Wall clock time and date at job start Tue Mar 31 2020 15:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28784 * 125.44634 * 2 1 4 4 N 1.29004 * 108.72566 * 179.72272 * 3 2 1 5 5 C 1.33316 * 107.35110 * 0.42453 * 4 3 2 6 6 C 1.50695 * 126.54745 * 179.83698 * 5 4 3 7 7 O 1.45194 * 109.47423 * 269.68756 * 6 5 4 8 8 C 1.34868 * 117.00523 * 180.02562 * 7 6 5 9 9 O 1.21590 * 119.99375 * 5.10506 * 8 7 6 10 10 C 1.46709 * 120.00358 * 185.10863 * 8 7 6 11 11 C 1.36218 * 125.44965 * 174.61601 * 10 8 7 12 12 C 1.41657 * 107.74129 * 180.25622 * 11 10 8 13 13 C 1.40048 * 133.33490 * 179.80754 * 12 11 10 14 14 C 1.36575 * 119.82632 * 179.97438 * 13 12 11 15 15 C 1.38855 * 120.60267 * 359.95203 * 14 13 12 16 16 C 1.37843 * 120.64036 * 0.02562 * 15 14 13 17 17 C 1.39090 * 119.81638 * 0.02562 * 16 15 14 18 18 N 1.37821 * 133.15438 * 180.02562 * 17 16 15 19 19 C 1.36875 * 125.61850 * 359.97438 * 18 17 16 20 20 H 1.07996 * 119.99862 * 147.60501 * 19 18 17 21 21 C 1.39024 * 120.00067 * 327.60513 * 19 18 17 22 22 N 1.31340 * 119.99893 * 334.68843 * 21 19 18 23 23 Si 1.86796 * 119.99685 * 154.41517 * 21 19 18 24 24 H 1.48501 * 109.46983 * 270.27417 * 23 21 19 25 25 H 1.48495 * 109.47438 * 30.27411 * 23 21 19 26 26 H 1.48497 * 109.47063 * 150.27930 * 23 21 19 27 27 N 1.28877 * 125.45236 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47792 * 270.00910 * 1 2 3 29 29 H 1.09003 * 109.47269 * 30.01452 * 1 2 3 30 30 H 1.09005 * 109.46929 * 150.00543 * 1 2 3 31 31 H 1.09008 * 109.47116 * 149.69017 * 6 5 4 32 32 H 1.09004 * 109.47381 * 29.68968 * 6 5 4 33 33 H 1.08003 * 126.12538 * 359.97438 * 11 10 8 34 34 H 1.07992 * 120.08464 * 359.95466 * 13 12 11 35 35 H 1.08002 * 119.69507 * 179.97438 * 14 13 12 36 36 H 1.08003 * 119.68548 * 180.02562 * 15 14 13 37 37 H 1.07996 * 120.09643 * 180.02562 * 16 15 14 38 38 H 0.97002 * 120.00065 * 353.45119 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2118 1.0492 0.0000 4 7 3.4473 0.6780 0.0059 5 6 3.4620 -0.6551 0.0003 6 6 4.6825 -1.5390 0.0005 7 8 5.0745 -1.8232 -1.3684 8 6 6.1571 -2.6080 -1.5450 9 8 6.7012 -3.1182 -0.5847 10 6 6.6782 -2.8459 -2.8956 11 6 7.8181 -3.5297 -3.1935 12 6 7.9669 -3.5277 -4.6022 13 6 8.9304 -4.0608 -5.4676 14 6 8.7996 -3.8920 -6.8165 15 6 7.7179 -3.1965 -7.3403 16 6 6.7565 -2.6631 -6.5089 17 6 6.8685 -2.8209 -5.1315 18 7 6.0895 -2.4144 -4.0697 19 6 4.9268 -1.6982 -4.1622 20 1 4.1389 -1.8521 -3.4399 21 6 4.7602 -0.7725 -5.1860 22 7 5.8101 -0.2146 -5.7442 23 14 3.0434 -0.3281 -5.7729 24 1 2.6408 -1.2478 -6.8671 25 1 2.0866 -0.4528 -4.6442 26 1 3.0381 1.0697 -6.2742 27 7 2.2125 -1.0498 0.0005 28 1 -0.3635 0.0002 1.0276 29 1 -0.3634 0.8899 -0.5141 30 1 -0.3633 -0.8901 -0.5138 31 1 4.4546 -2.4729 0.5144 32 1 5.4988 -1.0313 0.5143 33 1 8.4904 -3.9870 -2.4827 34 1 9.7748 -4.6035 -5.0692 35 1 9.5441 -4.3036 -7.4819 36 1 7.6289 -3.0723 -8.4094 37 1 5.9186 -2.1241 -6.9257 38 1 6.6951 -0.3748 -5.3809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799484742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:08 Heat of formation + Delta-G solvation = 112.826743 kcal Electronic energy + Delta-G solvation = -27187.627564 eV Core-core repulsion = 23227.605030 eV Total energy + Delta-G solvation = -3960.022534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -44.38627 -40.73892 -39.46595 -36.28366 -36.06602 -35.16269 -33.95739 -33.37096 -30.61020 -29.88706 -29.17159 -28.34217 -27.24066 -24.74672 -23.82290 -23.15442 -22.22453 -21.14118 -20.56474 -19.57385 -18.42778 -17.74528 -17.58558 -17.11964 -16.24471 -15.92284 -15.71090 -15.10001 -14.61381 -14.28569 -14.13595 -13.90215 -13.82214 -13.53220 -13.23564 -13.17535 -12.81492 -12.75886 -12.36731 -12.18934 -11.96430 -11.72369 -11.24688 -11.05890 -10.99069 -10.93708 -10.65861 -10.55088 -10.43704 -10.40732 -10.37656 -10.05389 -9.94543 -9.17074 -8.85700 -7.60954 -7.14517 -6.87159 -4.52096 1.12831 1.50759 1.76843 1.94524 2.59262 2.75820 3.03864 3.06544 3.22037 3.23590 3.77045 3.86953 3.94889 4.14460 4.30832 4.58901 4.64385 4.66342 4.87833 4.90299 5.14940 5.42650 5.47450 5.62352 5.69509 5.72641 5.84113 6.00011 6.02392 6.25755 6.37467 6.48110 6.66922 6.78037 6.87881 6.96518 7.25224 7.39671 7.47894 7.62739 7.73357 7.78081 8.09586 8.28670 8.31434 8.68461 8.98611 9.97893 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.004436 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.773259 B = 6310.456630 C = 7927.806990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.141 5.141 3 N -0.061 5.061 4 N -0.260 5.260 5 C 0.174 3.826 6 C 0.164 3.836 7 O -0.330 6.330 8 C 0.550 3.450 9 O -0.523 6.523 10 C -0.032 4.032 11 C -0.161 4.161 12 C -0.125 4.125 13 C -0.083 4.083 14 C -0.155 4.155 15 C -0.141 4.141 16 C -0.073 4.073 17 C 0.044 3.956 18 N -0.236 5.236 19 C -0.406 4.406 20 H 0.115 0.885 21 C 0.024 3.976 22 N -0.808 5.808 23 Si 1.079 2.921 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.273 1.273 27 N -0.286 5.286 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.706 -0.702 6.021 10.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.054 5.054 3 N -0.055 5.055 4 N -0.133 5.133 5 C -0.109 4.109 6 C 0.087 3.913 7 O -0.245 6.245 8 C 0.399 3.601 9 O -0.413 6.413 10 C -0.145 4.145 11 C -0.189 4.189 12 C -0.130 4.130 13 C -0.101 4.101 14 C -0.174 4.174 15 C -0.162 4.162 16 C -0.093 4.093 17 C -0.071 4.071 18 N 0.103 4.897 19 C -0.535 4.535 20 H 0.132 0.868 21 C -0.193 4.193 22 N -0.434 5.434 23 Si 0.902 3.098 24 H -0.198 1.198 25 H -0.206 1.206 26 H -0.198 1.198 27 N -0.139 5.139 28 H 0.120 0.880 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.093 0.824 5.236 11.400 hybrid contribution 0.978 -1.182 1.319 2.023 sum -9.116 -0.358 6.555 11.233 Atomic orbital electron populations 1.22446 0.69067 1.07112 1.05858 1.50045 1.10772 1.00933 1.43606 1.78984 0.96405 1.14205 1.15924 1.75867 1.09819 1.10924 1.16667 1.24912 0.92402 0.90425 1.03147 1.20665 0.90091 0.97024 0.83520 1.86894 1.45168 1.64254 1.28140 1.19983 0.76730 0.74902 0.88520 1.90804 1.58982 1.50065 1.41443 1.18925 0.98105 1.14272 0.83246 1.20264 0.97452 1.07281 0.93870 1.17873 0.97529 1.04809 0.92776 1.20094 0.97491 0.99921 0.92638 1.20344 0.99097 1.03305 0.94673 1.20600 0.95573 1.01769 0.98279 1.20405 0.99760 0.99110 0.90001 1.18252 0.95484 1.03920 0.89442 1.40349 1.15192 1.31936 1.02266 1.21015 0.92431 1.21485 1.18543 0.86758 1.26842 1.06766 0.92185 0.93500 1.70570 1.01611 1.32946 1.38276 0.83353 0.71892 0.77675 0.76836 1.19772 1.20644 1.19800 1.74681 1.03219 1.15262 1.20739 0.88045 0.86835 0.87009 0.88283 0.87957 0.84636 0.87441 0.87577 0.87238 0.85742 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.63 59.84 0.70 1.28 16 2 N -0.14 -1.85 4.40 -16.69 -0.07 -1.93 16 3 N -0.06 -0.96 13.25 60.35 0.80 -0.16 16 4 N -0.26 -4.67 12.50 32.44 0.41 -4.26 16 5 C 0.17 2.97 8.01 -156.62 -1.25 1.72 16 6 C 0.16 2.77 6.12 36.00 0.22 2.99 16 7 O -0.33 -7.03 7.88 -40.95 -0.32 -7.35 16 8 C 0.55 12.41 7.90 34.15 0.27 12.67 16 9 O -0.52 -11.61 16.63 -19.33 -0.32 -11.93 16 10 C -0.03 -0.78 6.76 -82.28 -0.56 -1.34 16 11 C -0.16 -3.69 10.55 -39.00 -0.41 -4.10 16 12 C -0.13 -2.89 6.16 -106.89 -0.66 -3.55 16 13 C -0.08 -1.64 10.06 -39.50 -0.40 -2.04 16 14 C -0.16 -2.91 9.97 -39.95 -0.40 -3.30 16 15 C -0.14 -2.84 10.02 -39.50 -0.40 -3.23 16 16 C -0.07 -1.71 8.33 -39.41 -0.33 -2.03 16 17 C 0.04 1.10 5.55 -83.83 -0.47 0.63 16 18 N -0.24 -6.07 2.70 -56.10 -0.15 -6.22 16 19 C -0.41 -10.46 8.84 -15.01 -0.13 -10.60 16 20 H 0.11 2.96 6.65 -52.49 -0.35 2.61 16 21 C 0.02 0.59 4.18 -17.47 -0.07 0.52 16 22 N -0.81 -21.18 11.42 55.50 0.63 -20.55 16 23 Si 1.08 21.87 29.99 -169.99 -5.10 16.78 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 25 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 27 N -0.29 -4.45 12.13 32.46 0.39 -4.06 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.10 1.47 8.10 -51.92 -0.42 1.05 16 32 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.14 2.78 8.06 -52.48 -0.42 2.36 16 34 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.11 1.89 8.06 -52.48 -0.42 1.46 16 37 H 0.12 3.01 6.10 -52.49 -0.32 2.69 16 38 H 0.29 8.12 7.00 -40.82 -0.29 7.83 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -32.04 338.96 -6.06 -38.10 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -3.55 Total: 6.85 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.89 Total: -10.38 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 2.01 Total: -37.17 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.64 Total: -19.28 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.10 Total: 16.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.04 -6.06 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799484742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.930 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds