Wall clock time and date at job start Tue Mar 31 2020 14:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81406 * 102.99889 * 2 1 4 4 C 1.53001 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46974 * 59.99890 * 4 3 2 6 6 C 1.52995 * 109.47089 * 299.99909 * 4 3 2 7 7 C 1.50697 * 109.46776 * 179.97438 * 4 3 2 8 8 O 1.21293 * 120.00567 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99756 * 179.97438 * 7 4 3 10 10 C 1.40095 * 120.00234 * 185.61096 * 9 7 4 11 11 C 1.38703 * 120.07135 * 34.06838 * 10 9 7 12 12 C 1.38190 * 120.01915 * 179.97438 * 11 10 9 13 13 C 1.38550 * 120.17660 * 0.02873 * 12 11 10 14 14 F 1.35098 * 119.92530 * 179.97438 * 13 12 11 15 15 C 1.38342 * 120.15339 * 359.97438 * 13 12 11 16 16 C 1.38746 * 119.97685 * 359.97438 * 15 13 12 17 17 O 1.35768 * 120.08648 * 180.29603 * 16 15 13 18 18 C 1.34804 * 117.00414 * 354.18978 * 17 16 15 19 19 H 1.08010 * 119.99890 * 354.52046 * 18 17 16 20 20 C 1.38631 * 120.00498 * 174.52045 * 18 17 16 21 21 N 1.31570 * 120.00438 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99884 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47102 * 90.00303 * 22 20 18 24 24 H 1.48502 * 109.46967 * 210.00364 * 22 20 18 25 25 H 1.48500 * 109.46897 * 330.00083 * 22 20 18 26 26 H 1.09007 * 109.46874 * 60.00563 * 1 2 3 27 27 H 1.09004 * 109.47131 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47201 * 300.00362 * 1 2 3 29 29 H 1.09001 * 109.46786 * 59.99874 * 3 2 1 30 30 H 1.09002 * 109.47029 * 299.99533 * 3 2 1 31 31 H 1.08997 * 109.47134 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47511 * 300.00010 * 5 4 3 33 33 H 1.09002 * 109.47291 * 60.00013 * 5 4 3 34 34 H 1.08998 * 109.47678 * 299.99842 * 6 4 3 35 35 H 1.09003 * 109.47502 * 60.00320 * 6 4 3 36 36 H 1.09000 * 109.47356 * 179.97438 * 6 4 3 37 37 H 0.97008 * 120.00325 * 5.61240 * 9 7 4 38 38 H 1.08003 * 119.99404 * 359.97401 * 11 10 9 39 39 H 1.08004 * 119.91352 * 180.02562 * 12 11 10 40 40 H 1.07998 * 120.01586 * 180.02562 * 15 13 12 41 41 H 0.96997 * 120.00470 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.3309 1.2807 -1.2483 6 6 4.3298 1.2810 1.2502 7 6 4.0812 3.4084 0.0000 8 8 3.1942 4.2356 -0.0004 9 7 5.3701 3.8024 0.0009 10 6 5.6869 5.1620 0.1190 11 6 4.8944 5.9955 0.8944 12 6 5.2082 7.3363 1.0105 13 6 6.3134 7.8523 0.3534 14 9 6.6152 9.1640 0.4700 15 6 7.1087 7.0276 -0.4220 16 6 6.8002 5.6802 -0.5421 17 8 7.5826 4.8675 -1.2976 18 6 8.5727 5.4522 -2.0011 19 1 8.6602 6.5287 -2.0182 20 6 9.4788 4.6720 -2.7026 21 7 10.4455 5.2427 -3.3889 22 14 9.3281 2.8103 -2.6725 23 1 8.4582 2.3659 -3.7910 24 1 10.6748 2.2023 -2.8210 25 1 8.7317 2.3829 -1.3815 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8031 2.2371 0.8900 30 1 1.8032 2.2372 -0.8900 31 1 5.4138 1.4039 -1.2481 32 1 4.0857 0.2187 -1.2483 33 1 3.9123 1.7502 -2.1385 34 1 3.9105 1.7507 2.1400 35 1 4.0847 0.2189 1.2502 36 1 5.4129 1.4034 1.2505 37 1 6.0785 3.1447 -0.0801 38 1 4.0319 5.5965 1.4075 39 1 4.5902 7.9837 1.6150 40 1 7.9699 7.4321 -0.9329 41 1 11.0797 4.6968 -3.8795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799967330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:28 Heat of formation + Delta-G solvation = -105.378088 kcal Electronic energy + Delta-G solvation = -25816.270259 eV Core-core repulsion = 21930.016892 eV Total energy + Delta-G solvation = -3886.253367 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.89140 -41.97010 -40.62106 -38.33045 -36.77677 -35.69493 -34.49558 -31.29678 -30.29006 -29.88209 -28.35409 -28.14023 -27.36929 -25.07341 -23.68349 -22.87301 -20.59052 -20.17542 -19.66688 -18.45639 -18.04438 -17.33317 -17.02731 -16.84907 -16.61213 -16.25755 -16.11228 -15.89874 -15.66351 -15.32630 -15.16758 -14.99063 -14.95338 -14.34605 -14.26633 -14.19322 -13.87919 -13.60730 -13.45008 -13.23382 -13.11480 -12.94488 -12.86463 -12.63503 -12.42014 -12.17748 -12.16637 -12.10538 -11.68381 -11.27676 -11.01495 -10.94667 -10.69437 -9.67208 -8.89431 -8.59294 -8.53468 -6.28166 0.07351 0.35952 0.65284 1.33700 1.38539 1.47442 1.50940 1.63191 2.04802 2.25444 2.54123 2.81067 2.95930 3.32945 3.38414 3.57417 3.68173 3.85871 4.00714 4.12111 4.22820 4.35323 4.38843 4.41030 4.50366 4.58409 4.68743 4.77660 4.81200 4.84282 4.91817 4.93680 5.09588 5.13382 5.21297 5.22111 5.25767 5.40151 5.56083 5.77744 6.02043 6.35702 6.77989 7.00987 7.40021 8.57425 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.004260 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.532737 B = 6571.454524 C = 8794.885924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.263 6.263 3 C -0.056 4.056 4 C -0.055 4.055 5 C -0.148 4.148 6 C -0.141 4.141 7 C 0.526 3.474 8 O -0.555 6.555 9 N -0.650 5.650 10 C 0.071 3.929 11 C -0.048 4.048 12 C -0.193 4.193 13 C 0.121 3.879 14 F -0.145 7.145 15 C -0.258 4.258 16 C 0.141 3.859 17 O -0.219 6.219 18 C -0.402 4.402 19 H 0.078 0.922 20 C 0.014 3.986 21 N -0.919 5.919 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.272 1.272 25 H -0.242 1.242 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.417 0.583 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.126 0.874 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.417 -11.743 9.625 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.037 6.037 3 C -0.205 4.205 4 C -0.059 4.059 5 C -0.205 4.205 6 C -0.199 4.199 7 C 0.313 3.687 8 O -0.433 6.433 9 N -0.294 5.294 10 C -0.024 4.024 11 C -0.068 4.068 12 C -0.212 4.212 13 C 0.101 3.899 14 F -0.124 7.124 15 C -0.278 4.278 16 C 0.089 3.911 17 O -0.125 6.125 18 C -0.478 4.478 19 H 0.096 0.904 20 C -0.185 4.185 21 N -0.558 5.558 22 Si 0.787 3.213 23 H -0.190 1.190 24 H -0.197 1.197 25 H -0.165 1.165 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.255 0.745 38 H 0.173 0.827 39 H 0.180 0.820 40 H 0.144 0.856 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.211 -12.306 9.465 22.446 hybrid contribution 0.253 1.252 -0.668 1.442 sum -15.957 -11.054 8.797 21.312 Atomic orbital electron populations 1.23507 0.92445 1.07501 1.05608 1.86674 1.09425 1.09588 1.98038 1.23160 0.96543 0.94977 1.05789 1.20505 0.95220 0.89784 1.00399 1.22008 1.01118 1.02533 0.94882 1.21963 1.01325 1.02248 0.94323 1.21035 0.81411 0.91809 0.74409 1.90666 1.47321 1.55327 1.49982 1.43249 1.08772 1.05730 1.71698 1.17038 0.96538 0.85844 1.02960 1.20726 0.98545 0.92120 0.95442 1.20923 0.98415 0.96345 1.05553 1.17511 0.96066 0.77440 0.98898 1.91436 1.93131 1.33156 1.94697 1.21005 1.04763 0.94161 1.07903 1.18863 0.91908 0.89248 0.91085 1.83465 1.40834 1.34596 1.53584 1.20627 1.06572 0.93655 1.26939 0.90418 1.25333 0.93257 1.05404 0.94525 1.69736 1.15888 1.38974 1.31209 0.85279 0.78377 0.77016 0.80595 1.19007 1.19744 1.16485 0.90150 0.86652 0.89742 0.89351 0.90338 0.91581 0.88695 0.92508 0.91352 0.89048 0.91107 0.74513 0.82744 0.82048 0.85577 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 10.76 113.37 1.22 -0.20 16 2 S -0.26 -4.43 19.43 -56.49 -1.10 -5.53 16 3 C -0.06 -1.12 4.23 71.98 0.30 -0.81 16 4 C -0.06 -1.17 0.64 -52.93 -0.03 -1.21 16 5 C -0.15 -3.10 8.13 71.98 0.59 -2.52 16 6 C -0.14 -2.45 8.14 71.98 0.59 -1.86 16 7 C 0.53 15.05 6.21 87.66 0.54 15.59 16 8 O -0.56 -18.64 13.74 -3.07 -0.04 -18.68 16 9 N -0.65 -20.34 4.98 -303.04 -1.51 -21.84 16 10 C 0.07 2.62 6.28 38.23 0.24 2.86 16 11 C -0.05 -1.58 8.65 22.37 0.19 -1.39 16 12 C -0.19 -6.19 10.02 22.33 0.22 -5.96 16 13 C 0.12 4.57 7.29 22.37 0.16 4.74 16 14 F -0.15 -5.38 17.26 44.97 0.78 -4.60 16 15 C -0.26 -11.30 9.11 22.42 0.20 -11.10 16 16 C 0.14 6.19 6.66 22.69 0.15 6.34 16 17 O -0.22 -10.62 8.13 -22.67 -0.18 -10.81 16 18 C -0.40 -22.19 9.90 67.91 0.67 -21.52 16 19 H 0.08 4.62 5.53 -2.91 -0.02 4.60 16 20 C 0.01 0.78 5.49 84.83 0.47 1.25 16 21 N -0.92 -52.70 13.96 21.61 0.30 -52.39 16 22 Si 0.97 40.90 28.62 68.60 1.96 42.87 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.24 -9.38 7.11 99.48 0.71 -8.67 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.76 8.10 -2.39 -0.02 1.74 16 30 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 31 H 0.07 1.40 7.45 -2.39 -0.02 1.38 16 32 H 0.09 1.73 6.91 -2.39 -0.02 1.72 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.43 6.92 -2.39 -0.02 1.41 16 36 H 0.07 1.18 7.70 -2.39 -0.02 1.16 16 37 H 0.42 12.13 7.42 -92.70 -0.69 11.44 16 38 H 0.16 4.62 6.48 -2.91 -0.02 4.60 16 39 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 40 H 0.13 6.09 5.71 -2.91 -0.02 6.08 16 41 H 0.29 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -62.82 356.35 6.11 -56.71 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.38 Total: 30.09 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 5.52 Total: -15.81 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -1.21 Total: -74.24 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.23 Total: -29.49 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.78 Total: -4.60 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.96 Total: 42.87 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -1.10 Total: -5.53 kcal Total: -62.82 6.11 -56.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799967330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.667 kcal (2) G-P(sol) polarization free energy of solvation -62.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds