Wall clock time and date at job start Tue Mar 31 2020 15:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28784 * 125.44634 * 2 1 4 4 N 1.29004 * 108.72566 * 179.72272 * 3 2 1 5 5 C 1.33316 * 107.35110 * 0.42453 * 4 3 2 6 6 C 1.50695 * 126.54745 * 179.83698 * 5 4 3 7 7 O 1.45194 * 109.47423 * 269.68756 * 6 5 4 8 8 C 1.34868 * 117.00523 * 180.02562 * 7 6 5 9 9 O 1.21590 * 119.99375 * 5.10506 * 8 7 6 10 10 C 1.46709 * 120.00358 * 185.10863 * 8 7 6 11 11 C 1.36218 * 125.44965 * 174.61601 * 10 8 7 12 12 C 1.41657 * 107.74129 * 180.25622 * 11 10 8 13 13 C 1.40048 * 133.33490 * 179.80754 * 12 11 10 14 14 C 1.36575 * 119.82632 * 179.97438 * 13 12 11 15 15 C 1.38855 * 120.60267 * 359.95203 * 14 13 12 16 16 C 1.37843 * 120.64036 * 0.02562 * 15 14 13 17 17 C 1.39090 * 119.81638 * 0.02562 * 16 15 14 18 18 N 1.37821 * 133.15438 * 180.02562 * 17 16 15 19 19 C 1.36875 * 125.61850 * 359.97438 * 18 17 16 20 20 H 1.07996 * 119.99862 * 147.60501 * 19 18 17 21 21 C 1.39024 * 120.00067 * 327.60513 * 19 18 17 22 22 N 1.31340 * 119.99893 * 334.68843 * 21 19 18 23 23 Si 1.86796 * 119.99685 * 154.41517 * 21 19 18 24 24 H 1.48501 * 109.46983 * 270.27417 * 23 21 19 25 25 H 1.48495 * 109.47438 * 30.27411 * 23 21 19 26 26 H 1.48497 * 109.47063 * 150.27930 * 23 21 19 27 27 N 1.28877 * 125.45236 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47792 * 270.00910 * 1 2 3 29 29 H 1.09003 * 109.47269 * 30.01452 * 1 2 3 30 30 H 1.09005 * 109.46929 * 150.00543 * 1 2 3 31 31 H 1.09008 * 109.47116 * 149.69017 * 6 5 4 32 32 H 1.09004 * 109.47381 * 29.68968 * 6 5 4 33 33 H 1.08003 * 126.12538 * 359.97438 * 11 10 8 34 34 H 1.07992 * 120.08464 * 359.95466 * 13 12 11 35 35 H 1.08002 * 119.69507 * 179.97438 * 14 13 12 36 36 H 1.08003 * 119.68548 * 180.02562 * 15 14 13 37 37 H 1.07996 * 120.09643 * 180.02562 * 16 15 14 38 38 H 0.97002 * 120.00065 * 353.45119 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2118 1.0492 0.0000 4 7 3.4473 0.6780 0.0059 5 6 3.4620 -0.6551 0.0003 6 6 4.6825 -1.5390 0.0005 7 8 5.0745 -1.8232 -1.3684 8 6 6.1571 -2.6080 -1.5450 9 8 6.7012 -3.1182 -0.5847 10 6 6.6782 -2.8459 -2.8956 11 6 7.8181 -3.5297 -3.1935 12 6 7.9669 -3.5277 -4.6022 13 6 8.9304 -4.0608 -5.4676 14 6 8.7996 -3.8920 -6.8165 15 6 7.7179 -3.1965 -7.3403 16 6 6.7565 -2.6631 -6.5089 17 6 6.8685 -2.8209 -5.1315 18 7 6.0895 -2.4144 -4.0697 19 6 4.9268 -1.6982 -4.1622 20 1 4.1389 -1.8521 -3.4399 21 6 4.7602 -0.7725 -5.1860 22 7 5.8101 -0.2146 -5.7442 23 14 3.0434 -0.3281 -5.7729 24 1 2.6408 -1.2478 -6.8671 25 1 2.0866 -0.4528 -4.6442 26 1 3.0381 1.0697 -6.2742 27 7 2.2125 -1.0498 0.0005 28 1 -0.3635 0.0002 1.0276 29 1 -0.3634 0.8899 -0.5141 30 1 -0.3633 -0.8901 -0.5138 31 1 4.4546 -2.4729 0.5144 32 1 5.4988 -1.0313 0.5143 33 1 8.4904 -3.9870 -2.4827 34 1 9.7748 -4.6035 -5.0692 35 1 9.5441 -4.3036 -7.4819 36 1 7.6289 -3.0723 -8.4094 37 1 5.9186 -2.1241 -6.9257 38 1 6.6951 -0.3748 -5.3809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799484742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:07 Heat of formation + Delta-G solvation = 93.978433 kcal Electronic energy + Delta-G solvation = -27188.444888 eV Core-core repulsion = 23227.605030 eV Total energy + Delta-G solvation = -3960.839858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.56317 -42.48636 -41.14738 -37.89088 -37.73339 -36.27524 -35.76316 -34.60222 -32.37087 -31.18607 -30.66837 -29.89012 -28.46791 -26.58857 -25.42944 -24.23777 -23.51197 -22.86136 -22.22938 -21.32938 -20.16797 -19.10064 -18.74365 -18.48052 -17.80776 -17.55364 -17.41920 -16.68164 -16.09941 -15.91472 -15.68849 -15.32456 -14.97865 -14.86314 -14.61787 -14.46682 -14.37198 -14.05594 -13.94236 -13.73121 -13.39991 -13.09953 -12.90894 -12.52562 -12.30100 -12.27561 -12.22311 -12.17669 -12.07198 -11.97675 -11.90067 -11.60049 -11.35653 -10.95585 -10.62582 -9.45661 -8.93525 -8.62349 -6.44922 -0.21223 -0.02921 0.50952 0.93652 0.99577 1.04473 1.37065 1.45069 1.64690 1.76057 2.11502 2.17593 2.51056 2.63724 2.83120 3.00666 3.18766 3.76896 3.86272 3.97268 4.08588 4.19901 4.22857 4.28914 4.33821 4.38658 4.49762 4.60208 4.63552 4.67161 4.82649 5.00506 5.05183 5.08624 5.17398 5.29884 5.41875 5.68186 5.74533 5.83855 5.99666 6.03759 6.39569 6.57278 6.87164 7.08272 7.15352 8.03570 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.004436 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.773259 B = 6310.456630 C = 7927.806990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.121 5.121 3 N -0.070 5.070 4 N -0.295 5.295 5 C 0.157 3.843 6 C 0.162 3.838 7 O -0.346 6.346 8 C 0.553 3.447 9 O -0.524 6.524 10 C -0.059 4.059 11 C -0.156 4.156 12 C -0.146 4.146 13 C -0.080 4.080 14 C -0.149 4.149 15 C -0.122 4.122 16 C -0.112 4.112 17 C 0.028 3.972 18 N -0.263 5.263 19 C -0.428 4.428 20 H 0.101 0.899 21 C -0.008 4.008 22 N -0.829 5.829 23 Si 1.121 2.879 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.271 1.271 27 N -0.290 5.290 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.158 0.842 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 -1.849 5.367 10.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.036 5.036 3 N -0.064 5.064 4 N -0.167 5.167 5 C -0.125 4.125 6 C 0.085 3.915 7 O -0.261 6.261 8 C 0.401 3.599 9 O -0.415 6.415 10 C -0.172 4.172 11 C -0.183 4.183 12 C -0.151 4.151 13 C -0.098 4.098 14 C -0.168 4.168 15 C -0.142 4.142 16 C -0.132 4.132 17 C -0.087 4.087 18 N 0.075 4.925 19 C -0.556 4.556 20 H 0.119 0.881 21 C -0.218 4.218 22 N -0.455 5.455 23 Si 0.938 3.062 24 H -0.180 1.180 25 H -0.198 1.198 26 H -0.195 1.195 27 N -0.145 5.145 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.264 -0.315 4.596 11.250 hybrid contribution 1.052 -0.947 1.550 2.099 sum -9.212 -1.262 6.146 11.146 Atomic orbital electron populations 1.23190 0.65317 1.09073 1.08691 1.50679 1.12546 0.99773 1.40607 1.78886 0.96093 1.14833 1.16545 1.75813 1.11216 1.11507 1.18116 1.24894 0.92963 0.90341 1.04338 1.20939 0.90753 0.98223 0.81556 1.86850 1.44531 1.63750 1.30943 1.19812 0.76995 0.75023 0.88062 1.90775 1.59198 1.50272 1.41291 1.19461 0.99084 1.14569 0.84044 1.20631 0.97036 1.06147 0.94512 1.18317 0.98110 1.05431 0.93215 1.20562 0.97395 0.99002 0.92885 1.20848 0.99130 1.01887 0.94933 1.21091 0.94395 0.99191 0.99567 1.20458 1.01169 1.01559 0.90013 1.18764 0.95868 1.03950 0.90109 1.40469 1.15881 1.33368 1.02828 1.20968 0.92756 1.22646 1.19228 0.88104 1.28091 1.09083 0.91394 0.93269 1.70681 1.00938 1.34557 1.39366 0.82881 0.68404 0.77775 0.77139 1.17969 1.19809 1.19538 1.74643 1.02890 1.16086 1.20859 0.84692 0.84590 0.85395 0.86323 0.86912 0.82474 0.83844 0.82912 0.84156 0.87643 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 11.63 127.77 1.49 2.22 16 2 N -0.12 -3.04 4.40 -206.73 -0.91 -3.95 16 3 N -0.07 -2.18 13.25 37.02 0.49 -1.69 16 4 N -0.30 -10.79 12.50 -51.26 -0.64 -11.43 16 5 C 0.16 5.46 8.01 138.55 1.11 6.57 16 6 C 0.16 5.58 6.12 71.23 0.44 6.02 16 7 O -0.35 -15.32 7.88 -57.82 -0.46 -15.78 16 8 C 0.55 25.63 7.90 70.03 0.55 26.18 16 9 O -0.52 -23.46 16.63 19.54 0.32 -23.13 16 10 C -0.06 -2.97 6.76 39.87 0.27 -2.70 16 11 C -0.16 -7.12 10.55 22.64 0.24 -6.88 16 12 C -0.15 -6.66 6.16 -21.33 -0.13 -6.79 16 13 C -0.08 -2.92 10.06 22.32 0.22 -2.70 16 14 C -0.15 -4.99 9.97 22.03 0.22 -4.77 16 15 C -0.12 -4.62 10.02 22.32 0.22 -4.39 16 16 C -0.11 -5.27 8.33 22.38 0.19 -5.08 16 17 C 0.03 1.42 5.55 39.07 0.22 1.64 16 18 N -0.26 -14.06 2.70 -331.41 -0.89 -14.95 16 19 C -0.43 -23.16 8.84 84.09 0.74 -22.41 16 20 H 0.10 5.53 6.65 -2.91 -0.02 5.51 16 21 C -0.01 -0.40 4.18 84.95 0.36 -0.05 16 22 N -0.83 -45.36 11.42 21.67 0.25 -45.11 16 23 Si 1.12 45.08 29.99 68.60 2.06 47.14 16 24 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 25 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 26 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 27 N -0.29 -8.92 12.13 -51.20 -0.62 -9.54 16 28 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.12 3.54 8.10 -2.38 -0.02 3.52 16 32 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.16 6.28 8.06 -2.91 -0.02 6.26 16 34 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 35 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 37 H 0.11 5.29 6.10 -2.91 -0.02 5.27 16 38 H 0.27 15.90 7.00 -92.71 -0.65 15.25 16 Total: -1.00 -73.28 338.96 6.98 -66.31 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 1.24 Total: 25.27 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 6.13 Total: -13.14 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -2.33 Total: -86.67 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.13 Total: -38.91 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.06 Total: 47.14 kcal Total: -73.28 6.98 -66.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799484742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.285 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds