Wall clock time and date at job start Tue Mar 31 2020 15:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99818 * 2 1 4 4 C 1.53000 * 109.46696 * 196.18660 * 3 2 1 5 5 O 1.45195 * 109.47566 * 64.12011 * 4 3 2 6 6 C 1.34226 * 117.00144 * 180.02562 * 5 4 3 7 7 O 1.20821 * 120.00256 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00013 * 179.97438 * 6 5 4 9 9 S 1.81004 * 109.47246 * 179.97438 * 8 6 5 10 10 C 1.76201 * 100.00191 * 180.02562 * 9 8 6 11 11 H 1.08003 * 119.99680 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00251 * 180.02562 * 10 9 8 13 13 N 1.31628 * 119.99875 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00114 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47624 * 59.99691 * 14 12 10 16 16 H 1.48501 * 109.47090 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47362 * 299.99529 * 14 12 10 18 18 C 1.46903 * 110.99750 * 123.95074 * 2 1 3 19 19 C 1.50695 * 109.47375 * 66.04789 * 18 2 1 20 20 C 1.38241 * 119.97333 * 269.72668 * 19 18 2 21 21 C 1.38203 * 120.02669 * 179.72507 * 20 19 18 22 22 C 1.38464 * 119.96970 * 0.56678 * 21 20 19 23 23 F 1.35104 * 120.02563 * 179.68099 * 22 21 20 24 24 C 1.38458 * 119.95034 * 359.70698 * 22 21 20 25 25 C 1.38199 * 119.97372 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47283 * 54.32666 * 1 2 3 27 27 H 1.09003 * 109.46733 * 174.33268 * 1 2 3 28 28 H 1.09002 * 109.47123 * 294.32608 * 1 2 3 29 29 H 1.08996 * 109.46898 * 316.18176 * 3 2 1 30 30 H 1.08993 * 109.47452 * 76.18698 * 3 2 1 31 31 H 1.09006 * 109.47114 * 184.12160 * 4 3 2 32 32 H 1.09004 * 109.47091 * 304.11469 * 4 3 2 33 33 H 1.08998 * 109.47138 * 299.99772 * 8 6 5 34 34 H 1.09001 * 109.47565 * 60.00250 * 8 6 5 35 35 H 0.97002 * 120.00227 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.46508 * 186.04666 * 18 2 1 37 37 H 1.09005 * 109.47029 * 306.04468 * 18 2 1 38 38 H 1.07995 * 119.98947 * 359.97380 * 20 19 18 39 39 H 1.07996 * 120.01607 * 180.24859 * 21 20 19 40 40 H 1.08004 * 120.01624 * 179.97438 * 24 22 21 41 41 H 1.08001 * 119.98525 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4715 1.3510 -0.4021 5 8 3.5947 0.8732 -1.7676 6 6 4.8343 0.7944 -2.2762 7 8 5.7851 1.1146 -1.6029 8 6 5.0403 0.3065 -3.6871 9 16 6.8080 0.3152 -4.0765 10 6 6.7592 -0.2813 -5.7337 11 1 5.8122 -0.5249 -6.1923 12 6 7.9379 -0.4392 -6.4495 13 7 9.0921 -0.1428 -5.8905 14 14 7.8862 -1.0723 -8.2061 15 1 7.0799 -0.1472 -9.0423 16 1 9.2677 -1.1493 -8.7454 17 1 7.2700 -2.4232 -8.2275 18 6 1.9954 -0.7659 1.1377 19 6 1.6370 -2.2203 0.9730 20 6 0.4536 -2.7039 1.4993 21 6 0.1211 -4.0363 1.3441 22 6 0.9793 -4.8895 0.6712 23 9 0.6584 -6.1936 0.5244 24 6 2.1669 -4.4053 0.1495 25 6 2.4942 -3.0711 0.3003 26 1 -0.3634 0.5993 -0.8348 27 1 -0.3633 -1.0227 -0.1015 28 1 -0.3633 0.4233 0.9364 29 1 1.4334 1.9763 -0.7115 30 1 1.8966 1.7986 0.9979 31 1 3.8813 2.3587 -0.3315 32 1 4.0210 0.6877 0.2659 33 1 4.6522 -0.7076 -3.7812 34 1 4.5131 0.9631 -4.3793 35 1 9.9158 -0.2527 -6.3908 36 1 3.0797 -0.6610 1.1756 37 1 1.5611 -0.3871 2.0629 38 1 -0.2132 -2.0393 2.0285 39 1 -0.8053 -4.4129 1.7518 40 1 2.8373 -5.0700 -0.3751 41 1 3.4203 -2.6932 -0.1070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769071344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:24 Heat of formation + Delta-G solvation = -119.671969 kcal Electronic energy + Delta-G solvation = -24419.185144 eV Core-core repulsion = 20532.311948 eV Total energy + Delta-G solvation = -3886.873196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -49.90833 -41.39987 -40.39936 -38.39515 -37.12586 -34.60225 -32.75599 -32.13349 -31.63318 -30.29359 -27.77466 -27.67999 -25.26722 -23.96937 -23.08130 -22.42312 -21.46900 -19.88064 -18.66843 -18.58886 -17.84198 -17.37019 -17.21688 -16.91224 -16.88333 -16.62319 -16.30795 -15.96269 -15.69313 -15.40827 -14.85202 -14.61501 -14.49525 -14.42626 -14.28367 -14.02917 -13.58233 -13.33380 -13.19368 -13.11434 -12.95740 -12.86834 -12.65411 -12.63585 -12.28883 -12.03376 -11.89989 -11.78827 -11.54218 -11.48280 -11.13716 -10.36560 -10.05506 -9.63085 -9.19417 -8.71788 -8.36459 -6.15768 0.11573 0.28015 1.08454 1.21168 1.42113 1.45008 1.54428 1.98565 2.25192 2.50358 2.98382 3.10425 3.28994 3.29193 3.70401 3.75276 3.82496 3.97126 4.05816 4.06790 4.18159 4.21981 4.28696 4.38014 4.46230 4.47974 4.56717 4.66089 4.73860 4.76567 4.82568 4.97531 5.05233 5.12815 5.16183 5.26803 5.38656 5.41762 5.55427 5.91049 6.07324 6.11243 6.18825 6.80127 7.05214 8.72537 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.002701 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.762929 B =10363.078007 C =12069.419171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.554 5.554 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.336 6.336 6 C 0.487 3.513 7 O -0.526 6.526 8 C -0.108 4.108 9 S -0.137 6.137 10 C -0.549 4.549 11 H 0.084 0.916 12 C 0.017 3.983 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.262 1.262 16 H -0.278 1.278 17 H -0.263 1.263 18 C 0.091 3.909 19 C -0.088 4.088 20 C -0.078 4.078 21 C -0.153 4.153 22 C 0.075 3.925 23 F -0.152 7.152 24 C -0.164 4.164 25 C -0.082 4.082 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.273 0.727 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.135 0.865 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.735 -1.812 16.836 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.063 4.063 4 C -0.013 4.013 5 O -0.253 6.253 6 C 0.330 3.670 7 O -0.415 6.415 8 C -0.256 4.256 9 S 0.090 5.910 10 C -0.697 4.697 11 H 0.102 0.898 12 C -0.188 4.188 13 N -0.546 5.546 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.203 1.203 17 H -0.187 1.187 18 C -0.036 4.036 19 C -0.089 4.089 20 C -0.096 4.096 21 C -0.171 4.171 22 C 0.056 3.944 23 F -0.130 7.130 24 C -0.183 4.183 25 C -0.101 4.101 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.176 0.824 39 H 0.172 0.828 40 H 0.153 0.847 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.269 -1.647 17.272 27.449 hybrid contribution -0.636 -0.709 -1.045 1.413 sum -21.905 -2.356 16.228 27.363 Atomic orbital electron populations 1.22463 0.85644 1.02761 1.01436 1.61852 1.09358 1.13390 1.43226 1.22208 0.92000 0.89892 1.02205 1.23417 0.98963 0.99760 0.79157 1.86567 1.29101 1.77521 1.32095 1.22900 0.81279 0.74019 0.88799 1.90649 1.43239 1.46204 1.61412 1.23056 1.03236 1.06173 0.93180 1.85466 1.00800 1.86952 1.17738 1.23164 0.96683 1.51262 0.98586 0.89767 1.26096 0.93871 0.94854 1.04008 1.70155 0.98585 1.46434 1.39426 0.85008 0.77746 0.79125 0.76172 1.18623 1.20296 1.18724 1.21139 1.00755 0.89169 0.92563 1.19923 0.95057 0.95696 0.98220 1.21165 0.95798 0.94497 0.98168 1.21366 1.00749 0.94017 1.01015 1.17997 0.96137 0.78400 1.01869 1.91471 1.92908 1.34387 1.94270 1.21300 0.96903 0.97331 1.02779 1.21015 1.00018 0.92171 0.96847 0.91109 0.91389 0.93621 0.88587 0.89361 0.90380 0.91607 0.86583 0.86359 0.91850 0.90530 0.91247 0.82438 0.82755 0.84673 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.09 127.69 1.16 1.45 16 2 N -0.55 -8.92 4.65 -927.04 -4.31 -13.23 16 3 C 0.06 0.93 5.37 86.30 0.46 1.39 16 4 C 0.06 1.35 5.61 71.98 0.40 1.76 16 5 O -0.34 -10.06 10.16 -51.37 -0.52 -10.58 16 6 C 0.49 18.40 7.97 71.24 0.57 18.96 16 7 O -0.53 -23.08 15.61 21.98 0.34 -22.73 16 8 C -0.11 -4.39 6.27 71.24 0.45 -3.95 16 9 S -0.14 -7.45 20.58 -56.49 -1.16 -8.61 16 10 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 11 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 12 C 0.02 0.95 5.49 84.86 0.47 1.42 16 13 N -0.91 -55.11 13.22 21.65 0.29 -54.82 16 14 Si 1.00 43.27 29.55 68.60 2.03 45.29 16 15 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 18 C 0.09 1.32 4.97 85.55 0.42 1.74 16 19 C -0.09 -1.47 4.87 -19.86 -0.10 -1.57 16 20 C -0.08 -1.01 8.02 22.26 0.18 -0.84 16 21 C -0.15 -2.31 10.03 22.32 0.22 -2.08 16 22 C 0.08 1.52 7.30 22.38 0.16 1.69 16 23 F -0.15 -3.39 17.27 44.97 0.78 -2.62 16 24 C -0.16 -3.47 10.03 22.31 0.22 -3.25 16 25 C -0.08 -1.69 9.70 22.26 0.22 -1.48 16 26 H 0.07 0.84 7.96 -2.39 -0.02 0.82 16 27 H 0.07 0.87 6.29 -2.39 -0.02 0.86 16 28 H 0.05 0.35 8.13 -2.39 -0.02 0.33 16 29 H 0.10 1.30 7.87 -2.39 -0.02 1.28 16 30 H 0.09 0.80 8.05 -2.39 -0.02 0.78 16 31 H 0.08 1.67 8.13 -2.38 -0.02 1.65 16 32 H 0.07 1.50 6.48 -2.39 -0.02 1.49 16 33 H 0.12 4.39 8.14 -2.40 -0.02 4.37 16 34 H 0.12 4.40 8.14 -2.40 -0.02 4.38 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.08 1.27 6.30 -2.39 -0.02 1.26 16 37 H 0.07 0.68 8.05 -2.38 -0.02 0.66 16 38 H 0.16 1.10 8.04 -2.91 -0.02 1.07 16 39 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -72.74 368.46 3.96 -68.78 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.03 Total: 13.73 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 5.49 Total: -15.21 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -4.02 Total: -68.05 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.18 Total: -33.31 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -1.16 Total: -8.61 kcal Total: -72.74 3.96 -68.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769071344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.896 kcal (2) G-P(sol) polarization free energy of solvation -72.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds