Wall clock time and date at job start Tue Mar 31 2020 15:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39162 * 110.99968 * 236.04589 * 2 1 3 5 5 C 1.39163 * 119.92891 * 59.72598 * 4 2 1 6 6 C 1.37621 * 120.09987 * 179.72266 * 5 4 2 7 7 C 1.39828 * 119.96478 * 0.55230 * 6 5 4 8 8 C 1.47384 * 120.06924 * 179.74474 * 7 6 5 9 9 O 1.21517 * 119.99618 * 179.97438 * 8 7 6 10 10 O 1.34759 * 120.00193 * 359.97438 * 8 7 6 11 11 C 1.45197 * 117.00172 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46966 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47052 * 180.02562 * 12 11 10 14 14 S 1.80995 * 109.47397 * 179.97438 * 13 12 11 15 15 C 1.76199 * 100.00379 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99457 * 359.97438 * 15 14 13 17 17 C 1.38797 * 119.99933 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00109 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99666 * 179.97438 * 17 15 14 20 20 H 1.48511 * 109.46740 * 90.00110 * 19 17 15 21 21 H 1.48501 * 109.47178 * 209.99526 * 19 17 15 22 22 H 1.48495 * 109.47427 * 329.99977 * 19 17 15 23 23 C 1.39876 * 119.86298 * 359.72488 * 7 6 5 24 24 C 1.37761 * 119.90015 * 359.97438 * 23 7 6 25 25 F 1.35093 * 119.98411 * 179.97438 * 24 23 7 26 26 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 27 27 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 28 28 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 29 29 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 30 30 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 31 31 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 32 32 H 1.08007 * 119.94619 * 359.97438 * 5 4 2 33 33 H 1.08004 * 120.01736 * 180.28027 * 6 5 4 34 34 H 1.08998 * 109.46941 * 299.99320 * 11 10 8 35 35 H 1.08999 * 109.46817 * 59.99855 * 11 10 8 36 36 H 1.09011 * 109.46797 * 299.99472 * 12 11 10 37 37 H 1.08999 * 109.47636 * 59.99580 * 12 11 10 38 38 H 1.09008 * 109.46851 * 299.99689 * 13 12 11 39 39 H 1.08999 * 109.47533 * 59.99161 * 13 12 11 40 40 H 0.97004 * 119.99917 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.04681 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9677 -0.7256 -1.0777 5 6 1.6489 -0.3454 -2.3778 6 6 2.1448 -1.0571 -3.4463 7 6 2.9608 -2.1708 -3.2253 8 6 3.4886 -2.9380 -4.3677 9 8 4.1980 -3.9054 -4.1742 10 8 3.1843 -2.5666 -5.6269 11 6 3.7395 -3.3680 -6.7029 12 6 3.2885 -2.7972 -8.0489 13 6 3.8729 -3.6421 -9.1827 14 16 3.3388 -2.9674 -10.7750 15 6 4.1333 -4.0978 -11.8684 16 1 4.7317 -4.9039 -11.4703 17 6 3.9900 -3.9524 -13.2413 18 7 3.2602 -2.9702 -13.7264 19 14 4.8328 -5.1505 -14.4004 20 1 3.9253 -6.2931 -14.6769 21 1 5.1611 -4.4598 -15.6734 22 1 6.0819 -5.6511 -13.7725 23 6 3.2756 -2.5551 -1.9177 24 6 2.7812 -1.8350 -0.8524 25 9 3.0838 -2.2050 0.4111 26 1 -0.3634 -1.0252 0.0708 27 1 -0.3633 0.4513 -0.9233 28 1 -0.3633 0.5740 0.8525 29 1 1.5899 1.9163 0.8525 30 1 3.0829 1.3431 0.0709 31 1 1.7045 1.8723 -0.9233 32 1 1.0146 0.5120 -2.5486 33 1 1.9002 -0.7581 -4.4549 34 1 4.8278 -3.3479 -6.6466 35 1 3.3896 -4.3959 -6.6080 36 1 2.2000 -2.8169 -8.1055 37 1 3.6387 -1.7694 -8.1435 38 1 4.9614 -3.6228 -9.1262 39 1 3.5224 -4.6698 -9.0880 40 1 3.1597 -2.8688 -14.6859 41 1 3.9060 -3.4146 -1.7436 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805429751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:18 Heat of formation + Delta-G solvation = -104.962231 kcal Electronic energy + Delta-G solvation = -23765.158868 eV Core-core repulsion = 19878.923534 eV Total energy + Delta-G solvation = -3886.235334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.16093 -40.87347 -39.86674 -37.28469 -36.54115 -33.57202 -32.46815 -31.23018 -30.85778 -28.17247 -27.02501 -25.80418 -25.29051 -23.22842 -22.81525 -21.41411 -21.04209 -18.65868 -17.66576 -17.44744 -17.10289 -16.71666 -16.54700 -16.17827 -16.17070 -15.19742 -14.94045 -14.84061 -14.71888 -14.65011 -14.50776 -13.77607 -13.39137 -13.18793 -13.12742 -12.91442 -12.81502 -12.49540 -12.35057 -12.24359 -12.14534 -11.87851 -11.39264 -11.18760 -11.03367 -10.96150 -10.78704 -10.65442 -10.35104 -9.66886 -9.57830 -9.21890 -9.14919 -9.09916 -8.38982 -6.59337 -6.27179 -3.98416 0.02534 0.66299 2.10785 2.34872 3.12844 3.13366 3.19687 3.20455 3.27296 3.49966 3.80261 4.17658 4.19791 4.34773 4.48002 4.58731 4.66218 4.74397 4.92409 4.94490 5.05936 5.06826 5.09802 5.12689 5.25983 5.32552 5.33744 5.37697 5.44134 5.47942 5.63189 5.68789 5.73070 5.86562 6.05029 6.09614 6.19756 6.32371 6.40516 6.62221 6.66074 7.53635 7.56913 8.32548 9.19367 10.80950 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.031869 B = 0.001750 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.372613 B =15994.965909 C =16681.707341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.513 5.513 3 C 0.027 3.973 4 C 0.085 3.915 5 C -0.135 4.135 6 C -0.059 4.059 7 C -0.096 4.096 8 C 0.508 3.492 9 O -0.501 6.501 10 O -0.349 6.349 11 C 0.073 3.927 12 C -0.098 4.098 13 C -0.115 4.115 14 S -0.124 6.124 15 C -0.519 4.519 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.869 5.869 19 Si 0.920 3.080 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.087 4.087 24 C 0.113 3.887 25 F -0.122 7.122 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.268 0.732 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 7.907 28.018 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.234 5.234 3 C -0.120 4.120 4 C -0.010 4.010 5 C -0.155 4.155 6 C -0.078 4.078 7 C -0.097 4.097 8 C 0.352 3.648 9 O -0.391 6.391 10 O -0.265 6.265 11 C -0.001 4.001 12 C -0.136 4.136 13 C -0.264 4.264 14 S 0.105 5.895 15 C -0.667 4.667 16 H 0.092 0.908 17 C -0.138 4.138 18 N -0.505 5.505 19 Si 0.746 3.254 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.107 4.107 24 C 0.093 3.907 25 F -0.100 7.100 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.288 8.375 28.122 29.815 hybrid contribution 1.158 -1.601 -1.039 2.232 sum -4.130 6.774 27.082 28.221 Atomic orbital electron populations 1.22521 0.84852 1.03206 1.01466 1.59388 1.09222 1.14798 1.39945 1.22512 1.01334 0.86645 1.01460 1.19038 0.97226 0.94554 0.90223 1.21537 1.01253 1.01104 0.91645 1.21478 0.93379 0.92365 1.00554 1.18954 1.02186 0.97793 0.90796 1.20838 0.78054 0.82467 0.83428 1.90869 1.35142 1.26806 1.86236 1.86512 1.69035 1.56170 1.14786 1.23347 0.98725 0.94319 0.83751 1.21294 1.02299 1.00539 0.89476 1.23182 1.02559 1.01538 0.99079 1.84639 1.68023 1.42755 0.94126 1.22697 1.35839 1.15530 0.92619 0.90815 1.25017 0.95262 0.96048 0.97426 1.70014 1.37273 1.29672 1.13518 0.86145 0.79574 0.80214 0.79484 1.20231 1.20720 1.19651 1.21184 0.99310 1.00223 0.89943 1.17223 0.99023 0.94936 0.79564 1.91535 1.91320 1.90611 1.36551 0.90825 0.94464 0.90317 0.90312 0.90844 0.94485 0.84256 0.83191 0.90898 0.90889 0.90283 0.90276 0.91680 0.91682 0.92235 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.33 60.07 0.56 0.70 16 2 N -0.51 -3.72 4.80 -186.78 -0.90 -4.62 16 3 C 0.03 0.14 9.38 60.06 0.56 0.71 16 4 C 0.09 0.70 4.73 -83.76 -0.40 0.30 16 5 C -0.14 -0.95 8.53 -39.46 -0.34 -1.28 16 6 C -0.06 -0.48 9.60 -39.21 -0.38 -0.86 16 7 C -0.10 -0.98 5.88 -104.97 -0.62 -1.60 16 8 C 0.51 6.51 7.89 34.45 0.27 6.79 16 9 O -0.50 -7.66 16.13 -19.28 -0.31 -7.97 16 10 O -0.35 -4.53 9.46 -40.65 -0.38 -4.92 16 11 C 0.07 1.01 5.48 37.16 0.20 1.22 16 12 C -0.10 -1.52 5.60 -26.73 -0.15 -1.67 16 13 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 14 S -0.12 -3.15 21.44 -107.50 -2.30 -5.46 16 15 C -0.52 -14.66 9.50 30.94 0.29 -14.37 16 16 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 17 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 18 N -0.87 -25.62 13.22 55.49 0.73 -24.89 16 19 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 C -0.09 -0.85 9.56 -39.14 -0.37 -1.23 16 24 C 0.11 1.08 7.30 -39.32 -0.29 0.79 16 25 F -0.12 -1.29 17.07 2.25 0.04 -1.25 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.16 7.08 -51.93 -0.37 -0.20 16 28 H 0.08 0.31 8.12 -51.93 -0.42 -0.11 16 29 H 0.08 0.31 8.12 -51.93 -0.42 -0.11 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.17 7.33 -51.93 -0.38 -0.21 16 32 H 0.14 0.69 6.99 -52.48 -0.37 0.32 16 33 H 0.15 1.08 7.60 -52.48 -0.40 0.69 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.22 8.14 -51.92 -0.42 0.79 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.25 8.14 -51.91 -0.42 0.82 16 39 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.15 1.48 7.64 -52.49 -0.40 1.08 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -32.29 371.04 -8.77 -41.06 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.68 Total: -3.23 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.53 Total: -10.61 kcal Atomic # 7 Polarization: -29.35 SS G_CDS: -0.16 Total: -29.51 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.70 Total: -12.89 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.30 Total: -5.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.29 -8.77 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805429751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.901 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds