Wall clock time and date at job start Tue Mar 31 2020 15:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35920 * 116.99913 * 2 1 4 4 C 1.38590 * 120.02206 * 359.72519 * 3 2 1 5 5 C 1.38803 * 119.88494 * 179.74203 * 4 3 2 6 6 N 1.39738 * 120.03827 * 180.24967 * 5 4 3 7 7 N 1.40090 * 119.99900 * 180.28232 * 6 5 4 8 8 C 1.34774 * 120.00022 * 180.02562 * 7 6 5 9 9 O 1.21592 * 120.00446 * 179.97438 * 8 7 6 10 10 N 1.34779 * 120.00059 * 359.97438 * 8 7 6 11 11 C 1.46495 * 120.00529 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47305 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47102 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47078 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00031 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00063 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99765 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00372 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46940 * 59.99421 * 18 16 14 20 20 H 1.48492 * 109.47309 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46581 * 300.00029 * 18 16 14 22 22 C 1.38941 * 119.92590 * 0.53037 * 5 4 3 23 23 C 1.38142 * 120.04572 * 359.72120 * 22 5 4 24 24 C 1.38292 * 120.11108 * 0.02562 * 23 22 5 25 25 Cl 1.73601 * 119.96157 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.47382 * 300.00034 * 1 2 3 27 27 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 60.00141 * 1 2 3 29 29 H 1.07999 * 120.05939 * 359.97438 * 4 3 2 30 30 H 0.96998 * 119.99631 * 0.28140 * 6 5 4 31 31 H 0.97007 * 120.00278 * 359.97438 * 7 6 5 32 32 H 0.96999 * 119.99823 * 359.97438 * 10 8 7 33 33 H 1.09006 * 109.46922 * 300.00163 * 11 10 8 34 34 H 1.09000 * 109.46973 * 59.99084 * 11 10 8 35 35 H 1.08995 * 109.47334 * 299.99560 * 12 11 10 36 36 H 1.08996 * 109.47056 * 59.99851 * 12 11 10 37 37 H 1.09003 * 109.46921 * 299.99792 * 13 12 11 38 38 H 1.09004 * 109.47297 * 59.99725 * 13 12 11 39 39 H 0.96998 * 119.99972 * 179.97438 * 17 16 14 40 40 H 1.08006 * 119.98270 * 179.69892 * 22 5 4 41 41 H 1.08004 * 119.94567 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2917 2.3737 -0.0058 5 6 1.9248 3.6089 -0.0003 6 7 1.1672 4.7831 -0.0008 7 7 1.8070 6.0294 -0.0013 8 6 1.0765 7.1620 -0.0013 9 8 1.6317 8.2437 -0.0012 10 7 -0.2697 7.0955 -0.0013 11 6 -1.0639 8.3265 -0.0018 12 6 -2.5525 7.9731 -0.0024 13 6 -3.3819 9.2588 -0.0023 14 6 -4.8481 8.9106 -0.0035 15 1 -5.1574 7.8759 -0.0038 16 6 -5.7947 9.9131 -0.0041 17 7 -5.4180 11.1732 -0.0032 18 14 -7.6123 9.4817 -0.0049 19 1 -7.9327 8.6864 1.2076 20 1 -8.4172 10.7295 -0.0049 21 1 -7.9315 8.6860 -1.2174 22 6 3.3125 3.6766 -0.0003 23 6 4.0616 2.5159 0.0002 24 6 3.4327 1.2842 0.0001 25 17 4.3778 -0.1719 0.0000 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 0.2131 2.3186 -0.0107 30 1 0.1984 4.7352 -0.0009 31 1 2.7759 6.0773 -0.0009 32 1 -0.7127 6.2326 -0.0017 33 1 -0.8291 8.9108 0.8880 34 1 -0.8290 8.9101 -0.8920 35 1 -2.7870 7.3891 -0.8923 36 1 -2.7876 7.3894 0.8876 37 1 -3.1474 9.8424 0.8880 38 1 -3.1468 9.8429 -0.8920 39 1 -6.0839 11.8785 -0.0041 40 1 3.8061 4.6373 -0.0010 41 1 5.1403 2.5703 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788962725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:35 Heat of formation + Delta-G solvation = -36.368477 kcal Electronic energy + Delta-G solvation = -24028.348174 eV Core-core repulsion = 20162.963544 eV Total energy + Delta-G solvation = -3865.384631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59588 -40.98835 -39.04196 -37.57949 -37.06098 -36.66641 -35.17790 -33.29140 -32.61576 -31.14782 -29.37480 -28.49461 -27.92947 -25.19016 -23.67663 -23.29963 -22.34112 -21.92458 -19.97105 -19.89510 -18.51703 -18.01369 -17.50039 -17.27162 -17.02888 -16.72761 -16.61017 -16.27929 -16.00777 -15.77564 -15.40671 -14.99135 -14.64525 -14.58214 -14.25522 -13.75680 -13.73417 -13.41111 -13.37276 -12.79322 -12.71989 -12.55822 -12.41167 -12.34774 -12.31433 -11.86030 -11.80051 -11.69637 -11.67034 -11.40355 -11.19422 -10.53511 -10.44626 -10.09786 -9.44787 -8.32962 -8.18333 -6.29579 0.25638 0.34300 0.79452 1.36601 1.42785 1.45267 1.53105 1.90922 1.93523 2.31013 2.42957 2.63905 3.15591 3.60702 3.78271 4.02785 4.06681 4.11864 4.22847 4.38855 4.43174 4.45185 4.54982 4.60588 4.80346 4.87991 4.95592 4.98645 5.04376 5.14766 5.19094 5.29735 5.34460 5.50717 5.53132 5.72304 5.85553 5.95080 6.22772 6.23347 6.39874 6.87868 7.03430 7.33077 7.39926 8.93332 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.001982 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.092279 B =14125.024359 C =15705.065196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.179 3.821 4 C -0.267 4.267 5 C 0.258 3.742 6 N -0.534 5.534 7 N -0.523 5.523 8 C 0.710 3.290 9 O -0.619 6.619 10 N -0.725 5.725 11 C 0.146 3.854 12 C -0.101 4.101 13 C 0.023 3.977 14 C -0.540 4.540 15 H 0.068 0.932 16 C -0.004 4.004 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.226 4.226 23 C -0.020 4.020 24 C -0.142 4.142 25 Cl -0.075 7.075 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.161 0.839 30 H 0.433 0.567 31 H 0.439 0.561 32 H 0.407 0.593 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.070 0.930 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.263 0.737 40 H 0.142 0.858 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.612 -25.221 0.002 30.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.131 3.869 4 C -0.291 4.291 5 C 0.153 3.847 6 N -0.264 5.264 7 N -0.278 5.278 8 C 0.409 3.591 9 O -0.496 6.496 10 N -0.382 5.382 11 C 0.022 3.978 12 C -0.139 4.139 13 C -0.015 4.015 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.190 1.190 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.249 4.249 23 C -0.039 4.039 24 C -0.171 4.171 25 Cl -0.046 7.046 26 H 0.087 0.913 27 H 0.135 0.865 28 H 0.088 0.912 29 H 0.178 0.822 30 H 0.277 0.723 31 H 0.287 0.713 32 H 0.244 0.756 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.071 0.929 40 H 0.159 0.841 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 16.998 -24.337 0.003 29.685 hybrid contribution -1.198 0.020 0.002 1.199 sum 15.800 -24.317 0.005 28.999 Atomic orbital electron populations 1.23421 0.76040 1.05761 1.02701 1.86167 1.23677 1.25778 1.87730 1.18415 0.90291 0.84943 0.93227 1.20492 1.01385 0.88934 1.18326 1.17492 0.91032 0.83956 0.92201 1.43334 1.06533 0.93360 1.83218 1.44295 1.08412 0.94387 1.80663 1.15766 0.82327 0.82736 0.78305 1.91017 1.71412 1.26452 1.60710 1.45030 1.03752 1.10667 1.78782 1.21194 0.90418 0.85114 1.01106 1.21600 0.90970 0.99083 1.02279 1.18945 0.94171 0.93192 0.95207 1.21649 0.92424 0.93304 1.50431 0.91414 1.26021 1.04372 0.94897 0.94901 1.70104 1.35586 1.00118 1.51644 0.85488 0.78772 0.77452 0.79249 1.19033 1.21407 1.19018 1.20517 0.91413 0.99371 1.13618 1.20801 1.01190 0.88591 0.93296 1.20138 0.88933 0.88807 1.19231 1.98339 1.71913 1.36778 1.97591 0.91254 0.86510 0.91242 0.82162 0.72289 0.71346 0.75648 0.92894 0.92903 0.91170 0.91177 0.98855 0.98859 0.92879 0.84079 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -5.03 9.95 -92.65 -0.92 -5.95 16 3 C 0.18 2.88 6.68 22.50 0.15 3.03 16 4 C -0.27 -3.39 8.88 22.49 0.20 -3.19 16 5 C 0.26 3.50 6.72 38.18 0.26 3.76 16 6 N -0.53 -7.13 6.45 -51.38 -0.33 -7.46 16 7 N -0.52 -9.44 6.22 -184.74 -1.15 -10.58 16 8 C 0.71 18.79 8.68 179.05 1.55 20.34 16 9 O -0.62 -22.22 17.18 -4.00 -0.07 -22.29 16 10 N -0.73 -17.70 5.52 -478.54 -2.64 -20.34 16 11 C 0.15 4.73 5.67 86.38 0.49 5.22 16 12 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 13 C 0.02 1.12 4.97 29.85 0.15 1.27 16 14 C -0.54 -29.02 9.11 25.60 0.23 -28.79 16 15 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 17 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 18 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 C -0.23 -2.98 9.48 22.42 0.21 -2.77 16 23 C -0.02 -0.27 9.82 22.26 0.22 -0.05 16 24 C -0.14 -2.39 6.33 22.43 0.14 -2.25 16 25 Cl -0.07 -1.32 28.49 -2.72 -0.08 -1.40 16 26 H 0.07 0.41 7.67 -2.39 -0.02 0.39 16 27 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.41 7.65 -2.38 -0.02 0.39 16 29 H 0.16 1.25 6.30 -2.91 -0.02 1.24 16 30 H 0.43 4.35 6.71 -213.33 -1.43 2.92 16 31 H 0.44 6.82 6.70 -213.32 -1.43 5.39 16 32 H 0.41 7.02 6.39 -92.71 -0.59 6.43 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.86 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.14 1.44 6.20 -2.91 -0.02 1.43 16 41 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -72.30 363.55 0.10 -72.19 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -2.36 Total: 12.24 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 5.34 Total: -5.39 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -3.84 Total: -94.06 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.99 Total: -28.23 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -72.30 0.10 -72.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788962725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.824 kcal (2) G-P(sol) polarization free energy of solvation -72.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds