Wall clock time and date at job start Tue Mar 31 2020 14:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81406 * 102.99889 * 2 1 4 4 C 1.53001 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46974 * 59.99890 * 4 3 2 6 6 C 1.52995 * 109.47089 * 299.99909 * 4 3 2 7 7 C 1.50697 * 109.46776 * 179.97438 * 4 3 2 8 8 O 1.21293 * 120.00567 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99756 * 179.97438 * 7 4 3 10 10 C 1.40095 * 120.00234 * 185.61096 * 9 7 4 11 11 C 1.38703 * 120.07135 * 34.06838 * 10 9 7 12 12 C 1.38190 * 120.01915 * 179.97438 * 11 10 9 13 13 C 1.38550 * 120.17660 * 0.02873 * 12 11 10 14 14 F 1.35098 * 119.92530 * 179.97438 * 13 12 11 15 15 C 1.38342 * 120.15339 * 359.97438 * 13 12 11 16 16 C 1.38746 * 119.97685 * 359.97438 * 15 13 12 17 17 O 1.35768 * 120.08648 * 180.29603 * 16 15 13 18 18 C 1.34804 * 117.00414 * 354.18978 * 17 16 15 19 19 H 1.08010 * 119.99890 * 354.52046 * 18 17 16 20 20 C 1.38631 * 120.00498 * 174.52045 * 18 17 16 21 21 N 1.31570 * 120.00438 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99884 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47102 * 90.00303 * 22 20 18 24 24 H 1.48502 * 109.46967 * 210.00364 * 22 20 18 25 25 H 1.48500 * 109.46897 * 330.00083 * 22 20 18 26 26 H 1.09007 * 109.46874 * 60.00563 * 1 2 3 27 27 H 1.09004 * 109.47131 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47201 * 300.00362 * 1 2 3 29 29 H 1.09001 * 109.46786 * 59.99874 * 3 2 1 30 30 H 1.09002 * 109.47029 * 299.99533 * 3 2 1 31 31 H 1.08997 * 109.47134 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47511 * 300.00010 * 5 4 3 33 33 H 1.09002 * 109.47291 * 60.00013 * 5 4 3 34 34 H 1.08998 * 109.47678 * 299.99842 * 6 4 3 35 35 H 1.09003 * 109.47502 * 60.00320 * 6 4 3 36 36 H 1.09000 * 109.47356 * 179.97438 * 6 4 3 37 37 H 0.97008 * 120.00325 * 5.61240 * 9 7 4 38 38 H 1.08003 * 119.99404 * 359.97401 * 11 10 9 39 39 H 1.08004 * 119.91352 * 180.02562 * 12 11 10 40 40 H 1.07998 * 120.01586 * 180.02562 * 15 13 12 41 41 H 0.96997 * 120.00470 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.3309 1.2807 -1.2483 6 6 4.3298 1.2810 1.2502 7 6 4.0812 3.4084 0.0000 8 8 3.1942 4.2356 -0.0004 9 7 5.3701 3.8024 0.0009 10 6 5.6869 5.1620 0.1190 11 6 4.8944 5.9955 0.8944 12 6 5.2082 7.3363 1.0105 13 6 6.3134 7.8523 0.3534 14 9 6.6152 9.1640 0.4700 15 6 7.1087 7.0276 -0.4220 16 6 6.8002 5.6802 -0.5421 17 8 7.5826 4.8675 -1.2976 18 6 8.5727 5.4522 -2.0011 19 1 8.6602 6.5287 -2.0182 20 6 9.4788 4.6720 -2.7026 21 7 10.4455 5.2427 -3.3889 22 14 9.3281 2.8103 -2.6725 23 1 8.4582 2.3659 -3.7910 24 1 10.6748 2.2023 -2.8210 25 1 8.7317 2.3829 -1.3815 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8031 2.2371 0.8900 30 1 1.8032 2.2372 -0.8900 31 1 5.4138 1.4039 -1.2481 32 1 4.0857 0.2187 -1.2483 33 1 3.9123 1.7502 -2.1385 34 1 3.9105 1.7507 2.1400 35 1 4.0847 0.2189 1.2502 36 1 5.4129 1.4034 1.2505 37 1 6.0785 3.1447 -0.0801 38 1 4.0319 5.5965 1.4075 39 1 4.5902 7.9837 1.6150 40 1 7.9699 7.4321 -0.9329 41 1 11.0797 4.6968 -3.8795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799967330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:28 Heat of formation + Delta-G solvation = -89.993840 kcal Electronic energy + Delta-G solvation = -25815.603148 eV Core-core repulsion = 21930.016892 eV Total energy + Delta-G solvation = -3885.586256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.34011 -40.61423 -39.07644 -36.76183 -35.66972 -34.29575 -32.55620 -29.68951 -29.38628 -28.69049 -27.50857 -27.26682 -25.50400 -23.78491 -22.09970 -21.41088 -19.35322 -18.38400 -18.04373 -17.07568 -16.83201 -16.09049 -15.70169 -15.42388 -15.12745 -15.08682 -14.88474 -14.31759 -14.17668 -14.14424 -13.89384 -13.67947 -13.60992 -13.41332 -13.34486 -12.56979 -12.49925 -12.36212 -12.31451 -12.21282 -12.02409 -11.88137 -11.55913 -11.31101 -11.21871 -10.99796 -10.83786 -10.50789 -10.19810 -9.86016 -9.78802 -9.45353 -9.04738 -8.05076 -7.85887 -7.32276 -6.58704 -4.26201 1.39800 1.63098 1.94945 2.33742 2.74092 3.08467 3.11553 3.19141 3.31659 4.05117 4.15370 4.30976 4.48006 4.57990 4.63710 4.87350 4.88096 4.89718 4.91371 4.96162 5.28284 5.41914 5.43067 5.43871 5.51084 5.61944 5.65111 5.69021 5.77688 5.85210 5.98864 6.05077 6.11878 6.30910 6.65000 6.76068 6.77921 6.89710 7.38267 7.55408 7.67480 7.82192 8.30054 8.73902 9.28100 10.48323 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.004260 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.532737 B = 6571.454524 C = 8794.885924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.253 6.253 3 C -0.059 4.059 4 C -0.063 4.063 5 C -0.148 4.148 6 C -0.144 4.144 7 C 0.524 3.476 8 O -0.531 6.531 9 N -0.648 5.648 10 C 0.060 3.940 11 C -0.049 4.049 12 C -0.222 4.222 13 C 0.131 3.869 14 F -0.148 7.148 15 C -0.245 4.245 16 C 0.167 3.833 17 O -0.207 6.207 18 C -0.391 4.391 19 H 0.109 0.891 20 C 0.067 3.933 21 N -0.870 5.870 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.260 1.260 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.411 0.589 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.150 0.850 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 -9.676 7.889 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.027 6.027 3 C -0.208 4.208 4 C -0.067 4.067 5 C -0.206 4.206 6 C -0.202 4.202 7 C 0.309 3.691 8 O -0.408 6.408 9 N -0.293 5.293 10 C -0.034 4.034 11 C -0.069 4.069 12 C -0.242 4.242 13 C 0.112 3.888 14 F -0.127 7.127 15 C -0.266 4.266 16 C 0.112 3.888 17 O -0.111 6.111 18 C -0.466 4.466 19 H 0.126 0.874 20 C -0.138 4.138 21 N -0.506 5.506 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.184 1.184 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.248 0.752 38 H 0.153 0.847 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.712 -10.246 7.697 18.767 hybrid contribution -0.264 0.465 -0.269 0.599 sum -13.976 -9.780 7.428 18.605 Atomic orbital electron populations 1.23413 0.94776 1.06297 1.05006 1.86679 1.06826 1.11179 1.98019 1.23272 0.97325 0.93784 1.06415 1.20513 0.94393 0.92519 0.99301 1.21992 1.01303 1.01780 0.95522 1.21957 1.01154 1.01783 0.95311 1.20381 0.82428 0.90373 0.75894 1.90684 1.46824 1.54204 1.49074 1.43136 1.07866 1.06730 1.71539 1.16842 0.97898 0.84303 1.04396 1.20441 0.98443 0.92155 0.95898 1.20509 0.99935 0.96080 1.07653 1.17457 0.95480 0.77422 0.98472 1.91431 1.93048 1.33467 1.94714 1.21003 1.04765 0.93520 1.07327 1.18525 0.91022 0.89092 0.90180 1.83519 1.40554 1.34808 1.52217 1.20763 1.05510 0.94630 1.25745 0.87381 1.24479 0.93800 1.00425 0.95086 1.69639 1.14461 1.37077 1.29466 0.86206 0.77952 0.83127 0.79736 1.19599 1.20548 1.18386 0.90502 0.88190 0.90536 0.89241 0.89182 0.91472 0.90124 0.91523 0.91723 0.90158 0.91536 0.75227 0.84652 0.85687 0.83270 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 10.76 101.05 1.09 0.18 16 2 S -0.25 -2.45 19.43 -107.50 -2.09 -4.54 16 3 C -0.06 -0.65 4.23 37.16 0.16 -0.50 16 4 C -0.06 -0.74 0.64 -155.66 -0.10 -0.84 16 5 C -0.15 -1.71 8.13 37.16 0.30 -1.40 16 6 C -0.14 -1.45 8.14 37.16 0.30 -1.15 16 7 C 0.52 7.99 6.21 -10.99 -0.07 7.93 16 8 O -0.53 -9.45 13.74 5.55 0.08 -9.37 16 9 N -0.65 -10.67 4.98 -9.72 -0.05 -10.72 16 10 C 0.06 1.13 6.28 -83.45 -0.52 0.61 16 11 C -0.05 -0.87 8.65 -39.43 -0.34 -1.21 16 12 C -0.22 -3.87 10.02 -39.48 -0.40 -4.27 16 13 C 0.13 2.54 7.29 -39.43 -0.29 2.25 16 14 F -0.15 -2.79 17.26 2.25 0.04 -2.75 16 15 C -0.25 -5.23 9.11 -39.36 -0.36 -5.58 16 16 C 0.17 3.60 6.66 -38.94 -0.26 3.34 16 17 O -0.21 -4.91 8.13 0.07 0.00 -4.91 16 18 C -0.39 -10.30 9.90 30.88 0.31 -10.00 16 19 H 0.11 2.96 5.53 -52.48 -0.29 2.67 16 20 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16 21 N -0.87 -23.92 13.96 55.48 0.77 -23.14 16 22 Si 0.90 19.80 28.62 -169.99 -4.86 14.94 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 26 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 27 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.09 0.99 8.10 -51.92 -0.42 0.57 16 30 H 0.09 1.06 8.10 -51.92 -0.42 0.64 16 31 H 0.07 0.78 7.45 -51.93 -0.39 0.40 16 32 H 0.08 0.84 6.91 -51.93 -0.36 0.48 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.75 6.92 -51.93 -0.36 0.39 16 36 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 37 H 0.41 6.32 7.42 -40.82 -0.30 6.01 16 38 H 0.14 2.26 6.48 -52.48 -0.34 1.92 16 39 H 0.13 1.87 8.06 -52.48 -0.42 1.44 16 40 H 0.15 3.34 5.71 -52.49 -0.30 3.04 16 41 H 0.28 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -28.33 356.35 -6.27 -34.59 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.25 Total: 9.52 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.28 Total: -8.98 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.73 Total: -33.86 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.08 Total: -14.29 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.86 Total: 14.94 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.09 Total: -4.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.33 -6.27 -34.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799967330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.399 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds