Wall clock time and date at job start Tue Mar 31 2020 15:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81394 * 102.99994 * 2 1 4 4 H 1.08991 * 109.47424 * 55.00008 * 3 2 1 5 5 C 1.52995 * 109.47200 * 294.99878 * 3 2 1 6 6 C 1.53006 * 109.46930 * 175.00137 * 3 2 1 7 7 C 1.53004 * 109.47026 * 294.99796 * 6 3 2 8 8 C 1.50697 * 109.47091 * 180.02562 * 7 6 3 9 9 O 1.21294 * 119.99883 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99878 * 180.02562 * 8 7 6 11 11 C 1.40095 * 120.00013 * 174.43935 * 10 8 7 12 12 C 1.38713 * 120.07427 * 335.19442 * 11 10 8 13 13 C 1.38193 * 120.01745 * 179.69847 * 12 11 10 14 14 C 1.38554 * 120.17372 * 0.60027 * 13 12 11 15 15 F 1.35106 * 119.91729 * 179.70279 * 14 13 12 16 16 C 1.38339 * 120.15464 * 359.67075 * 14 13 12 17 17 C 1.38741 * 119.98180 * 0.03369 * 16 14 13 18 18 O 1.35769 * 120.09168 * 180.02562 * 17 16 14 19 19 C 1.34808 * 117.00029 * 5.16314 * 18 17 16 20 20 H 1.08011 * 119.99621 * 354.97907 * 19 18 17 21 21 C 1.38634 * 120.00245 * 174.97936 * 19 18 17 22 22 N 1.31572 * 119.99936 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00198 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47016 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46942 * 120.00022 * 23 21 19 26 26 H 1.48498 * 109.47329 * 240.00613 * 23 21 19 27 27 H 1.08994 * 109.46905 * 299.99865 * 1 2 3 28 28 H 1.09001 * 109.46904 * 60.00462 * 1 2 3 29 29 H 1.08996 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47290 * 299.99889 * 5 3 2 31 31 H 1.08999 * 109.47247 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47670 * 59.99839 * 5 3 2 33 33 H 1.08998 * 109.47367 * 54.99883 * 6 3 2 34 34 H 1.09001 * 109.46902 * 174.99953 * 6 3 2 35 35 H 1.08998 * 109.47119 * 300.00239 * 7 6 3 36 36 H 1.09001 * 109.46704 * 60.00020 * 7 6 3 37 37 H 0.96998 * 120.00322 * 354.43490 * 10 8 7 38 38 H 1.07995 * 119.99105 * 359.97438 * 12 11 10 39 39 H 1.08000 * 119.91028 * 180.29696 * 13 12 11 40 40 H 1.08003 * 120.00728 * 180.02562 * 16 14 13 41 41 H 0.96994 * 119.99782 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8417 5 6 1.7428 2.4015 -1.3073 6 6 3.7370 1.9411 0.1257 7 6 4.1989 1.4190 1.4877 8 6 5.6910 1.5906 1.6118 9 8 6.3228 2.0817 0.7003 10 7 6.3233 1.1975 2.7351 11 6 7.7216 1.2485 2.8062 12 6 8.4791 1.1938 1.6455 13 6 9.8580 1.2505 1.7166 14 6 10.4885 1.3495 2.9464 15 9 11.8371 1.3985 3.0102 16 6 9.7402 1.3989 4.1089 17 6 8.3552 1.3486 4.0447 18 8 7.6187 1.3975 5.1842 19 6 8.2872 1.6023 6.3367 20 1 9.3668 1.6381 6.3358 21 6 7.5892 1.7672 7.5231 22 7 6.2742 1.7231 7.5243 23 14 8.5156 2.0503 9.1203 24 1 9.9761 2.0563 8.8511 25 1 8.1143 3.3572 9.7002 26 1 8.1931 0.9632 10.0791 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2355 1.9149 -2.1492 31 1 1.9884 3.4635 -1.3075 32 1 0.6636 2.2778 -1.3970 33 1 4.2340 1.3803 -0.6659 34 1 3.9903 2.9975 0.0366 35 1 3.7020 1.9798 2.2793 36 1 3.9456 0.3626 1.5768 37 1 5.8104 0.8793 3.4944 38 1 7.9909 1.1114 0.6857 39 1 10.4459 1.2126 0.8114 40 1 10.2341 1.4764 5.0663 41 1 5.7859 1.8381 8.3544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773456581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:29 Heat of formation + Delta-G solvation = -111.887441 kcal Electronic energy + Delta-G solvation = -24860.372767 eV Core-core repulsion = 20973.837133 eV Total energy + Delta-G solvation = -3886.535634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.83710 -41.69517 -40.28506 -38.08720 -36.49631 -35.56782 -34.31296 -32.12656 -31.06473 -30.00394 -29.34326 -27.42415 -25.88875 -24.09204 -23.22254 -22.37601 -21.25307 -20.16693 -19.53429 -18.25284 -18.20958 -17.62849 -17.01997 -16.85007 -16.55938 -16.49487 -15.96984 -15.67616 -15.56046 -15.45456 -15.22847 -15.05881 -14.85165 -14.37691 -14.09002 -14.01652 -13.74868 -13.57860 -13.45020 -13.39181 -13.07511 -12.67003 -12.55715 -12.38458 -12.31858 -12.12624 -12.03869 -11.95136 -11.66570 -11.30474 -10.85756 -10.72709 -10.66256 -9.57444 -8.72940 -8.62026 -8.51780 -6.17420 0.15765 0.43920 0.79447 1.37279 1.42861 1.53228 1.58363 1.72183 2.08250 2.15871 2.66954 3.01482 3.17984 3.43987 3.54188 3.72684 3.90785 4.02618 4.13315 4.17222 4.32755 4.36179 4.37035 4.40178 4.47867 4.60560 4.71674 4.81216 4.83260 4.92694 4.96886 4.99903 5.05090 5.19615 5.21117 5.28668 5.29738 5.33989 5.53062 5.92744 6.02300 6.47886 6.93015 7.11173 7.60853 8.69090 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011333 B = 0.003130 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.113765 B = 8942.155395 C =10994.332806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.311 6.311 3 C -0.045 4.045 4 H 0.098 0.902 5 C -0.144 4.144 6 C -0.077 4.077 7 C -0.132 4.132 8 C 0.510 3.490 9 O -0.559 6.559 10 N -0.653 5.653 11 C 0.065 3.935 12 C -0.064 4.064 13 C -0.202 4.202 14 C 0.119 3.881 15 F -0.145 7.145 16 C -0.263 4.263 17 C 0.128 3.872 18 O -0.203 6.203 19 C -0.416 4.416 20 H 0.098 0.902 21 C -0.008 4.008 22 N -0.904 5.904 23 Si 1.011 2.989 24 H -0.258 1.258 25 H -0.269 1.269 26 H -0.267 1.267 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.418 0.582 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 -0.907 -12.929 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.086 6.086 3 C -0.173 4.173 4 H 0.117 0.883 5 C -0.203 4.203 6 C -0.116 4.116 7 C -0.172 4.172 8 C 0.300 3.700 9 O -0.439 6.439 10 N -0.297 5.297 11 C -0.031 4.031 12 C -0.084 4.084 13 C -0.221 4.221 14 C 0.099 3.901 15 F -0.124 7.124 16 C -0.284 4.284 17 C 0.075 3.925 18 O -0.108 6.108 19 C -0.491 4.491 20 H 0.116 0.884 21 C -0.208 4.208 22 N -0.540 5.540 23 Si 0.832 3.168 24 H -0.181 1.181 25 H -0.194 1.194 26 H -0.192 1.192 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.255 0.745 38 H 0.176 0.824 39 H 0.175 0.825 40 H 0.153 0.847 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.394 -1.459 -13.378 16.412 hybrid contribution -0.239 0.919 1.481 1.759 sum -9.633 -0.540 -11.897 15.318 Atomic orbital electron populations 1.23432 0.91671 1.07156 1.05764 1.87189 1.10340 1.13105 1.97993 1.23176 0.98724 0.92701 1.02716 0.88327 1.22047 1.01718 1.01361 0.95170 1.21121 0.92294 1.02582 0.95561 1.21764 0.88780 1.05606 1.01008 1.21423 0.91632 0.76030 0.80883 1.90594 1.68788 1.44430 1.40078 1.43425 1.04466 1.63596 1.18186 1.17254 0.83924 1.10762 0.91123 1.20993 0.92527 0.97464 0.97461 1.20898 0.94622 1.10222 0.96397 1.17462 0.76268 1.02189 0.94217 1.91427 1.29569 1.93998 1.97373 1.20928 0.93385 1.15092 0.98975 1.19076 0.90186 0.96129 0.87152 1.83872 1.34988 1.79595 1.12390 1.21770 0.92585 1.51967 0.82827 0.88426 1.26365 0.96796 0.95657 1.01961 1.70118 1.07382 1.47174 1.29371 0.84618 0.78210 0.78531 0.75490 1.18139 1.19404 1.19159 0.89785 0.89353 0.87559 0.91807 0.90724 0.91303 0.91320 0.89783 0.87088 0.86954 0.74496 0.82402 0.82498 0.84652 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.45 113.37 1.19 -0.14 16 2 S -0.31 -5.82 20.60 -56.49 -1.16 -6.98 16 3 C -0.04 -0.73 2.82 30.59 0.09 -0.64 16 4 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 5 C -0.14 -1.90 9.10 71.98 0.66 -1.24 16 6 C -0.08 -1.59 3.97 30.60 0.12 -1.47 16 7 C -0.13 -3.10 5.53 29.85 0.17 -2.93 16 8 C 0.51 16.53 7.64 87.66 0.67 17.20 16 9 O -0.56 -20.51 13.15 -3.07 -0.04 -20.55 16 10 N -0.65 -24.07 5.29 -303.04 -1.60 -25.67 16 11 C 0.06 2.70 6.45 38.23 0.25 2.94 16 12 C -0.06 -2.41 8.72 22.37 0.19 -2.21 16 13 C -0.20 -7.12 10.02 22.33 0.22 -6.90 16 14 C 0.12 4.65 7.29 22.37 0.16 4.81 16 15 F -0.14 -5.36 17.26 44.97 0.78 -4.59 16 16 C -0.26 -11.68 9.14 22.41 0.20 -11.47 16 17 C 0.13 6.05 6.66 22.69 0.15 6.20 16 18 O -0.20 -10.98 9.17 -22.73 -0.21 -11.19 16 19 C -0.42 -22.59 9.49 67.91 0.64 -21.95 16 20 H 0.10 5.02 5.20 -2.90 -0.02 5.00 16 21 C -0.01 -0.42 5.49 84.83 0.47 0.04 16 22 N -0.90 -50.48 13.67 21.61 0.30 -50.19 16 23 Si 1.01 40.68 29.55 68.60 2.03 42.71 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 25 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.09 0.83 7.14 -2.39 -0.02 0.81 16 29 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.73 6.92 -2.39 -0.02 0.71 16 33 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 34 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 35 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.11 2.53 7.13 -2.39 -0.02 2.51 16 37 H 0.42 15.24 8.34 -92.71 -0.77 14.46 16 38 H 0.16 5.66 5.79 -2.91 -0.02 5.64 16 39 H 0.16 4.48 8.06 -2.91 -0.02 4.45 16 40 H 0.14 6.10 5.63 -2.91 -0.02 6.09 16 41 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -64.43 360.37 5.56 -58.87 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.30 Total: 35.36 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.18 Total: -17.77 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -1.31 Total: -75.86 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.25 Total: -31.74 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.78 Total: -4.59 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -1.16 Total: -6.98 kcal Total: -64.43 5.56 -58.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773456581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.019 kcal (2) G-P(sol) polarization free energy of solvation -64.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds