Wall clock time and date at job start Tue Mar 31 2020 15:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34117 * 125.15849 * 2 1 4 4 C 1.38035 * 107.87912 * 180.10711 * 3 2 1 5 5 C 1.47229 * 126.81227 * 179.89570 * 4 3 2 6 6 O 1.21653 * 119.99876 * 179.68371 * 5 4 3 7 7 N 1.34773 * 120.00212 * 359.95595 * 5 4 3 8 8 C 1.40568 * 120.00178 * 179.72522 * 7 5 4 9 9 C 1.40654 * 126.08420 * 0.02817 * 8 7 5 10 10 N 1.30901 * 108.39322 * 180.02562 * 9 8 7 11 11 N 1.40074 * 108.40564 * 359.97438 * 10 9 8 12 12 C 1.37319 * 126.06664 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00097 * 179.97438 * 12 11 10 14 14 C 1.38983 * 120.00481 * 359.97438 * 12 11 10 15 15 N 1.31300 * 119.99513 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00341 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47059 * 89.99723 * 16 14 12 18 18 H 1.48499 * 109.47081 * 209.99602 * 16 14 12 19 19 H 1.48500 * 109.47049 * 330.00140 * 16 14 12 20 20 C 1.35684 * 126.07989 * 179.72078 * 8 7 5 21 21 C 1.46594 * 106.36954 * 359.62845 * 4 3 2 22 22 C 1.48327 * 126.51311 * 180.24414 * 21 4 3 23 23 C 1.46736 * 127.11712 * 144.99919 * 22 21 4 24 24 C 1.34359 * 106.02213 * 180.02562 * 23 22 21 25 25 O 1.34159 * 109.00137 * 0.02562 * 24 23 22 26 26 C 1.34079 * 110.75842 * 359.72710 * 25 24 23 27 27 N 1.31362 * 106.97375 * 0.22842 * 21 4 3 28 28 H 1.09000 * 109.47104 * 270.29568 * 1 2 3 29 29 H 1.09002 * 109.47165 * 30.28813 * 1 2 3 30 30 H 1.08999 * 109.47377 * 150.29464 * 1 2 3 31 31 H 1.07996 * 126.06412 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00112 * 359.73066 * 7 5 4 33 33 H 1.08000 * 125.80408 * 0.02993 * 9 8 7 34 34 H 0.97004 * 119.99843 * 180.02562 * 15 14 12 35 35 H 1.08001 * 126.25154 * 359.97010 * 20 8 7 36 36 H 1.07997 * 126.98199 * 0.02562 * 23 22 21 37 37 H 1.07998 * 125.49674 * 180.02562 * 24 23 22 38 38 H 1.07999 * 125.77601 * 180.28452 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.0965 0.0000 4 6 3.5554 0.6865 -0.0025 5 6 4.7479 1.5500 -0.0055 6 8 5.8584 1.0534 -0.0016 7 7 4.6092 2.8905 -0.0070 8 6 5.7477 3.7150 -0.0041 9 6 7.0853 3.2801 -0.0001 10 7 7.8621 4.3337 0.0023 11 7 7.0548 5.4784 -0.0007 12 6 7.4960 6.7788 0.0000 13 1 6.7838 7.5907 -0.0029 14 6 8.8591 7.0503 0.0045 15 7 9.7249 6.0633 0.0086 16 14 9.4591 8.8193 0.0047 17 1 9.6132 9.2896 1.4048 18 1 10.7689 8.8978 -0.6907 19 1 8.4724 9.6768 -0.6997 20 6 5.7518 5.0718 -0.0105 21 6 3.5321 -0.7792 0.0051 22 6 4.7101 -1.6806 0.0107 23 6 4.8303 -2.9764 0.6887 24 6 6.0670 -3.4247 0.4151 25 8 6.6964 -2.5263 -0.3573 26 6 5.8993 -1.4793 -0.6143 27 7 2.2698 -1.1428 0.0063 28 1 -0.3633 0.0053 1.0276 29 1 -0.3633 0.8874 -0.5183 30 1 -0.3634 -0.8926 -0.5092 31 1 1.8897 2.1190 -0.0004 32 1 3.7237 3.2865 -0.0100 33 1 7.4154 2.2518 0.0008 34 1 10.6763 6.2528 0.0121 35 1 4.8828 5.7130 -0.0192 36 1 4.0777 -3.4693 1.2861 37 1 6.4866 -4.3577 0.7612 38 1 6.1595 -0.6201 -1.2148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789920174.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:46 Heat of formation + Delta-G solvation = 151.952515 kcal Electronic energy + Delta-G solvation = -26290.136193 eV Core-core repulsion = 22331.810280 eV Total energy + Delta-G solvation = -3958.325913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.16594 -41.05828 -39.70315 -38.19068 -34.36323 -33.91047 -33.15532 -32.04595 -30.64844 -30.06475 -29.54482 -27.75882 -26.71649 -24.87130 -23.21056 -22.12690 -21.30494 -20.77255 -20.27093 -19.32150 -19.22928 -17.84460 -17.45463 -16.81121 -15.83892 -15.77220 -15.60136 -15.40263 -15.13400 -14.88259 -14.30749 -14.15080 -13.76829 -13.37391 -13.21254 -13.17299 -12.86516 -12.82867 -12.64391 -12.48355 -12.06541 -11.66509 -11.38154 -11.24543 -10.95893 -10.91744 -10.51977 -10.20945 -10.11155 -9.23146 -9.19194 -9.13167 -8.76859 -8.69867 -8.13436 -8.01267 -6.64405 -6.52825 -4.19311 1.47593 1.63108 2.17303 2.21036 2.94511 3.03163 3.06384 3.11526 3.28609 3.48965 3.67138 3.89451 3.92696 4.22280 4.37462 4.52832 4.68639 4.82230 4.84816 4.94072 5.05080 5.07956 5.22282 5.31945 5.46307 5.51354 5.64851 6.00906 6.26932 6.31859 6.38035 6.50612 6.57283 6.68219 6.94626 7.00784 7.18189 7.28741 7.30293 7.52832 7.89390 8.25289 8.33235 8.68584 8.94699 9.41426 9.71287 10.43160 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.002927 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.668049 B = 9562.441757 C =11181.431118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.369 5.369 3 C 0.095 3.905 4 C -0.270 4.270 5 C 0.580 3.420 6 O -0.537 6.537 7 N -0.621 5.621 8 C -0.056 4.056 9 C -0.031 4.031 10 N -0.260 5.260 11 N -0.144 5.144 12 C -0.324 4.324 13 H 0.115 0.885 14 C 0.046 3.954 15 N -0.770 5.770 16 Si 0.934 3.066 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.085 4.085 21 C 0.208 3.792 22 C -0.145 4.145 23 C -0.188 4.188 24 C -0.052 4.052 25 O -0.180 6.180 26 C 0.058 3.942 27 N -0.291 5.291 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.184 0.816 32 H 0.392 0.608 33 H 0.178 0.822 34 H 0.274 0.726 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.201 0.799 38 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.519 -10.906 -0.325 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.149 5.149 3 C -0.054 4.054 4 C -0.285 4.285 5 C 0.367 3.633 6 O -0.416 6.416 7 N -0.262 5.262 8 C -0.162 4.162 9 C -0.207 4.207 10 N -0.091 5.091 11 N 0.089 4.911 12 C -0.456 4.456 13 H 0.133 0.867 14 C -0.171 4.171 15 N -0.396 5.396 16 Si 0.758 3.242 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.236 4.236 21 C 0.040 3.960 22 C -0.148 4.148 23 C -0.208 4.208 24 C -0.118 4.118 25 O -0.075 6.075 26 C -0.012 4.012 27 N -0.111 5.111 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.201 0.799 32 H 0.225 0.775 33 H 0.194 0.806 34 H 0.085 0.915 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.217 0.783 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.994 -11.882 -0.411 19.136 hybrid contribution -1.154 1.570 0.272 1.967 sum -16.148 -10.313 -0.139 19.160 Atomic orbital electron populations 1.21945 0.73831 1.04810 1.03665 1.48057 1.06966 1.03413 1.56418 1.22946 0.90595 0.93456 0.98382 1.21368 0.92534 0.92923 1.21680 1.16918 0.87421 0.81051 0.77867 1.90596 1.25813 1.73748 1.51482 1.42323 1.07548 1.04676 1.71630 1.17238 0.86754 0.88664 1.23509 1.24136 0.89397 0.99336 1.07806 1.78256 1.16087 0.89155 1.25648 1.44537 1.01781 1.05534 1.39291 1.19843 0.92769 0.79439 1.53523 0.86716 1.25627 0.95790 1.00112 0.95559 1.70221 1.02556 1.31447 1.35399 0.85844 0.78807 0.80648 0.78935 1.19636 1.20106 1.18864 1.21235 0.89087 0.93109 1.20186 1.20786 0.89995 0.89843 0.95407 1.18816 0.92971 0.95806 1.07233 1.22699 0.98006 0.95428 1.04701 1.23768 0.93063 0.95872 0.99091 1.83949 1.41784 1.26573 1.55223 1.24711 0.87756 0.89453 0.99327 1.77356 1.01364 1.06329 1.26065 0.90477 0.89123 0.89063 0.79892 0.77509 0.80562 0.91498 0.83845 0.83422 0.78261 0.76326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.39 59.85 0.68 1.22 16 2 N -0.37 -3.97 3.95 -67.64 -0.27 -4.24 16 3 C 0.09 1.02 10.94 -16.63 -0.18 0.84 16 4 C -0.27 -4.04 6.31 -102.95 -0.65 -4.69 16 5 C 0.58 10.42 7.78 -12.61 -0.10 10.32 16 6 O -0.54 -11.17 10.18 5.23 0.05 -11.11 16 7 N -0.62 -10.87 5.46 -11.02 -0.06 -10.93 16 8 C -0.06 -1.27 6.90 -83.85 -0.58 -1.85 16 9 C -0.03 -0.81 10.85 -17.04 -0.18 -1.00 16 10 N -0.26 -7.55 10.40 30.80 0.32 -7.23 16 11 N -0.14 -3.92 3.74 -11.41 -0.04 -3.97 16 12 C -0.32 -8.53 10.25 -14.82 -0.15 -8.69 16 13 H 0.12 2.70 7.83 -52.48 -0.41 2.28 16 14 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 15 N -0.77 -21.53 11.81 55.49 0.66 -20.88 16 16 Si 0.93 18.91 29.55 -169.99 -5.02 13.88 16 17 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 18 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 20 C -0.09 -1.98 11.49 -16.38 -0.19 -2.17 16 21 C 0.21 3.27 7.34 -80.55 -0.59 2.68 16 22 C -0.14 -2.28 6.07 -103.17 -0.63 -2.91 16 23 C -0.19 -2.52 11.15 -37.52 -0.42 -2.94 16 24 C -0.05 -0.62 12.04 29.36 0.35 -0.27 16 25 O -0.18 -2.64 10.55 6.70 0.07 -2.57 16 26 C 0.06 0.92 10.28 29.88 0.31 1.23 16 27 N -0.29 -4.16 12.50 34.58 0.43 -3.73 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.25 8.13 -51.93 -0.42 -0.17 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.18 1.17 7.48 -52.49 -0.39 0.78 16 32 H 0.39 5.15 7.78 -40.82 -0.32 4.83 16 33 H 0.18 4.53 5.91 -52.49 -0.31 4.22 16 34 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.14 2.75 8.06 -52.49 -0.42 2.33 16 36 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.22 3.54 6.35 -52.49 -0.33 3.20 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -36.56 340.00 -4.60 -41.16 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -3.44 Total: 11.61 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.42 Total: -7.12 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 1.04 Total: -50.96 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.12 Total: -13.69 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.56 -4.60 -41.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789920174.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.108 kcal (2) G-P(sol) polarization free energy of solvation -36.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds