Wall clock time and date at job start Tue Mar 31 2020 15:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34117 * 125.15849 * 2 1 4 4 C 1.38035 * 107.87912 * 180.10711 * 3 2 1 5 5 C 1.47229 * 126.81227 * 179.89570 * 4 3 2 6 6 O 1.21653 * 119.99876 * 179.68371 * 5 4 3 7 7 N 1.34773 * 120.00212 * 359.95595 * 5 4 3 8 8 C 1.40568 * 120.00178 * 179.72522 * 7 5 4 9 9 C 1.40654 * 126.08420 * 0.02817 * 8 7 5 10 10 N 1.30901 * 108.39322 * 180.02562 * 9 8 7 11 11 N 1.40074 * 108.40564 * 359.97438 * 10 9 8 12 12 C 1.37319 * 126.06664 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00097 * 179.97438 * 12 11 10 14 14 C 1.38983 * 120.00481 * 359.97438 * 12 11 10 15 15 N 1.31300 * 119.99513 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00341 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47059 * 89.99723 * 16 14 12 18 18 H 1.48499 * 109.47081 * 209.99602 * 16 14 12 19 19 H 1.48500 * 109.47049 * 330.00140 * 16 14 12 20 20 C 1.35684 * 126.07989 * 179.72078 * 8 7 5 21 21 C 1.46594 * 106.36954 * 359.62845 * 4 3 2 22 22 C 1.48327 * 126.51311 * 180.24414 * 21 4 3 23 23 C 1.46736 * 127.11712 * 144.99919 * 22 21 4 24 24 C 1.34359 * 106.02213 * 180.02562 * 23 22 21 25 25 O 1.34159 * 109.00137 * 0.02562 * 24 23 22 26 26 C 1.34079 * 110.75842 * 359.72710 * 25 24 23 27 27 N 1.31362 * 106.97375 * 0.22842 * 21 4 3 28 28 H 1.09000 * 109.47104 * 270.29568 * 1 2 3 29 29 H 1.09002 * 109.47165 * 30.28813 * 1 2 3 30 30 H 1.08999 * 109.47377 * 150.29464 * 1 2 3 31 31 H 1.07996 * 126.06412 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00112 * 359.73066 * 7 5 4 33 33 H 1.08000 * 125.80408 * 0.02993 * 9 8 7 34 34 H 0.97004 * 119.99843 * 180.02562 * 15 14 12 35 35 H 1.08001 * 126.25154 * 359.97010 * 20 8 7 36 36 H 1.07997 * 126.98199 * 0.02562 * 23 22 21 37 37 H 1.07998 * 125.49674 * 180.02562 * 24 23 22 38 38 H 1.07999 * 125.77601 * 180.28452 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.0965 0.0000 4 6 3.5554 0.6865 -0.0025 5 6 4.7479 1.5500 -0.0055 6 8 5.8584 1.0534 -0.0016 7 7 4.6092 2.8905 -0.0070 8 6 5.7477 3.7150 -0.0041 9 6 7.0853 3.2801 -0.0001 10 7 7.8621 4.3337 0.0023 11 7 7.0548 5.4784 -0.0007 12 6 7.4960 6.7788 0.0000 13 1 6.7838 7.5907 -0.0029 14 6 8.8591 7.0503 0.0045 15 7 9.7249 6.0633 0.0086 16 14 9.4591 8.8193 0.0047 17 1 9.6132 9.2896 1.4048 18 1 10.7689 8.8978 -0.6907 19 1 8.4724 9.6768 -0.6997 20 6 5.7518 5.0718 -0.0105 21 6 3.5321 -0.7792 0.0051 22 6 4.7101 -1.6806 0.0107 23 6 4.8303 -2.9764 0.6887 24 6 6.0670 -3.4247 0.4151 25 8 6.6964 -2.5263 -0.3573 26 6 5.8993 -1.4793 -0.6143 27 7 2.2698 -1.1428 0.0063 28 1 -0.3633 0.0053 1.0276 29 1 -0.3633 0.8874 -0.5183 30 1 -0.3634 -0.8926 -0.5092 31 1 1.8897 2.1190 -0.0004 32 1 3.7237 3.2865 -0.0100 33 1 7.4154 2.2518 0.0008 34 1 10.6763 6.2528 0.0121 35 1 4.8828 5.7130 -0.0192 36 1 4.0777 -3.4693 1.2861 37 1 6.4866 -4.3577 0.7612 38 1 6.1595 -0.6201 -1.2148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789920174.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:45 Heat of formation + Delta-G solvation = 125.462325 kcal Electronic energy + Delta-G solvation = -26291.284894 eV Core-core repulsion = 22331.810280 eV Total energy + Delta-G solvation = -3959.474614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.25255 -42.09435 -41.47765 -39.72699 -35.89417 -35.07197 -34.85727 -33.01420 -32.26069 -31.54789 -30.56935 -29.42092 -27.66566 -26.67336 -24.46656 -23.12281 -22.80473 -22.25803 -21.59030 -20.90674 -20.40291 -19.19331 -18.95423 -17.98728 -17.36795 -16.87536 -16.77667 -16.72895 -16.55051 -16.02535 -15.74680 -15.61533 -15.01243 -14.88498 -14.72421 -14.56256 -13.90934 -13.70806 -13.62820 -13.45212 -13.35304 -13.20858 -13.02689 -12.87130 -12.79776 -12.07117 -11.95801 -11.76231 -11.22118 -10.95218 -10.77441 -10.63576 -10.22548 -10.03818 -9.73811 -9.22397 -8.42414 -8.42111 -6.18473 0.44801 0.53342 1.14323 1.33815 1.41763 1.43664 1.59639 1.74872 1.91434 2.10334 2.22401 2.30982 2.38673 2.80956 2.99459 3.14258 3.35004 3.52274 3.95354 4.10362 4.17394 4.30180 4.42506 4.48712 4.53087 4.58223 4.63193 4.70449 4.75895 4.96828 5.05744 5.18333 5.23533 5.31787 5.35883 5.52796 5.57354 5.91226 6.01641 6.22211 6.39580 6.50519 6.79998 6.88895 7.49967 7.55164 7.76033 8.57120 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.002927 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.668049 B = 9562.441757 C =11181.431118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.358 5.358 3 C 0.130 3.870 4 C -0.309 4.309 5 C 0.580 3.420 6 O -0.573 6.573 7 N -0.611 5.611 8 C -0.038 4.038 9 C -0.058 4.058 10 N -0.312 5.312 11 N -0.171 5.171 12 C -0.354 4.354 13 H 0.141 0.859 14 C -0.008 4.008 15 N -0.826 5.826 16 Si 1.018 2.982 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.243 1.243 20 C -0.079 4.079 21 C 0.185 3.815 22 C -0.158 4.158 23 C -0.207 4.207 24 C -0.037 4.037 25 O -0.193 6.193 26 C 0.031 3.969 27 N -0.310 5.310 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.236 0.764 32 H 0.417 0.583 33 H 0.168 0.832 34 H 0.275 0.725 35 H 0.190 0.810 36 H 0.165 0.835 37 H 0.246 0.754 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 -9.763 0.065 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.136 5.136 3 C -0.021 4.021 4 C -0.324 4.324 5 C 0.370 3.630 6 O -0.454 6.454 7 N -0.255 5.255 8 C -0.144 4.144 9 C -0.234 4.234 10 N -0.144 5.144 11 N 0.060 4.940 12 C -0.485 4.485 13 H 0.158 0.842 14 C -0.219 4.219 15 N -0.455 5.455 16 Si 0.837 3.163 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.166 1.166 20 C -0.229 4.229 21 C 0.018 3.982 22 C -0.162 4.162 23 C -0.226 4.226 24 C -0.102 4.102 25 O -0.089 6.089 26 C -0.039 4.039 27 N -0.131 5.131 28 H 0.113 0.887 29 H 0.146 0.854 30 H 0.113 0.887 31 H 0.252 0.748 32 H 0.254 0.746 33 H 0.185 0.815 34 H 0.084 0.916 35 H 0.207 0.793 36 H 0.182 0.818 37 H 0.262 0.738 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -18.825 -10.770 -0.024 21.688 hybrid contribution -0.261 1.014 0.168 1.061 sum -19.086 -9.756 0.144 21.435 Atomic orbital electron populations 1.22472 0.70436 1.06910 1.05515 1.48548 1.08692 1.02505 1.53894 1.23588 0.88804 0.95350 0.94333 1.21092 0.93087 0.92244 1.26004 1.17431 0.88050 0.81186 0.76380 1.90593 1.27723 1.74406 1.52632 1.42149 1.07203 1.04181 1.71989 1.17281 0.87124 0.89160 1.20859 1.24191 0.91368 0.98640 1.09173 1.78151 1.18259 0.90536 1.27410 1.44823 1.02929 1.05489 1.40790 1.20589 0.93982 0.79872 1.54030 0.84157 1.26861 0.95665 1.05087 0.94279 1.70413 1.02884 1.34450 1.37705 0.84608 0.78143 0.74391 0.79148 1.19017 1.20406 1.16630 1.21994 0.89162 0.93770 1.18023 1.20932 0.90483 0.90396 0.96385 1.19204 0.93121 0.96873 1.06975 1.22970 0.99183 0.94928 1.05523 1.24670 0.92540 0.96138 0.96888 1.83929 1.42197 1.26850 1.55932 1.24458 0.88538 0.90034 1.00865 1.77292 1.01055 1.08263 1.26463 0.88701 0.85356 0.88744 0.74795 0.74589 0.81506 0.91565 0.79328 0.81755 0.73796 0.77932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.39 127.77 1.46 2.00 16 2 N -0.36 -6.46 3.95 -367.90 -1.45 -7.91 16 3 C 0.13 2.32 10.94 84.30 0.92 3.24 16 4 C -0.31 -8.94 6.31 -18.78 -0.12 -9.05 16 5 C 0.58 20.95 7.78 86.61 0.67 21.62 16 6 O -0.57 -25.18 10.18 -4.20 -0.04 -25.22 16 7 N -0.61 -20.57 5.46 -307.02 -1.68 -22.24 16 8 C -0.04 -1.73 6.90 37.74 0.26 -1.47 16 9 C -0.06 -3.19 10.85 85.42 0.93 -2.26 16 10 N -0.31 -18.92 10.40 -56.47 -0.59 -19.51 16 11 N -0.17 -9.47 3.74 -190.00 -0.71 -10.18 16 12 C -0.35 -18.70 10.25 84.01 0.86 -17.84 16 13 H 0.14 6.37 7.83 -2.91 -0.02 6.35 16 14 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 15 N -0.83 -48.24 11.81 21.66 0.26 -47.99 16 16 Si 1.02 38.76 29.55 68.60 2.03 40.79 16 17 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 18 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.24 -8.33 7.11 99.48 0.71 -7.62 16 20 C -0.08 -3.59 11.49 83.37 0.96 -2.63 16 21 C 0.19 5.83 7.34 44.08 0.32 6.16 16 22 C -0.16 -5.19 6.07 -18.92 -0.11 -5.30 16 23 C -0.21 -5.51 11.15 23.61 0.26 -5.24 16 24 C -0.04 -0.87 12.04 66.93 0.81 -0.06 16 25 O -0.19 -5.94 10.55 1.05 0.01 -5.93 16 26 C 0.03 1.07 10.28 67.27 0.69 1.76 16 27 N -0.31 -8.42 12.50 -44.51 -0.56 -8.98 16 28 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.13 -0.07 8.13 -2.39 -0.02 -0.08 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.24 1.52 7.48 -2.91 -0.02 1.49 16 32 H 0.42 9.49 7.78 -92.71 -0.72 8.77 16 33 H 0.17 9.26 5.91 -2.91 -0.02 9.25 16 34 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.19 6.54 8.06 -2.91 -0.02 6.52 16 36 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.25 3.12 8.06 -2.91 -0.02 3.09 16 38 H 0.20 7.39 6.35 -2.91 -0.02 7.37 16 Total: -1.00 -87.43 340.00 6.07 -81.36 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.42 Total: 34.82 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 8.38 Total: -9.00 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -4.73 Total: -116.82 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.03 Total: -31.15 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -87.43 6.07 -81.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789920174.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.825 kcal (2) G-P(sol) polarization free energy of solvation -87.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds