0.16 2.25 16 22 F -0.14 -2.54 16.19 44.97 0.73 -1.81 16 23 C -0.16 -1.62 10.03 22.32 0.22 -1.39 16 24 C -0.04 -0.32 10.04 22.25 0.22 -0.10 16 25 C -0.16 -2.02 10.02 22.32 0.22 -1.80 16 26 C 0.13 2.63 6.14 22.37 0.14 2.76 16 27 F -0.14 -3.33 13.81 44.97 0.62 -2.71 16 28 H 0.07 1.64 8.11 -2.39 -0.02 1.62 16 29 H 0.06 1.35 6.31 -2.39 -0.02 1.34 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.12 3.17 8.13 -2.39 -0.02 3.15 16 32 H 0.12 3.18 8.13 -2.38 -0.02 3.16 16 33 H 0.41 14.07 8.32 -92.71 -0.77 13.29 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 39 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -77.34 351.21 5.79 -71.55 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.34 Total: 14.76 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 4.25 Total: 18.47 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -2.31 Total: -87.57 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: 0.14 Total: -56.88 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 1.35 Total: -4.51 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -77.34 5.79 -71.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763830598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.430 kcal (2) G-P(sol) polarization free energy of solvation -77.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds