Wall clock time and date at job start Tue Mar 31 2020 15:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39024 * 120.00075 * 179.97438 * 2 1 3 5 5 C 1.39320 * 119.90066 * 0.02562 * 4 2 1 6 6 C 1.36504 * 120.27584 * 179.97438 * 5 4 2 7 7 C 1.39923 * 120.06993 * 359.97438 * 6 5 4 8 8 C 1.47223 * 120.09512 * 180.02562 * 7 6 5 9 9 O 1.21544 * 119.99901 * 179.97438 * 8 7 6 10 10 O 1.34774 * 120.00316 * 359.97438 * 8 7 6 11 11 C 1.45199 * 117.00406 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47438 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47162 * 179.97438 * 12 11 10 14 14 S 1.81001 * 109.47163 * 179.97438 * 13 12 11 15 15 C 1.76203 * 100.00342 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99634 * 359.97438 * 15 14 13 17 17 C 1.38795 * 120.00043 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00348 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99738 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47109 * 59.99834 * 19 17 15 21 21 H 1.48503 * 109.46769 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46880 * 299.99356 * 19 17 15 23 23 C 1.40133 * 119.80897 * 0.02562 * 7 6 5 24 24 F 1.35090 * 120.13845 * 180.02562 * 23 7 6 25 25 C 1.37987 * 119.72077 * 359.72804 * 23 7 6 26 26 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 27 27 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 28 28 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 29 29 H 1.09000 * 109.47202 * 89.99334 * 3 2 1 30 30 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 31 31 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 32 32 H 1.07997 * 119.86453 * 0.02562 * 5 4 2 33 33 H 1.07995 * 119.96667 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46915 * 300.00489 * 11 10 8 35 35 H 1.08998 * 109.46921 * 60.00414 * 11 10 8 36 36 H 1.09000 * 109.46976 * 299.99850 * 12 11 10 37 37 H 1.08998 * 109.47218 * 59.99994 * 12 11 10 38 38 H 1.08992 * 109.47915 * 299.99804 * 13 12 11 39 39 H 1.09011 * 109.47130 * 60.00202 * 13 12 11 40 40 H 0.96999 * 120.00042 * 180.02562 * 18 17 15 41 41 H 1.08004 * 120.03425 * 180.26757 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2040 0.0005 5 6 1.4614 -2.4093 0.0005 6 6 2.1362 -3.5959 0.0005 7 6 3.5354 -3.6068 0.0000 8 6 4.2637 -4.8862 -0.0006 9 8 5.4792 -4.8936 -0.0015 10 8 3.5828 -6.0493 -0.0001 11 6 4.3662 -7.2718 -0.0001 12 6 3.4269 -8.4795 -0.0001 13 6 4.2523 -9.7677 -0.0008 14 16 3.1411 -11.1964 0.0000 15 6 4.3229 -12.5033 -0.0002 16 1 5.3788 -12.2765 -0.0011 17 6 3.8968 -13.8243 -0.0003 18 7 2.6098 -14.1007 0.0003 19 14 5.1497 -15.2098 -0.0012 20 1 6.0015 -15.1076 1.2109 21 1 4.4432 -16.5160 -0.0005 22 1 6.0002 -15.1072 -1.2142 23 6 4.2414 -2.3963 0.0000 24 9 5.5923 -2.3990 -0.0010 25 6 3.5510 -1.2016 -0.0052 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 -0.8900 -0.5138 28 1 -0.3633 0.8900 -0.5139 29 1 2.3791 1.5834 1.0277 30 1 3.1499 1.1384 -0.5137 31 1 1.6085 2.0284 -0.5138 32 1 0.3815 -2.4049 -0.0003 33 1 1.5896 -4.5273 0.0010 34 1 4.9946 -7.3007 -0.8903 35 1 4.9951 -7.3004 0.8897 36 1 2.7982 -8.4509 0.8899 37 1 2.7982 -8.4508 -0.8901 38 1 4.8806 -9.7962 -0.8909 39 1 4.8813 -9.7966 0.8891 40 1 2.3121 -15.0239 0.0006 41 1 4.0900 -0.2657 -0.0095 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805516451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:20 Heat of formation + Delta-G solvation = -104.456166 kcal Electronic energy + Delta-G solvation = -23827.960731 eV Core-core repulsion = 19941.747342 eV Total energy + Delta-G solvation = -3886.213390 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.12208 -40.52019 -39.70095 -36.81701 -36.28186 -33.43504 -32.42125 -31.57829 -30.80076 -28.68567 -26.91733 -25.88207 -25.32177 -22.85599 -22.68295 -21.27905 -20.83514 -18.48814 -17.75457 -17.37682 -17.03834 -16.56716 -16.45908 -16.16183 -15.92440 -15.50175 -15.09138 -14.80176 -14.71961 -14.48526 -14.33877 -13.70566 -13.23493 -13.21147 -12.95936 -12.93653 -12.81895 -12.58484 -12.47622 -12.41901 -12.06979 -11.54323 -11.27726 -11.08913 -10.92084 -10.89371 -10.66285 -10.42656 -10.38352 -10.19632 -9.61060 -9.28285 -9.04663 -8.33406 -7.98908 -6.53769 -6.22419 -3.93269 0.47896 0.89029 2.39188 2.45613 2.63767 3.24216 3.25041 3.29352 3.39655 3.57873 3.87736 4.22478 4.22555 4.33629 4.56351 4.62980 4.68486 4.75220 4.87688 4.94550 5.03771 5.11357 5.13523 5.13613 5.19838 5.27147 5.38790 5.46224 5.55909 5.65837 5.69736 5.83457 5.87515 5.99691 6.21090 6.23285 6.50002 6.51579 6.52456 6.72538 6.76091 7.61212 7.83063 8.37071 9.23890 10.85672 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.030280 B = 0.001810 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.472705 B =15466.024362 C =16354.143489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.084 3.916 4 C 0.275 3.725 5 C -0.222 4.222 6 C 0.018 3.982 7 C -0.225 4.225 8 C 0.510 3.490 9 O -0.507 6.507 10 O -0.352 6.352 11 C 0.074 3.926 12 C -0.097 4.097 13 C -0.115 4.115 14 S -0.124 6.124 15 C -0.519 4.519 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.870 5.870 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.216 3.784 24 F -0.114 7.114 25 C -0.257 4.257 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.268 0.732 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 32.970 -0.173 33.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.331 5.331 3 C -0.058 4.058 4 C 0.168 3.832 5 C -0.244 4.244 6 C -0.001 4.001 7 C -0.229 4.229 8 C 0.355 3.645 9 O -0.396 6.396 10 O -0.269 6.269 11 C -0.001 4.001 12 C -0.135 4.135 13 C -0.263 4.263 14 S 0.104 5.896 15 C -0.667 4.667 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.505 5.505 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C 0.195 3.805 24 F -0.092 7.092 25 C -0.281 4.281 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.235 32.924 -0.175 33.510 hybrid contribution 2.506 -0.838 0.015 2.643 sum -3.729 32.086 -0.161 32.302 Atomic orbital electron populations 1.21821 0.78481 1.03390 1.01993 1.46397 1.05785 1.03344 1.77588 1.21812 0.97582 0.84506 1.01930 1.17724 0.90258 0.86224 0.88948 1.20489 1.00658 0.90387 1.12912 1.20891 0.91576 0.98954 0.88685 1.18937 0.94274 0.89503 1.20219 1.20695 0.85949 0.84440 0.73392 1.90893 1.14510 1.88169 1.46034 1.86492 1.41651 1.14754 1.84036 1.23257 0.94049 0.80088 1.02658 1.21276 0.97820 0.90186 1.04257 1.23183 1.02052 0.97710 1.03376 1.84619 1.12263 0.95799 1.96887 1.22666 0.93598 0.91709 1.58715 0.90884 1.25010 0.95955 0.98226 0.94531 1.70007 1.13473 1.19927 1.47123 0.86209 0.80448 0.79907 0.78891 1.19914 1.20806 1.19910 1.17304 0.77021 0.92326 0.93814 1.91599 1.27992 1.97216 1.92348 1.20436 0.92809 0.97473 1.17346 0.92556 0.90561 0.90967 0.92610 0.90814 0.90909 0.84440 0.83218 0.91150 0.91144 0.90350 0.90357 0.91716 0.91718 0.92220 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.26 10.22 59.85 0.61 0.87 16 2 N -0.62 -3.28 3.39 -187.57 -0.64 -3.91 16 3 C 0.08 0.27 10.22 59.85 0.61 0.89 16 4 C 0.27 2.08 6.55 -83.88 -0.55 1.53 16 5 C -0.22 -1.66 9.13 -39.81 -0.36 -2.02 16 6 C 0.02 0.17 9.55 -39.58 -0.38 -0.21 16 7 C -0.23 -2.77 5.88 -104.91 -0.62 -3.39 16 8 C 0.51 7.78 7.88 34.38 0.27 8.05 16 9 O -0.51 -9.17 15.12 -19.30 -0.29 -9.47 16 10 O -0.35 -5.24 9.46 -40.69 -0.38 -5.62 16 11 C 0.07 1.15 5.48 37.16 0.20 1.35 16 12 C -0.10 -1.62 5.60 -26.73 -0.15 -1.77 16 13 C -0.11 -2.33 5.67 37.15 0.21 -2.12 16 14 S -0.12 -3.24 21.44 -107.50 -2.30 -5.55 16 15 C -0.52 -14.96 9.50 30.94 0.29 -14.67 16 16 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 17 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 18 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 19 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.22 2.54 7.28 -38.96 -0.28 2.26 16 24 F -0.11 -1.58 15.54 2.25 0.04 -1.54 16 25 C -0.26 -2.25 9.17 -39.36 -0.36 -2.61 16 26 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.08 0.20 6.17 -51.93 -0.32 -0.12 16 28 H 0.07 0.11 7.89 -51.93 -0.41 -0.30 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.24 6.16 -51.93 -0.32 -0.08 16 31 H 0.07 0.12 7.89 -51.93 -0.41 -0.29 16 32 H 0.14 0.69 6.10 -52.49 -0.32 0.37 16 33 H 0.15 1.25 7.60 -52.49 -0.40 0.85 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 39 H 0.06 1.30 8.14 -51.91 -0.42 0.88 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 41 H 0.14 0.96 6.11 -52.48 -0.32 0.64 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -34.56 365.83 -8.38 -42.94 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.42 Total: -3.87 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.60 Total: -9.88 kcal Atomic # 7 Polarization: -29.28 SS G_CDS: 0.10 Total: -29.18 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.68 Total: -15.09 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.30 Total: -5.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.56 -8.38 -42.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805516451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.513 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds