Wall clock time and date at job start Tue Mar 31 2020 15:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99818 * 2 1 4 4 C 1.53000 * 109.46696 * 196.18660 * 3 2 1 5 5 O 1.45195 * 109.47566 * 64.12011 * 4 3 2 6 6 C 1.34226 * 117.00144 * 180.02562 * 5 4 3 7 7 O 1.20821 * 120.00256 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00013 * 179.97438 * 6 5 4 9 9 S 1.81004 * 109.47246 * 179.97438 * 8 6 5 10 10 C 1.76201 * 100.00191 * 180.02562 * 9 8 6 11 11 H 1.08003 * 119.99680 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00251 * 180.02562 * 10 9 8 13 13 N 1.31628 * 119.99875 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00114 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47624 * 59.99691 * 14 12 10 16 16 H 1.48501 * 109.47090 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47362 * 299.99529 * 14 12 10 18 18 C 1.46903 * 110.99750 * 123.95074 * 2 1 3 19 19 C 1.50695 * 109.47375 * 66.04789 * 18 2 1 20 20 C 1.38241 * 119.97333 * 269.72668 * 19 18 2 21 21 C 1.38203 * 120.02669 * 179.72507 * 20 19 18 22 22 C 1.38464 * 119.96970 * 0.56678 * 21 20 19 23 23 F 1.35104 * 120.02563 * 179.68099 * 22 21 20 24 24 C 1.38458 * 119.95034 * 359.70698 * 22 21 20 25 25 C 1.38199 * 119.97372 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47283 * 54.32666 * 1 2 3 27 27 H 1.09003 * 109.46733 * 174.33268 * 1 2 3 28 28 H 1.09002 * 109.47123 * 294.32608 * 1 2 3 29 29 H 1.08996 * 109.46898 * 316.18176 * 3 2 1 30 30 H 1.08993 * 109.47452 * 76.18698 * 3 2 1 31 31 H 1.09006 * 109.47114 * 184.12160 * 4 3 2 32 32 H 1.09004 * 109.47091 * 304.11469 * 4 3 2 33 33 H 1.08998 * 109.47138 * 299.99772 * 8 6 5 34 34 H 1.09001 * 109.47565 * 60.00250 * 8 6 5 35 35 H 0.97002 * 120.00227 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.46508 * 186.04666 * 18 2 1 37 37 H 1.09005 * 109.47029 * 306.04468 * 18 2 1 38 38 H 1.07995 * 119.98947 * 359.97380 * 20 19 18 39 39 H 1.07996 * 120.01607 * 180.24859 * 21 20 19 40 40 H 1.08004 * 120.01624 * 179.97438 * 24 22 21 41 41 H 1.08001 * 119.98525 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4715 1.3510 -0.4021 5 8 3.5947 0.8732 -1.7676 6 6 4.8343 0.7944 -2.2762 7 8 5.7851 1.1146 -1.6029 8 6 5.0403 0.3065 -3.6871 9 16 6.8080 0.3152 -4.0765 10 6 6.7592 -0.2813 -5.7337 11 1 5.8122 -0.5249 -6.1923 12 6 7.9379 -0.4392 -6.4495 13 7 9.0921 -0.1428 -5.8905 14 14 7.8862 -1.0723 -8.2061 15 1 7.0799 -0.1472 -9.0423 16 1 9.2677 -1.1493 -8.7454 17 1 7.2700 -2.4232 -8.2275 18 6 1.9954 -0.7659 1.1377 19 6 1.6370 -2.2203 0.9730 20 6 0.4536 -2.7039 1.4993 21 6 0.1211 -4.0363 1.3441 22 6 0.9793 -4.8895 0.6712 23 9 0.6584 -6.1936 0.5244 24 6 2.1669 -4.4053 0.1495 25 6 2.4942 -3.0711 0.3003 26 1 -0.3634 0.5993 -0.8348 27 1 -0.3633 -1.0227 -0.1015 28 1 -0.3633 0.4233 0.9364 29 1 1.4334 1.9763 -0.7115 30 1 1.8966 1.7986 0.9979 31 1 3.8813 2.3587 -0.3315 32 1 4.0210 0.6877 0.2659 33 1 4.6522 -0.7076 -3.7812 34 1 4.5131 0.9631 -4.3793 35 1 9.9158 -0.2527 -6.3908 36 1 3.0797 -0.6610 1.1756 37 1 1.5611 -0.3871 2.0629 38 1 -0.2132 -2.0393 2.0285 39 1 -0.8053 -4.4129 1.7518 40 1 2.8373 -5.0700 -0.3751 41 1 3.4203 -2.6932 -0.1070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769071344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:25 Heat of formation + Delta-G solvation = -100.517302 kcal Electronic energy + Delta-G solvation = -24418.354536 eV Core-core repulsion = 20532.311948 eV Total energy + Delta-G solvation = -3886.042588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.09883 -40.07428 -39.61612 -37.56157 -35.84931 -32.46610 -31.96068 -31.43506 -30.45159 -29.09712 -27.11205 -25.54566 -24.46541 -23.26569 -22.23540 -21.28748 -20.54659 -17.92442 -17.87376 -17.13763 -16.85893 -16.56295 -16.06515 -15.96181 -15.75168 -15.30817 -14.85475 -14.82118 -14.71225 -14.07910 -14.03384 -13.80080 -13.55956 -13.36474 -12.86006 -12.78249 -12.54150 -12.35734 -12.34277 -12.06091 -11.91265 -11.52607 -11.27032 -11.16622 -11.06740 -11.04656 -10.80258 -10.35869 -9.94846 -9.88870 -9.35128 -9.08818 -8.91200 -8.56831 -8.33431 -6.57775 -6.25312 -3.97639 0.84331 0.98259 2.71016 2.73757 3.19819 3.23381 3.25998 3.29078 3.57482 3.76913 4.01847 4.17104 4.40214 4.41336 4.63084 4.67903 4.79362 4.87187 4.97509 5.02894 5.06773 5.10462 5.16925 5.25414 5.34589 5.36836 5.43188 5.53756 5.65260 5.66646 5.69339 5.75290 5.83741 5.85991 5.99496 6.13957 6.25348 6.60524 6.68330 6.71234 6.80849 7.57197 8.25782 8.32325 9.20172 10.82150 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.002701 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.762929 B =10363.078007 C =12069.419171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.530 5.530 3 C 0.056 3.944 4 C 0.070 3.930 5 O -0.344 6.344 6 C 0.477 3.523 7 O -0.494 6.494 8 C -0.127 4.127 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.075 0.925 12 C 0.075 3.925 13 N -0.868 5.868 14 Si 0.921 3.079 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.273 1.273 18 C 0.089 3.911 19 C -0.087 4.087 20 C -0.086 4.086 21 C -0.157 4.157 22 C 0.096 3.904 23 F -0.142 7.142 24 C -0.151 4.151 25 C -0.064 4.064 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.024 0.976 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.270 0.730 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.027 -2.229 16.530 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.254 5.254 3 C -0.072 4.072 4 C -0.005 4.005 5 O -0.261 6.261 6 C 0.319 3.681 7 O -0.380 6.380 8 C -0.275 4.275 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.093 0.907 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.747 3.253 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.038 4.038 19 C -0.087 4.087 20 C -0.105 4.105 21 C -0.176 4.176 22 C 0.076 3.924 23 F -0.121 7.121 24 C -0.170 4.170 25 C -0.083 4.083 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.525 -2.067 16.951 25.195 hybrid contribution -1.365 -0.616 -1.081 1.847 sum -19.890 -2.683 15.870 25.587 Atomic orbital electron populations 1.22470 0.86926 1.02840 1.00308 1.61923 1.08064 1.13023 1.42370 1.22218 0.94611 0.89777 1.00564 1.22990 0.96238 0.99762 0.81533 1.86592 1.31637 1.78009 1.29876 1.23301 0.80576 0.74672 0.89543 1.90657 1.41978 1.44622 1.60776 1.23271 1.08092 1.04710 0.91466 1.85379 0.94339 1.86637 1.17024 1.22809 0.96000 1.51233 0.98332 0.90658 1.24993 0.94462 0.94931 0.99101 1.70001 0.97748 1.45180 1.37393 0.86188 0.77411 0.79398 0.82320 1.19853 1.20805 1.19825 1.21148 1.01196 0.89729 0.91760 1.19747 0.94879 0.95365 0.98745 1.20878 0.96152 0.94470 0.99003 1.21070 1.00470 0.93975 1.02086 1.17761 0.95517 0.78401 1.00684 1.91500 1.92828 1.33684 1.94054 1.21235 0.96447 0.97099 1.02217 1.20998 0.99748 0.91837 0.95681 0.91075 0.90916 0.95745 0.89225 0.92421 0.90854 0.91385 0.87980 0.88083 0.92050 0.89430 0.93627 0.85430 0.84928 0.84489 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.09 60.07 0.55 0.72 16 2 N -0.53 -4.96 4.65 -244.37 -1.14 -6.10 16 3 C 0.06 0.49 5.37 -3.82 -0.02 0.47 16 4 C 0.07 0.82 5.61 37.16 0.21 1.03 16 5 O -0.34 -5.34 10.16 -39.25 -0.40 -5.74 16 6 C 0.48 9.06 7.97 36.01 0.29 9.35 16 7 O -0.49 -10.68 15.61 -18.75 -0.29 -10.98 16 8 C -0.13 -2.61 6.27 36.01 0.23 -2.38 16 9 S -0.06 -1.60 20.58 -107.50 -2.21 -3.82 16 10 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 11 H 0.08 2.01 7.80 -52.48 -0.41 1.60 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -25.82 13.22 55.49 0.73 -25.09 16 14 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 18 C 0.09 0.75 4.97 -4.98 -0.02 0.72 16 19 C -0.09 -0.79 4.87 -104.62 -0.51 -1.30 16 20 C -0.09 -0.68 8.02 -39.59 -0.32 -1.00 16 21 C -0.16 -1.34 10.03 -39.51 -0.40 -1.74 16 22 C 0.10 0.98 7.30 -39.42 -0.29 0.70 16 23 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 24 C -0.15 -1.55 10.03 -39.51 -0.40 -1.95 16 25 C -0.06 -0.66 9.70 -39.59 -0.38 -1.04 16 26 H 0.07 0.53 7.96 -51.93 -0.41 0.11 16 27 H 0.07 0.57 6.29 -51.93 -0.33 0.25 16 28 H 0.02 0.15 8.13 -51.93 -0.42 -0.27 16 29 H 0.09 0.75 7.87 -51.93 -0.41 0.34 16 30 H 0.06 0.38 8.05 -51.93 -0.42 -0.04 16 31 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.07 0.80 6.48 -51.93 -0.34 0.47 16 33 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 34 H 0.10 1.93 8.14 -51.91 -0.42 1.51 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.09 0.78 6.30 -51.93 -0.33 0.45 16 37 H 0.05 0.31 8.05 -51.93 -0.42 -0.11 16 38 H 0.13 0.72 8.04 -52.49 -0.42 0.30 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -33.03 368.46 -9.18 -42.22 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.57 Total: -1.51 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.87 Total: -9.19 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: -0.40 Total: -31.19 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.69 Total: -16.71 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.03 -9.18 -42.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769071344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.302 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds