Wall clock time and date at job start Tue Mar 31 2020 15:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81394 * 102.99994 * 2 1 4 4 H 1.08991 * 109.47424 * 55.00008 * 3 2 1 5 5 C 1.52995 * 109.47200 * 294.99878 * 3 2 1 6 6 C 1.53006 * 109.46930 * 175.00137 * 3 2 1 7 7 C 1.53004 * 109.47026 * 294.99796 * 6 3 2 8 8 C 1.50697 * 109.47091 * 180.02562 * 7 6 3 9 9 O 1.21294 * 119.99883 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99878 * 180.02562 * 8 7 6 11 11 C 1.40095 * 120.00013 * 174.43935 * 10 8 7 12 12 C 1.38713 * 120.07427 * 335.19442 * 11 10 8 13 13 C 1.38193 * 120.01745 * 179.69847 * 12 11 10 14 14 C 1.38554 * 120.17372 * 0.60027 * 13 12 11 15 15 F 1.35106 * 119.91729 * 179.70279 * 14 13 12 16 16 C 1.38339 * 120.15464 * 359.67075 * 14 13 12 17 17 C 1.38741 * 119.98180 * 0.03369 * 16 14 13 18 18 O 1.35769 * 120.09168 * 180.02562 * 17 16 14 19 19 C 1.34808 * 117.00029 * 5.16314 * 18 17 16 20 20 H 1.08011 * 119.99621 * 354.97907 * 19 18 17 21 21 C 1.38634 * 120.00245 * 174.97936 * 19 18 17 22 22 N 1.31572 * 119.99936 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00198 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47016 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46942 * 120.00022 * 23 21 19 26 26 H 1.48498 * 109.47329 * 240.00613 * 23 21 19 27 27 H 1.08994 * 109.46905 * 299.99865 * 1 2 3 28 28 H 1.09001 * 109.46904 * 60.00462 * 1 2 3 29 29 H 1.08996 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47290 * 299.99889 * 5 3 2 31 31 H 1.08999 * 109.47247 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47670 * 59.99839 * 5 3 2 33 33 H 1.08998 * 109.47367 * 54.99883 * 6 3 2 34 34 H 1.09001 * 109.46902 * 174.99953 * 6 3 2 35 35 H 1.08998 * 109.47119 * 300.00239 * 7 6 3 36 36 H 1.09001 * 109.46704 * 60.00020 * 7 6 3 37 37 H 0.96998 * 120.00322 * 354.43490 * 10 8 7 38 38 H 1.07995 * 119.99105 * 359.97438 * 12 11 10 39 39 H 1.08000 * 119.91028 * 180.29696 * 13 12 11 40 40 H 1.08003 * 120.00728 * 180.02562 * 16 14 13 41 41 H 0.96994 * 119.99782 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8417 5 6 1.7428 2.4015 -1.3073 6 6 3.7370 1.9411 0.1257 7 6 4.1989 1.4190 1.4877 8 6 5.6910 1.5906 1.6118 9 8 6.3228 2.0817 0.7003 10 7 6.3233 1.1975 2.7351 11 6 7.7216 1.2485 2.8062 12 6 8.4791 1.1938 1.6455 13 6 9.8580 1.2505 1.7166 14 6 10.4885 1.3495 2.9464 15 9 11.8371 1.3985 3.0102 16 6 9.7402 1.3989 4.1089 17 6 8.3552 1.3486 4.0447 18 8 7.6187 1.3975 5.1842 19 6 8.2872 1.6023 6.3367 20 1 9.3668 1.6381 6.3358 21 6 7.5892 1.7672 7.5231 22 7 6.2742 1.7231 7.5243 23 14 8.5156 2.0503 9.1203 24 1 9.9761 2.0563 8.8511 25 1 8.1143 3.3572 9.7002 26 1 8.1931 0.9632 10.0791 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2355 1.9149 -2.1492 31 1 1.9884 3.4635 -1.3075 32 1 0.6636 2.2778 -1.3970 33 1 4.2340 1.3803 -0.6659 34 1 3.9903 2.9975 0.0366 35 1 3.7020 1.9798 2.2793 36 1 3.9456 0.3626 1.5768 37 1 5.8104 0.8793 3.4944 38 1 7.9909 1.1114 0.6857 39 1 10.4459 1.2126 0.8114 40 1 10.2341 1.4764 5.0663 41 1 5.7859 1.8381 8.3544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773456581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:30 Heat of formation + Delta-G solvation = -95.942099 kcal Electronic energy + Delta-G solvation = -24859.681325 eV Core-core repulsion = 20973.837133 eV Total energy + Delta-G solvation = -3885.844192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.24148 -40.17108 -38.67225 -36.44868 -35.55981 -34.06579 -32.41500 -31.15860 -29.43484 -29.01648 -28.19800 -25.55638 -24.86421 -22.54611 -21.82396 -21.28626 -19.86785 -18.36003 -17.86649 -16.95222 -16.66411 -16.64155 -15.59685 -15.27543 -15.22947 -14.94032 -14.60842 -14.44404 -14.28301 -14.19321 -13.82893 -13.71323 -13.52699 -13.34519 -13.05555 -12.77903 -12.64855 -12.29757 -12.20949 -11.87869 -11.68776 -11.51564 -11.40150 -11.27820 -11.09468 -10.99845 -10.71850 -10.51725 -9.96064 -9.80697 -9.77478 -9.27970 -8.97263 -7.88214 -7.86304 -7.06736 -6.61316 -4.18818 1.47374 1.79456 2.11402 2.36299 2.97777 3.05272 3.07747 3.12976 3.47243 3.84326 4.35260 4.49949 4.54465 4.82571 4.86047 4.88782 4.93215 4.96534 5.05570 5.12020 5.19299 5.30096 5.38078 5.48046 5.52475 5.61483 5.68795 5.74669 5.83309 5.95855 6.01804 6.12840 6.23930 6.55675 6.72870 6.90944 6.94890 7.05142 7.18738 7.64418 7.82155 7.92884 8.52609 8.84903 9.45436 10.55934 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011333 B = 0.003130 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.113765 B = 8942.155395 C =10994.332806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.258 6.258 3 C -0.057 4.057 4 H 0.089 0.911 5 C -0.147 4.147 6 C -0.082 4.082 7 C -0.143 4.143 8 C 0.510 3.490 9 O -0.538 6.538 10 N -0.648 5.648 11 C 0.064 3.936 12 C -0.062 4.062 13 C -0.226 4.226 14 C 0.126 3.874 15 F -0.152 7.152 16 C -0.257 4.257 17 C 0.155 3.845 18 O -0.171 6.171 19 C -0.392 4.392 20 H 0.095 0.905 21 C 0.043 3.957 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.418 0.582 38 H 0.148 0.852 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 -1.187 -11.904 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.032 6.032 3 C -0.186 4.186 4 H 0.107 0.893 5 C -0.206 4.206 6 C -0.121 4.121 7 C -0.183 4.183 8 C 0.298 3.702 9 O -0.417 6.417 10 N -0.291 5.291 11 C -0.030 4.030 12 C -0.082 4.082 13 C -0.246 4.246 14 C 0.106 3.894 15 F -0.131 7.131 16 C -0.278 4.278 17 C 0.099 3.901 18 O -0.074 6.074 19 C -0.467 4.467 20 H 0.112 0.888 21 C -0.162 4.162 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.254 0.746 38 H 0.165 0.835 39 H 0.140 0.860 40 H 0.160 0.840 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.077 -1.734 -12.307 15.390 hybrid contribution -0.374 1.034 1.422 1.797 sum -9.450 -0.700 -10.885 14.432 Atomic orbital electron populations 1.23397 0.94833 1.06318 1.04757 1.87010 1.06744 1.11632 1.97846 1.23256 1.00324 0.93517 1.01469 0.89270 1.22067 1.00960 1.01221 0.96351 1.21180 0.90807 1.03130 0.96978 1.21742 0.92138 1.04751 0.99632 1.20675 0.90090 0.77366 0.82100 1.90620 1.67871 1.43613 1.39572 1.43251 1.05285 1.63221 1.17390 1.16959 0.82422 1.12209 0.91460 1.20782 0.92183 0.97638 0.97609 1.20502 0.94684 1.13698 0.95723 1.17466 0.75970 1.01652 0.94321 1.91411 1.30224 1.94026 1.97400 1.20846 0.93427 1.15184 0.98355 1.18725 0.89548 0.94869 0.86933 1.83892 1.34258 1.77396 1.11838 1.21391 0.92094 1.51164 0.82082 0.88772 1.25279 0.95882 0.96206 0.98838 1.70015 1.05826 1.45240 1.28291 0.85616 0.79284 0.78412 0.80010 1.18960 1.20040 1.20008 0.90548 0.90648 0.88277 0.91206 0.91452 0.92651 0.90091 0.89562 0.88532 0.87740 0.74600 0.83497 0.85952 0.83963 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.45 101.05 1.06 0.19 16 2 S -0.26 -2.57 20.60 -107.50 -2.21 -4.78 16 3 C -0.06 -0.51 2.82 -26.73 -0.08 -0.59 16 4 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.15 -1.11 9.10 37.16 0.34 -0.77 16 6 C -0.08 -0.90 3.97 -26.73 -0.11 -1.00 16 7 C -0.14 -1.74 5.53 -27.88 -0.15 -1.89 16 8 C 0.51 8.37 7.64 -10.99 -0.08 8.28 16 9 O -0.54 -10.08 13.15 5.55 0.07 -10.01 16 10 N -0.65 -11.85 5.29 -9.72 -0.05 -11.90 16 11 C 0.06 1.33 6.45 -83.44 -0.54 0.80 16 12 C -0.06 -1.20 8.72 -39.42 -0.34 -1.54 16 13 C -0.23 -4.25 10.02 -39.48 -0.40 -4.65 16 14 C 0.13 2.54 7.29 -39.43 -0.29 2.26 16 15 F -0.15 -2.94 17.26 2.25 0.04 -2.90 16 16 C -0.26 -5.66 9.14 -39.36 -0.36 -6.02 16 17 C 0.16 3.58 6.66 -38.94 -0.26 3.32 16 18 O -0.17 -4.44 9.17 0.05 0.00 -4.44 16 19 C -0.39 -10.30 9.49 30.88 0.29 -10.01 16 20 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -23.33 13.67 55.48 0.76 -22.57 16 23 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.45 7.14 -51.92 -0.37 0.08 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.36 6.92 -51.93 -0.36 0.00 16 33 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 1.22 7.13 -51.93 -0.37 0.85 16 37 H 0.42 7.39 8.34 -40.82 -0.34 7.05 16 38 H 0.15 2.76 5.79 -52.49 -0.30 2.46 16 39 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 40 H 0.14 3.13 5.63 -52.48 -0.30 2.83 16 41 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 360.37 15.07 5.43 5.43 Total: -1.00 -29.47 360.37 -7.25 -36.72 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -5.25 Total: 10.42 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.01 Total: -10.62 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.71 Total: -34.47 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.07 Total: -14.45 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.21 Total: -4.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.47 -7.25 -36.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773456581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.218 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds