Wall clock time and date at job start Tue Mar 31 2020 15:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39162 * 110.99968 * 236.04589 * 2 1 3 5 5 C 1.39163 * 119.92891 * 59.72598 * 4 2 1 6 6 C 1.37621 * 120.09987 * 179.72266 * 5 4 2 7 7 C 1.39828 * 119.96478 * 0.55230 * 6 5 4 8 8 C 1.47384 * 120.06924 * 179.74474 * 7 6 5 9 9 O 1.21517 * 119.99618 * 179.97438 * 8 7 6 10 10 O 1.34759 * 120.00193 * 359.97438 * 8 7 6 11 11 C 1.45197 * 117.00172 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46966 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47052 * 180.02562 * 12 11 10 14 14 S 1.80995 * 109.47397 * 179.97438 * 13 12 11 15 15 C 1.76199 * 100.00379 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99457 * 359.97438 * 15 14 13 17 17 C 1.38797 * 119.99933 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00109 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99666 * 179.97438 * 17 15 14 20 20 H 1.48511 * 109.46740 * 90.00110 * 19 17 15 21 21 H 1.48501 * 109.47178 * 209.99526 * 19 17 15 22 22 H 1.48495 * 109.47427 * 329.99977 * 19 17 15 23 23 C 1.39876 * 119.86298 * 359.72488 * 7 6 5 24 24 C 1.37761 * 119.90015 * 359.97438 * 23 7 6 25 25 F 1.35093 * 119.98411 * 179.97438 * 24 23 7 26 26 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 27 27 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 28 28 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 29 29 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 30 30 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 31 31 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 32 32 H 1.08007 * 119.94619 * 359.97438 * 5 4 2 33 33 H 1.08004 * 120.01736 * 180.28027 * 6 5 4 34 34 H 1.08998 * 109.46941 * 299.99320 * 11 10 8 35 35 H 1.08999 * 109.46817 * 59.99855 * 11 10 8 36 36 H 1.09011 * 109.46797 * 299.99472 * 12 11 10 37 37 H 1.08999 * 109.47636 * 59.99580 * 12 11 10 38 38 H 1.09008 * 109.46851 * 299.99689 * 13 12 11 39 39 H 1.08999 * 109.47533 * 59.99161 * 13 12 11 40 40 H 0.97004 * 119.99917 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.04681 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9677 -0.7256 -1.0777 5 6 1.6489 -0.3454 -2.3778 6 6 2.1448 -1.0571 -3.4463 7 6 2.9608 -2.1708 -3.2253 8 6 3.4886 -2.9380 -4.3677 9 8 4.1980 -3.9054 -4.1742 10 8 3.1843 -2.5666 -5.6269 11 6 3.7395 -3.3680 -6.7029 12 6 3.2885 -2.7972 -8.0489 13 6 3.8729 -3.6421 -9.1827 14 16 3.3388 -2.9674 -10.7750 15 6 4.1333 -4.0978 -11.8684 16 1 4.7317 -4.9039 -11.4703 17 6 3.9900 -3.9524 -13.2413 18 7 3.2602 -2.9702 -13.7264 19 14 4.8328 -5.1505 -14.4004 20 1 3.9253 -6.2931 -14.6769 21 1 5.1611 -4.4598 -15.6734 22 1 6.0819 -5.6511 -13.7725 23 6 3.2756 -2.5551 -1.9177 24 6 2.7812 -1.8350 -0.8524 25 9 3.0838 -2.2050 0.4111 26 1 -0.3634 -1.0252 0.0708 27 1 -0.3633 0.4513 -0.9233 28 1 -0.3633 0.5740 0.8525 29 1 1.5899 1.9163 0.8525 30 1 3.0829 1.3431 0.0709 31 1 1.7045 1.8723 -0.9233 32 1 1.0146 0.5120 -2.5486 33 1 1.9002 -0.7581 -4.4549 34 1 4.8278 -3.3479 -6.6466 35 1 3.3896 -4.3959 -6.6080 36 1 2.2000 -2.8169 -8.1055 37 1 3.6387 -1.7694 -8.1435 38 1 4.9614 -3.6228 -9.1262 39 1 3.5224 -4.6698 -9.0880 40 1 3.1597 -2.8688 -14.6859 41 1 3.9060 -3.4146 -1.7436 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805429751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:17 Heat of formation + Delta-G solvation = -122.559848 kcal Electronic energy + Delta-G solvation = -23765.921958 eV Core-core repulsion = 19878.923534 eV Total energy + Delta-G solvation = -3886.998424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.92474 -41.79375 -40.59650 -38.12452 -37.41187 -34.91889 -34.58219 -31.90557 -31.57242 -28.55661 -28.30782 -27.58405 -26.31976 -23.90201 -23.59736 -22.71548 -21.85110 -19.71355 -19.34657 -18.51351 -17.79928 -17.72791 -17.39203 -17.01040 -16.89697 -16.86943 -16.16232 -15.99651 -15.73409 -15.45013 -15.27634 -15.05101 -14.47520 -14.24703 -14.06435 -13.86096 -13.77582 -13.46557 -13.17707 -13.02764 -13.01459 -12.94391 -12.66173 -12.63786 -12.53806 -12.40997 -12.38674 -11.85980 -11.54067 -11.47458 -11.14911 -10.35936 -10.24316 -9.89027 -9.64922 -8.67414 -8.38247 -6.14319 -0.71716 -0.00727 1.22020 1.22702 1.37519 1.39631 1.50266 1.79854 2.26986 2.38498 2.61735 2.96427 3.11582 3.27360 3.44030 3.58329 3.85492 3.89147 3.92046 3.97363 4.12708 4.14727 4.33019 4.36019 4.38118 4.44918 4.56871 4.60090 4.68732 4.74411 4.83950 4.93828 4.98322 5.00757 5.02567 5.05222 5.09898 5.32756 5.40090 5.40215 5.78343 6.10962 6.17750 6.52068 7.04564 8.70957 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.031869 B = 0.001750 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.372613 B =15994.965909 C =16681.707341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.531 5.531 3 C 0.025 3.975 4 C 0.095 3.905 5 C -0.126 4.126 6 C -0.048 4.048 7 C -0.113 4.113 8 C 0.511 3.489 9 O -0.532 6.532 10 O -0.345 6.345 11 C 0.080 3.920 12 C -0.085 4.085 13 C -0.093 4.093 14 S -0.182 6.182 15 C -0.541 4.541 16 H 0.074 0.926 17 C 0.017 3.983 18 N -0.906 5.906 19 Si 0.993 3.007 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.264 1.264 23 C -0.088 4.088 24 C 0.096 3.904 25 F -0.132 7.132 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.272 0.728 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.386 8.545 28.663 30.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.253 5.253 3 C -0.120 4.120 4 C -0.001 4.001 5 C -0.145 4.145 6 C -0.067 4.067 7 C -0.114 4.114 8 C 0.357 3.643 9 O -0.423 6.423 10 O -0.261 6.261 11 C 0.005 3.995 12 C -0.123 4.123 13 C -0.242 4.242 14 S 0.046 5.954 15 C -0.689 4.689 16 H 0.092 0.908 17 C -0.189 4.189 18 N -0.542 5.542 19 Si 0.815 3.185 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.188 1.188 23 C -0.108 4.108 24 C 0.075 3.925 25 F -0.111 7.111 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.186 0.814 33 H 0.181 0.819 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.751 9.030 28.783 30.709 hybrid contribution 1.249 -1.727 -1.088 2.393 sum -4.502 7.303 27.695 28.993 Atomic orbital electron populations 1.22588 0.83559 1.03164 1.02835 1.59417 1.10444 1.15810 1.39646 1.22575 1.00887 0.85760 1.02807 1.19206 0.95969 0.93741 0.91178 1.21773 1.00807 1.01398 0.90551 1.21644 0.92165 0.91283 1.01604 1.18836 1.03908 0.98905 0.89738 1.21250 0.77329 0.82131 0.83566 1.90855 1.36728 1.28292 1.86464 1.86491 1.68924 1.55870 1.14836 1.23112 0.98859 0.94318 0.83193 1.21106 1.02231 0.99962 0.89043 1.23078 1.02760 1.01918 0.96465 1.84588 1.68801 1.43887 0.98090 1.23063 1.36177 1.15971 0.93713 0.90822 1.26038 0.95787 0.97861 0.99178 1.70138 1.38542 1.31424 1.14093 0.85029 0.78599 0.77783 0.77082 1.19324 1.19899 1.18840 1.21124 0.99360 1.00206 0.90101 1.17376 1.00145 0.95901 0.79049 1.91503 1.91584 1.90858 1.37150 0.91641 0.93109 0.88924 0.88894 0.91705 0.93190 0.81422 0.81911 0.90615 0.90602 0.89956 0.89950 0.91362 0.91342 0.91906 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.33 127.69 1.19 1.39 16 2 N -0.53 -6.66 4.80 -744.84 -3.57 -10.24 16 3 C 0.03 0.21 9.38 127.69 1.20 1.41 16 4 C 0.09 1.39 4.73 38.48 0.18 1.57 16 5 C -0.13 -1.42 8.53 22.35 0.19 -1.23 16 6 C -0.05 -0.68 9.60 22.51 0.22 -0.47 16 7 C -0.11 -2.21 5.88 -20.09 -0.12 -2.33 16 8 C 0.51 12.81 7.89 70.23 0.55 13.36 16 9 O -0.53 -16.30 16.13 19.78 0.32 -15.98 16 10 O -0.35 -8.52 9.46 -56.70 -0.54 -9.05 16 11 C 0.08 2.12 5.48 71.98 0.39 2.51 16 12 C -0.08 -2.54 5.60 30.59 0.17 -2.37 16 13 C -0.09 -3.57 5.67 71.98 0.41 -3.16 16 14 S -0.18 -9.40 21.44 -56.49 -1.21 -10.61 16 15 C -0.54 -30.78 9.50 67.95 0.65 -30.14 16 16 H 0.07 4.04 7.80 -2.91 -0.02 4.01 16 17 C 0.02 0.93 5.49 84.86 0.47 1.40 16 18 N -0.91 -53.83 13.22 21.65 0.29 -53.54 16 19 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 23 C -0.09 -1.73 9.56 22.55 0.22 -1.52 16 24 C 0.10 1.79 7.30 22.44 0.16 1.95 16 25 F -0.13 -2.83 17.07 44.97 0.77 -2.07 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.28 7.08 -2.39 -0.02 0.26 16 28 H 0.09 0.49 8.12 -2.38 -0.02 0.47 16 29 H 0.09 0.50 8.12 -2.38 -0.02 0.48 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.29 7.33 -2.39 -0.02 0.27 16 32 H 0.17 0.96 6.99 -2.91 -0.02 0.94 16 33 H 0.16 1.90 7.60 -2.91 -0.02 1.88 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 40 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.15 2.98 7.64 -2.91 -0.02 2.96 16 Total: -1.00 -69.85 371.04 4.99 -64.86 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.03 Total: 8.75 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 5.88 Total: -17.61 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -3.29 Total: -63.78 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.22 Total: -25.03 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.77 Total: -2.07 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.21 Total: -10.61 kcal Total: -69.85 4.99 -64.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805429751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.698 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds