Wall clock time and date at job start Tue Mar 31 2020 15:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35920 * 116.99913 * 2 1 4 4 C 1.38590 * 120.02206 * 359.72519 * 3 2 1 5 5 C 1.38803 * 119.88494 * 179.74203 * 4 3 2 6 6 N 1.39738 * 120.03827 * 180.24967 * 5 4 3 7 7 N 1.40090 * 119.99900 * 180.28232 * 6 5 4 8 8 C 1.34774 * 120.00022 * 180.02562 * 7 6 5 9 9 O 1.21592 * 120.00446 * 179.97438 * 8 7 6 10 10 N 1.34779 * 120.00059 * 359.97438 * 8 7 6 11 11 C 1.46495 * 120.00529 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47305 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47102 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47078 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00031 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00063 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99765 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00372 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46940 * 59.99421 * 18 16 14 20 20 H 1.48492 * 109.47309 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46581 * 300.00029 * 18 16 14 22 22 C 1.38941 * 119.92590 * 0.53037 * 5 4 3 23 23 C 1.38142 * 120.04572 * 359.72120 * 22 5 4 24 24 C 1.38292 * 120.11108 * 0.02562 * 23 22 5 25 25 Cl 1.73601 * 119.96157 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.47382 * 300.00034 * 1 2 3 27 27 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 60.00141 * 1 2 3 29 29 H 1.07999 * 120.05939 * 359.97438 * 4 3 2 30 30 H 0.96998 * 119.99631 * 0.28140 * 6 5 4 31 31 H 0.97007 * 120.00278 * 359.97438 * 7 6 5 32 32 H 0.96999 * 119.99823 * 359.97438 * 10 8 7 33 33 H 1.09006 * 109.46922 * 300.00163 * 11 10 8 34 34 H 1.09000 * 109.46973 * 59.99084 * 11 10 8 35 35 H 1.08995 * 109.47334 * 299.99560 * 12 11 10 36 36 H 1.08996 * 109.47056 * 59.99851 * 12 11 10 37 37 H 1.09003 * 109.46921 * 299.99792 * 13 12 11 38 38 H 1.09004 * 109.47297 * 59.99725 * 13 12 11 39 39 H 0.96998 * 119.99972 * 179.97438 * 17 16 14 40 40 H 1.08006 * 119.98270 * 179.69892 * 22 5 4 41 41 H 1.08004 * 119.94567 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2917 2.3737 -0.0058 5 6 1.9248 3.6089 -0.0003 6 7 1.1672 4.7831 -0.0008 7 7 1.8070 6.0294 -0.0013 8 6 1.0765 7.1620 -0.0013 9 8 1.6317 8.2437 -0.0012 10 7 -0.2697 7.0955 -0.0013 11 6 -1.0639 8.3265 -0.0018 12 6 -2.5525 7.9731 -0.0024 13 6 -3.3819 9.2588 -0.0023 14 6 -4.8481 8.9106 -0.0035 15 1 -5.1574 7.8759 -0.0038 16 6 -5.7947 9.9131 -0.0041 17 7 -5.4180 11.1732 -0.0032 18 14 -7.6123 9.4817 -0.0049 19 1 -7.9327 8.6864 1.2076 20 1 -8.4172 10.7295 -0.0049 21 1 -7.9315 8.6860 -1.2174 22 6 3.3125 3.6766 -0.0003 23 6 4.0616 2.5159 0.0002 24 6 3.4327 1.2842 0.0001 25 17 4.3778 -0.1719 0.0000 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 0.2131 2.3186 -0.0107 30 1 0.1984 4.7352 -0.0009 31 1 2.7759 6.0773 -0.0009 32 1 -0.7127 6.2326 -0.0017 33 1 -0.8291 8.9108 0.8880 34 1 -0.8290 8.9101 -0.8920 35 1 -2.7870 7.3891 -0.8923 36 1 -2.7876 7.3894 0.8876 37 1 -3.1474 9.8424 0.8880 38 1 -3.1468 9.8429 -0.8920 39 1 -6.0839 11.8785 -0.0041 40 1 3.8061 4.6373 -0.0010 41 1 5.1403 2.5703 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788962725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:36 Heat of formation + Delta-G solvation = -14.276384 kcal Electronic energy + Delta-G solvation = -24027.390189 eV Core-core repulsion = 20162.963544 eV Total energy + Delta-G solvation = -3864.426645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.83684 -40.11725 -38.37017 -36.88233 -35.90863 -35.61786 -33.38210 -32.31111 -31.14900 -30.52450 -28.72205 -27.44873 -26.76929 -23.62541 -22.89991 -22.60338 -20.97407 -20.68276 -19.28623 -18.88945 -17.32806 -16.85955 -16.69321 -16.37265 -16.24350 -15.84282 -15.44442 -15.17614 -14.51947 -14.46517 -14.46010 -14.29624 -13.96406 -13.83873 -12.88148 -12.84952 -12.35210 -12.24119 -11.91696 -11.90275 -11.87788 -11.77445 -11.09785 -11.05190 -10.93953 -10.85026 -10.70730 -10.50512 -9.96814 -9.60398 -9.54728 -9.21354 -9.04124 -8.81357 -8.42736 -7.63934 -6.07362 -4.11010 0.84790 0.95641 1.57835 2.01191 2.78096 2.96809 2.99154 3.25346 3.27485 3.32892 3.34229 4.25184 4.38458 4.43433 4.56120 4.58905 4.76604 4.81416 5.00188 5.12087 5.14790 5.28316 5.44488 5.58384 5.64792 5.66920 5.77687 5.97285 6.04598 6.14057 6.28257 6.48681 6.62541 6.78366 6.87413 6.91190 7.06904 7.56057 7.68143 7.90397 7.92329 8.30266 8.37124 8.95149 9.53348 11.03753 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.001982 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.092279 B =14125.024359 C =15705.065196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.303 6.303 3 C 0.191 3.809 4 C -0.272 4.272 5 C 0.265 3.735 6 N -0.540 5.540 7 N -0.538 5.538 8 C 0.709 3.291 9 O -0.573 6.573 10 N -0.737 5.737 11 C 0.132 3.868 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.525 4.525 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.222 4.222 23 C -0.018 4.018 24 C -0.125 4.125 25 Cl -0.066 7.066 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.140 0.860 30 H 0.425 0.575 31 H 0.431 0.569 32 H 0.389 0.611 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.129 0.871 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.371 -23.101 0.005 28.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.143 3.857 4 C -0.297 4.297 5 C 0.159 3.841 6 N -0.268 5.268 7 N -0.294 5.294 8 C 0.409 3.591 9 O -0.446 6.446 10 N -0.393 5.393 11 C 0.009 3.991 12 C -0.159 4.159 13 C -0.013 4.013 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.531 5.531 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.245 4.245 23 C -0.038 4.038 24 C -0.155 4.155 25 Cl -0.038 7.038 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.158 0.842 30 H 0.268 0.732 31 H 0.277 0.723 32 H 0.223 0.777 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.147 0.853 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 17.745 -22.124 0.006 28.361 hybrid contribution -1.488 -0.559 0.001 1.589 sum 16.257 -22.683 0.007 27.908 Atomic orbital electron populations 1.23169 0.77701 1.04441 1.01829 1.86184 1.21850 1.25712 1.87728 1.18246 0.90144 0.84383 0.92900 1.20329 1.00339 0.89651 1.19401 1.17393 0.90810 0.84007 0.91847 1.43389 1.06247 0.94424 1.82699 1.44636 1.08269 0.94273 1.82268 1.15786 0.82368 0.82537 0.78457 1.91042 1.70536 1.24306 1.58766 1.45438 1.03989 1.10958 1.78875 1.21637 0.91058 0.84068 1.02364 1.21908 0.91015 1.02125 1.00852 1.19024 0.93702 0.90814 0.97787 1.21136 0.91151 0.92667 1.51344 0.92726 1.25035 0.99167 0.95037 0.95212 1.69951 1.34009 0.98926 1.50236 0.86631 0.84938 0.77692 0.78570 1.20250 1.21234 1.20244 1.20304 0.91300 0.98802 1.14111 1.20601 1.00250 0.89065 0.93871 1.19863 0.88506 0.88637 1.18474 1.98347 1.71724 1.36192 1.97523 0.92177 0.87873 0.92170 0.84217 0.73207 0.72291 0.77729 0.91476 0.91486 0.92705 0.92710 0.96169 0.96169 0.92805 0.85304 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.30 -2.58 9.95 -19.49 -0.19 -2.77 16 3 C 0.19 1.68 6.68 -39.22 -0.26 1.42 16 4 C -0.27 -2.05 8.88 -39.24 -0.35 -2.40 16 5 C 0.27 2.11 6.72 -83.78 -0.56 1.55 16 6 N -0.54 -4.31 6.45 32.41 0.21 -4.10 16 7 N -0.54 -5.39 6.22 27.64 0.17 -5.21 16 8 C 0.71 9.84 8.68 -86.92 -0.75 9.08 16 9 O -0.57 -10.33 17.18 5.28 0.09 -10.24 16 10 N -0.74 -9.62 5.52 -65.23 -0.36 -9.98 16 11 C 0.13 2.16 5.67 -4.05 -0.02 2.14 16 12 C -0.12 -2.21 5.27 -26.73 -0.14 -2.35 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 18 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.22 -1.68 9.48 -39.36 -0.37 -2.06 16 23 C -0.02 -0.14 9.82 -39.60 -0.39 -0.53 16 24 C -0.13 -1.13 6.33 -39.33 -0.25 -1.38 16 25 Cl -0.07 -0.61 28.49 -51.86 -1.48 -2.09 16 26 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 27 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 29 H 0.14 0.76 6.30 -52.49 -0.33 0.43 16 30 H 0.43 2.80 6.71 -182.61 -1.23 1.58 16 31 H 0.43 3.76 6.70 -182.60 -1.22 2.53 16 32 H 0.39 3.91 6.39 -40.82 -0.26 3.65 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.13 0.80 6.20 -52.48 -0.33 0.47 16 41 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -33.16 363.55 -10.11 -43.27 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.08 Total: 1.14 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.66 Total: -5.98 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.76 Total: -44.80 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.10 Total: -13.01 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.16 -10.11 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788962725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.998 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds